Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.9e-106 388.7 209 100.0
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 8.0e-72 274.2 212 71.7
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.2e-67 260.4 216 67.6
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 8.6e-66 254.2 216 69.9
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 9.5e-65 250.8 211 66.4
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 4.7e-64 248.4 214 67.8
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.8e-63 246.5 212 68.4
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.0e-63 245.4 212 66.5
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 4.4e-62 241.9 212 67.0
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 7.5e-62 241.1 209 65.1
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 3.7e-61 238.8 213 67.6
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.9e-60 236.5 212 63.7
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.9e-60 236.5 214 65.4
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.1e-59 233.0 217 62.7
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.7e-59 232.6 216 62.5
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.7e-59 232.6 221 61.5
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.3e-58 229.6 216 64.4
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.3e-58 229.6 213 65.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 6.6e-58 228.0 210 63.8
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 8.6e-58 227.6 216 61.6
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 8.6e-58 227.6 210 62.4
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.1e-57 227.3 209 62.7
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.5e-57 226.9 226 60.2
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.9e-57 226.5 210 62.9
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 7.3e-57 224.6 218 62.8
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 7.3e-57 224.6 216 62.5
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 9.5e-57 224.2 221 60.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 9.5e-57 224.2 221 60.2
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.7e-56 221.9 211 60.7
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 4.7e-56 221.9 211 60.7
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 6.2e-56 221.5 223 59.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.1e-55 220.7 229 57.2
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.4e-55 220.3 212 62.7
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.8e-55 219.9 229 60.7
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.8e-55 219.9 229 60.7
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 4.0e-55 218.8 213 62.0
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.5e-54 216.9 212 59.0
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.5e-54 216.9 217 59.4
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.6e-54 216.1 229 59.4
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 5.8e-54 214.9 215 59.5
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 7.5e-54 214.5 229 59.4
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 7.5e-54 214.5 192 63.0
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 9.9e-54 214.2 208 63.5
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 9.9e-54 214.2 224 58.9
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 9.9e-54 214.2 205 63.4
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 2.9e-53 212.6 211 61.1
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.9e-53 212.6 229 59.8
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.9e-53 212.6 211 58.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.7e-53 212.2 234 57.7
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 8.3e-53 211.1 209 61.7
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 8.3e-53 211.1 228 57.0
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.4e-52 210.3 212 59.4
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.9e-52 209.9 232 56.9
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.4e-52 209.5 213 61.0
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.1e-51 206.5 219 58.9
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 2.7e-51 206.1 235 55.3
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 3.5e-51 205.7 209 61.2
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 4.6e-51 205.3 200 60.0
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.3e-50 203.8 212 59.0
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 1.7e-50 203.4 211 55.5
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.7e-50 203.4 213 57.7
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 3.9e-50 202.2 209 59.8
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 3.9e-50 202.2 209 57.9
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.9e-50 202.2 218 58.3
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 6.6e-50 201.4 209 58.4
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 8.6e-50 201.1 210 58.6
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.5e-49 200.3 221 58.4
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.5e-49 199.5 228 57.5
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.3e-49 199.1 221 57.9
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 5.6e-49 198.4 235 51.5
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 7.3e-49 198.0 235 53.6
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 7.3e-49 198.0 235 53.6
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 9.5e-49 197.6 127 77.2
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.6e-48 196.8 211 55.5
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.6e-48 196.8 260 51.5
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.8e-48 196.1 126 76.2
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 3.6e-48 195.7 216 53.7
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.6e-48 195.7 238 50.4
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 3.6e-48 195.7 127 75.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 4.7e-48 195.3 224 55.4
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.1e-47 194.1 127 75.6
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 2.4e-47 193.0 126 76.2
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.0e-47 192.2 232 50.0
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.2e-47 191.8 126 75.4
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 8.9e-47 191.0 235 49.8
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 8.9e-47 191.0 209 54.1
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.5e-46 190.3 199 58.3
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 7.6e-46 188.0 197 55.8
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 9.9e-46 187.6 122 76.2
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.3e-45 187.2 208 56.2
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.2e-45 186.4 213 57.3
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 3.8e-45 185.7 252 49.6
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 4.9e-45 185.3 211 55.5
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 4.9e-45 185.3 209 56.5
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 4.9e-45 185.3 189 61.4
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 8.4e-45 184.5 212 55.2
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.9e-44 183.3 206 55.8
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 5.4e-44 181.8 210 54.8
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 9.2e-44 181.0 211 54.5
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-43 180.6 127 70.1
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-43 179.9 127 70.1
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 6.0e-43 178.3 241 49.0
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.3e-42 177.2 125 69.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.7e-42 176.8 125 68.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.7e-42 176.8 125 68.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.3e-42 176.4 214 53.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 5.1e-42 175.3 125 68.8
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 5.1e-42 175.3 227 49.3
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 8.7e-42 174.5 212 53.8
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.1e-41 174.1 127 66.9
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.9e-41 173.3 215 49.8
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 4.3e-41 172.2 206 49.5
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.6e-40 170.2 108 81.5
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.1e-40 169.9 210 51.4
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.4e-39 167.2 167 59.9
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.8e-39 166.8 220 51.4
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 4.0e-39 165.6 216 50.9
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 6.9e-39 164.9 104 79.8
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.6e-38 162.9 203 49.3
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.2e-37 159.8 192 55.2
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.8e-37 159.1 125 64.8
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.8e-37 159.1 155 63.9
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 2.4e-36 156.4 95 80.0
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 6.0e-35 151.8 217 46.5
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.3e-34 150.6 128 64.1
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.9e-33 146.7 126 60.3
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 9.6e-33 144.4 194 49.0
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 9.6e-33 144.4 194 49.0
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 2.8e-32 142.9 118 61.9
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-31 140.6 109 64.2
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.4e-31 140.6 109 67.9
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 2.4e-31 139.8 169 56.8
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 2.6e-30 136.3 209 44.0
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 9.9e-30 134.4 139 60.4
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.3e-29 134.0 101 68.3
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.7e-29 133.7 195 48.2
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 3.8e-29 132.5 138 54.3
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.8e-29 132.5 204 43.6
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 8.4e-29 131.3 217 41.0
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 3.5e-27 125.9 103 60.2
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-26 124.4 127 55.9
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 8.7e-26 121.3 135 54.8
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 1.5e-25 120.6 104 60.6
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 4.3e-25 119.0 130 50.8
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 4.3e-25 119.0 221 42.5
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 7.4e-25 118.2 165 46.1
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.8e-23 113.6 146 51.4
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 7.1e-20 101.7 84 63.1
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.0e-19 98.6 82 61.0
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 5.7e-17 92.0 124 46.0
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 7.6e-14 81.6 48 77.1
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.7e-13 80.5 111 41.4
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 2.2e-13 80.1 173 40.5
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.9e-13 79.7 104 53.8
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 2.1e-11 73.6 65 56.9
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.0e-10 71.2 94 46.8
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.3e-08 64.3 41 68.3
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 3.7e-08 62.8 107 48.6
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.7e-08 62.8 108 47.2
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 1.1e-07 61.2 37 73.0
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 5.9e-06 55.5 148 37.2


User provided reference genes

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