Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold28G11732 Striga asiatica HOM05D056663 ORTHO05D011213 9.9e-219 763.1 365 100.0
SGA_v2.0_scaffold191G40503 Striga asiatica HOM05D000003 ORTHO05D000004 1.2e-27 128.3 345 29.9
SGA_v2.0_scaffold61G21264 Striga asiatica HOM05D017438 ORTHO05D000004 8.1e-27 125.6 299 30.4
SGA_v2.0_scaffold71G23744 Striga asiatica HOM05D004014 ORTHO05D005890 1.1e-26 125.2 353 30.0
SGA_v2.0_scaffold299G47717 Striga asiatica HOM05D000003 ORTHO05D000004 1.9e-20 104.4 265 30.6
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 8.9e-18 95.5 146 35.6
SGA_v2.0_scaffold250G45022 Striga asiatica HOM05D000003 ORTHO05D000004 2.6e-17 94.0 174 31.0
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 1.3e-16 91.7 164 32.9
SGA_v2.0_scaffold279G46783 Striga asiatica HOM05D005209 ORTHO05D006188 8.4e-16 89.0 340 24.4
SGA_v2.0_scaffold16G07893 Striga asiatica HOM05D016777 ORTHO05D026198 1.7e-13 81.3 130 35.4
SGA_v2.0_scaffold382G50402 Striga asiatica HOM05D000003 ORTHO05D000004 6.6e-13 79.3 224 27.7
SGA_v2.0_scaffold335G49110 Striga asiatica HOM05D001364 ORTHO05D001316 9.6e-12 75.5 136 33.1
SGA_v2.0_scaffold275G46581 Striga asiatica HOM05D000003 ORTHO05D000004 2.1e-11 74.3 54 64.8
Atru.chr3.3937 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-11 73.6 85 47.1
Atru.chr4.50 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-11 72.8 86 41.9
SGA_v2.0_scaffold380G50369 Striga asiatica HOM05D010565 ORTHO05D011213 1.4e-10 71.6 170 26.5
SGA_v2.0_scaffold95G28813 Striga asiatica HOM05D000003 ORTHO05D000004 1.4e-10 71.6 119 34.5
SGA_v2.0_scaffold17G08062 Striga asiatica HOM05D000003 ORTHO05D000006 3.1e-10 70.5 167 28.1
SGA_v2.0_scaffold23G10182 Striga asiatica HOM05D010565 ORTHO05D011213 4.0e-10 70.1 285 24.6
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-09 68.6 107 31.8
SGA_v2.0_scaffold191G40478 Striga asiatica HOM05D000047 ORTHO05D000044 1.2e-09 68.6 56 53.6
SGA_v2.0_scaffold649G53358 Striga asiatica HOM05D056663 ORTHO05D402473 1.2e-09 68.6 119 34.5
CANSAT78G0894 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-09 68.2 133 30.1
SGA_v2.0_scaffold80G25827 Striga asiatica HOM05D016832 ORTHO05D000044 1.5e-09 68.2 48 58.3
TAR256G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.5e-09 68.2 171 28.7
Atru.chr11.920 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-09 67.0 55 52.7
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 3.4e-09 67.0 54 51.9
SGA_v2.0_scaffold14G07070 Striga asiatica HOM05D000003 ORTHO05D000004 4.4e-09 66.6 162 29.6
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 5.8e-09 66.2 145 29.7
Atru.chr12.2439 Acer truncatum HOM05D000003 ORTHO05D000004 7.6e-09 65.9 54 51.9
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 7.6e-09 65.9 49 55.1
vmacro00928 Vaccinium macrocarpon HOM05D000042 ORTHO05D008481 7.6e-09 65.9 96 35.4
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 9.9e-09 65.5 139 28.8
QL02p011410 Quercus lobata HOM05D000003 ORTHO05D000004 9.9e-09 65.5 99 33.3
QL04p082656 Quercus lobata HOM05D000003 ORTHO05D000167 1.3e-08 65.1 86 38.4
SGA_v2.0_scaffold94G28593 Striga asiatica HOM05D016832 ORTHO05D000004 1.3e-08 65.1 45 60.0
Nn6g35689 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.7e-08 64.7 128 32.0
Atru.chr1.2568 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-08 64.3 65 43.1
TWI09G0223 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.2e-08 64.3 62 45.2
Atru.chr5.2535 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-08 63.9 70 42.9
Atru.chr13.1500 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-08 63.2 70 40.0
TPR.G7198 Trifolium pratense HOM05D000003 ORTHO05D000004 4.9e-08 63.2 115 29.6
Atru.chr4.2116 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-08 62.8 48 56.2
CANSAT64G0596 Cannabis sativa HOM05D000003 ORTHO05D000167 6.4e-08 62.8 180 27.2
Rhsim08G0124600 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.4e-08 62.4 75 46.7
SGA_v2.0_scaffold160G37765 Striga asiatica HOM05D016777 ORTHO05D011213 8.4e-08 62.4 56 53.6
SGA_v2.0_scaffold241G44220 Striga asiatica HOM05D000003 ORTHO05D000004 8.4e-08 62.4 67 47.8
Atru.chr11.155 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 62.0 54 44.4
Atru.chr5.1622 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-07 62.0 54 51.9
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 1.1e-07 62.0 73 35.6
QL04p043087 Quercus lobata HOM05D000003 ORTHO05D000004 1.1e-07 62.0 174 27.0
Atru.chr3.1907 Acer truncatum HOM05D000540 ORTHO05D000681 1.4e-07 61.6 49 46.9
SGA_v2.0_scaffold62G21450 Striga asiatica HOM05D016777 ORTHO05D012297 1.4e-07 61.6 68 42.6
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-07 61.2 74 41.9
Atru.chr3.2627 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-07 61.2 95 33.7
Atru.chr7.811 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-07 61.2 55 43.6
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 61.2 83 34.9
CANSAT21G2476 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 61.2 104 29.8
CANSAT54G2929 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-07 61.2 64 40.6
RcHm_v2.0_Chr1g0324011 Rosa chinensis HOM05D000003 ORTHO05D000004 1.9e-07 61.2 97 33.0
Atru.chr6.887 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-07 60.8 54 50.0
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 2.4e-07 60.8 48 58.3
Rhsim13G0170800 Rhododendron simsii HOM05D000101 ORTHO05D000089 2.4e-07 60.8 54 50.0
Atru.chr1.2551 Acer truncatum HOM05D000003 ORTHO05D000004 3.2e-07 60.5 168 28.6
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 3.2e-07 60.5 54 48.1
CANSAT01G0249 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-07 60.1 79 34.2
SGA_v2.0_scaffold22G09699 Striga asiatica HOM05D000003 ORTHO05D000004 4.2e-07 60.1 65 43.1
SGA_v2.0_scaffold244G44341 Striga asiatica HOM05D000003 ORTHO05D000004 4.2e-07 60.1 76 36.8
Atru.chr10.1036 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-07 59.7 54 44.4
Atru.chr6.490 Acer truncatum HOM05D000003 ORTHO05D000004 5.4e-07 59.7 217 23.5
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-07 59.7 179 26.3
CANSAT56G2299 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-07 59.7 56 46.4
FvH4_5g37180 Fragaria vesca HOM05D000003 ORTHO05D011454 5.4e-07 59.7 294 23.1
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-07 59.3 56 42.9
CANSAT56G2371 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-07 59.3 62 35.5
Atru.chr13.1582 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-07 58.9 50 50.0
Atru.chr3.2165 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-07 58.9 49 49.0
Atru.chr4.3089 Acer truncatum HOM05D000003 ORTHO05D000126 9.3e-07 58.9 86 36.0
Atru.chr5.2450 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-07 58.9 74 39.2
Atru.chr6.710 Acer truncatum HOM05D000003 ORTHO05D000004 9.3e-07 58.9 53 41.5
QL07p038559 Quercus lobata HOM05D000003 ORTHO05D000167 9.3e-07 58.9 53 50.9
Rhsim01G0076000 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.3e-07 58.9 69 44.9
SGA_v2.0_scaffold298G47652 Striga asiatica HOM05D016832 ORTHO05D000004 9.3e-07 58.9 60 48.3
SGA_v2.0_scaffold52G18930 Striga asiatica HOM05D035048 ORTHO05D012821 9.3e-07 58.9 57 42.1
TPR.G37077 Trifolium pratense HOM05D000003 ORTHO05D000004 9.3e-07 58.9 74 35.1
Atru.chr1.1940 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 58.5 51 51.0
Atru.chr8.1381 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-06 58.5 55 41.8
CANSAT25G1969 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 58.5 112 27.7
Nn1g02030 Nelumbo nucifera HOM05D000003 ORTHO05D004093 1.2e-06 58.5 54 46.3
QL03p019721 Quercus lobata HOM05D000003 ORTHO05D000004 1.2e-06 58.5 49 53.1
SGA_v2.0_scaffold76G25079 Striga asiatica HOM05D009140 ORTHO05D000004 1.2e-06 58.5 135 30.4
TWI12G0720 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.2e-06 58.5 50 42.0
Atru.chr2.2006 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 58.2 83 33.7
Atru.chr6.785 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 58.2 66 39.4
CANSAT11G0192 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 58.2 163 26.4
CANSAT11G1313 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 58.2 163 26.4
CANSAT25G1225 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 58.2 90 31.1
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 58.2 59 42.4
Medtr1g033950 Medicago truncatula HOM05D000003 ORTHO05D012297 1.6e-06 58.2 78 33.3
SGA_v2.0_scaffold102G29912 Striga asiatica HOM05D016832 ORTHO05D402802 1.6e-06 58.2 60 43.3
CANSAT56G2527 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 57.8 155 27.1
FvH4_6g18902 Fragaria vesca HOM05D000003 ORTHO05D010713 2.1e-06 57.8 56 41.1
Lj2P334T7 Lonicera japonica HOM05D000003 ORTHO05D000004 2.1e-06 57.8 56 41.1
MD06G1107000 Malus domestica HOM05D000003 ORTHO05D000004 2.1e-06 57.8 54 48.1
Rhsim05G0208700 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.1e-06 57.8 54 48.1
Atru.chr2.2430 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-06 57.4 54 48.1
CANSAT11G2463 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 57.4 56 42.9
CANSAT54G0092 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-06 57.4 56 44.6
CiPaw.14G039600 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.7e-06 57.4 59 50.8
CiPaw.15G073500 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.7e-06 57.4 96 38.5
FvH4_4g22682 Fragaria vesca HOM05D000003 ORTHO05D011656 2.7e-06 57.4 68 38.2
CSS0014223 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 3.5e-06 57.0 113 32.7
CSS0046159 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 3.5e-06 57.0 113 32.7
CANSAT80G2601 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 57.0 65 41.5
Lj6P383T11 Lonicera japonica HOM05D000003 ORTHO05D000004 3.5e-06 57.0 52 46.2
Manes.10G125312 Manihot esculenta HOM05D000003 ORTHO05D000167 3.5e-06 57.0 125 29.6
RhsimUnG0010200 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.5e-06 57.0 58 46.6
TWI31G0724 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.5e-06 57.0 138 27.5
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-06 56.6 66 40.9
CANSAT64G1526 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 56.6 83 32.5
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-06 56.6 85 42.4
QL04p068623 Quercus lobata HOM05D000003 ORTHO05D000004 4.6e-06 56.6 69 36.2
SGA_v2.0_scaffold242G44251 Striga asiatica HOM05D023911 ORTHO05D000004 4.6e-06 56.6 51 47.1
Atru.chr1.2596 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-06 56.2 72 34.7
Atru.chr3.1772 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-06 56.2 48 43.8
FvH4_5g18832 Fragaria vesca HOM05D000003 ORTHO05D000006 6.0e-06 56.2 48 47.9
Rhsim05G0074900 Rhododendron simsii HOM05D000542 ORTHO05D000202 6.0e-06 56.2 55 45.5
Atru.chr11.634 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 55.8 71 36.6
Atru.chr11.973 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 55.8 86 30.2
Atru.chr13.1151 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 55.8 95 29.5
Atru.chr3.2272 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 55.8 162 24.1
Atru.chr4.1290 Acer truncatum HOM05D000003 ORTHO05D000004 7.8e-06 55.8 68 35.3
CANSAT11G0402 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-06 55.8 83 36.1
CANSAT11G2301 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-06 55.8 112 28.6
CANSAT11G2368 Cannabis sativa HOM05D000003 ORTHO05D000167 7.8e-06 55.8 95 30.5
CANSAT21G0772 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-06 55.8 63 42.9
COL.COLO4_25871 Corchorus olitorius HOM05D000003 ORTHO05D017149 7.8e-06 55.8 55 47.3
FvH4_6g33631 Fragaria vesca HOM05D000003 ORTHO05D004145 7.8e-06 55.8 222 23.4
QL01p018735 Quercus lobata HOM05D000003 ORTHO05D000004 7.8e-06 55.8 120 32.5
SGA_v2.0_scaffold124G33583 Striga asiatica HOM05D007389 ORTHO05D009400 7.8e-06 55.8 148 32.4
SGA_v2.0_scaffold58G20592 Striga asiatica HOM05D000003 ORTHO05D017149 7.8e-06 55.8 67 38.8
TAR273G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 7.8e-06 55.8 70 38.6


User provided reference genes

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