Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold280G46829 Striga asiatica HOM05D006435 ORTHO05D008262 1.4e-165 586.3 296 100.0
SalBow4G2069 Salvia bowleyana HOM05D006435 ORTHO05D008262 1.2e-118 430.3 298 77.5
MSTRG.11716 Avicennia marina HOM05D006435 ORTHO05D008262 2.0e-113 412.9 291 74.6
Migut.A00245 Erythranthe guttata HOM05D006435 ORTHO05D008262 8.3e-107 391.0 295 72.2
CSS0040195 Camellia sinensis var. sinensis HOM05D006435 ORTHO05D008262 3.6e-102 375.6 296 68.9
Oeu063249.1 Olea europaea HOM05D006435 ORTHO05D008262 2.6e-100 369.4 214 83.6
arahy.Tifrunner.gnm1.ann1.463B8J Arachis hypogaea HOM05D006435 ORTHO05D008262 2.9e-99 365.9 256 72.3
vmacro11085 Vaccinium macrocarpon HOM05D006435 ORTHO05D008262 2.9e-99 365.9 303 65.0
arahy.Tifrunner.gnm1.ann1.W16L9Q Arachis hypogaea HOM05D006435 ORTHO05D008262 8.4e-99 364.4 278 69.1
Cc00_g17690 Coffea canephora HOM05D006435 ORTHO05D008262 8.4e-99 364.4 263 73.0
TWI32G0701 Tripterygium wilfordii HOM05D006435 ORTHO05D008262 7.1e-98 361.3 282 67.0
Hma1.2p1_0140F.1_g063520 Hydrangea macrophylla HOM05D006435 ORTHO05D008262 1.2e-97 360.5 271 70.1
CiPaw.07G207200 Carya illinoinensis HOM05D006435 ORTHO05D008262 1.6e-97 360.1 270 68.1
Rhsim02G0182200 Rhododendron simsii HOM05D006435 ORTHO05D008262 2.1e-97 359.8 214 81.3
QL12p026394 Quercus lobata HOM05D006435 ORTHO05D008262 3.5e-97 359.0 241 73.0
MELO3C003582.2 Cucumis melo HOM05D006435 ORTHO05D008262 4.6e-97 358.6 216 78.7
Potri.018G037300 Populus trichocarpa HOM05D006435 ORTHO05D008262 4.6e-97 358.6 212 79.7
THA.LOC104815054 Tarenaya hassleriana HOM05D006435 ORTHO05D008262 5.1e-96 355.1 302 62.3
Manes.03G062800 Manihot esculenta HOM05D006435 ORTHO05D008262 1.5e-95 353.6 212 79.7
PGSC0003DMG400014515 Solanum tuberosum HOM05D006435 ORTHO05D008262 1.9e-95 353.2 214 80.4
Actinidia31221 Actinidia chinensis HOM05D006435 ORTHO05D008262 3.3e-95 352.4 284 63.4
CANSAT80G2129 Cannabis sativa HOM05D006435 ORTHO05D008262 4.3e-95 352.1 209 79.4
Solyc08g068270.3 Solanum lycopersicum HOM05D006435 ORTHO05D008262 4.3e-95 352.1 284 66.9
GSVIVG01035670001 Vitis vinifera HOM05D006435 ORTHO05D008262 4.3e-95 352.1 272 65.4
Ciclev10009372m.g Citrus clementina HOM05D006435 ORTHO05D008262 5.6e-95 351.7 209 80.4
Sopen08g022120 Solanum pennellii HOM05D006435 ORTHO05D008262 7.3e-95 351.3 214 80.8
Hund19545 Selenicereus undatus HOM05D006435 ORTHO05D008262 1.2e-94 350.5 258 69.0
Sp2g21890 Schrenkiella parvula HOM05D006435 ORTHO05D008262 1.6e-94 350.1 209 80.4
AL6G37530 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 2.1e-94 349.7 214 78.5
BcaC03g17897 Brassica carinata HOM05D006435 ORTHO05D008262 2.8e-94 349.4 214 77.6
C02p59390 Brassica napus HOM05D006435 ORTHO05D008262 2.8e-94 349.4 214 77.6
CsaV3_3G047410 Cucumis sativus L. HOM05D006435 ORTHO05D008262 3.6e-94 349.0 210 79.5
Glyma.17G190400 Glycine max HOM05D006435 ORTHO05D008262 3.6e-94 349.0 215 78.6
Lj1g0009240 Lotus japonicus HOM05D006435 ORTHO05D008262 3.6e-94 349.0 215 76.3
Duzib187G0700 Durio zibethinus HOM05D006435 ORTHO05D008262 4.7e-94 348.6 276 65.9
Lalb_Chr22g0360991 Lupinus albus HOM05D006435 ORTHO05D008262 4.7e-94 348.6 209 80.4
Medtr1g008300 Medicago truncatula HOM05D006435 ORTHO05D008262 4.7e-94 348.6 216 77.8
Eucgr.C01580 Eucalyptus grandis HOM05D006435 ORTHO05D008262 6.2e-94 348.2 276 64.9
VMungo0647G0379 Vigna mungo HOM05D006435 ORTHO05D008262 6.2e-94 348.2 262 67.9
CAN.G797.1 Capsicum annuum HOM05D006435 ORTHO05D008262 8.1e-94 347.8 272 67.6
Lj8C603T5 Lonicera japonica HOM05D006435 ORTHO05D008262 8.1e-94 347.8 275 67.3
BraA02t08928Z Brassica rapa HOM05D006435 ORTHO05D008262 1.1e-93 347.4 303 61.1
Cpa.g.sc78.80 Carica papaya HOM05D006435 ORTHO05D008262 1.1e-93 347.4 236 69.5
Thecc.09G039800 Theobroma cacao HOM05D006435 ORTHO05D008262 1.1e-93 347.4 289 64.0
BcaB07g29986 Brassica carinata HOM05D006435 ORTHO05D008262 1.4e-93 347.1 269 65.4
Nn2g11721 Nelumbo nucifera HOM05D006435 ORTHO05D008262 1.4e-93 347.1 215 78.6
DCAR_007705 Daucus carota HOM05D006435 ORTHO05D008262 1.8e-93 346.7 212 78.3
Ah.16g105260 Amaranthus hybridus HOM05D006435 ORTHO05D008262 3.1e-93 345.9 224 75.9
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 4.0e-93 345.5 244 71.3
Aa31LG11G4730 Aethionema arabicum HOM05D006435 ORTHO05D008262 5.2e-93 345.1 212 77.8
CARHR187680 Cardamine hirsuta HOM05D006435 ORTHO05D008262 5.2e-93 345.1 214 76.6
AUR62009330 Chenopodium quinoa HOM05D006435 ORTHO05D008262 5.2e-93 345.1 219 77.6
Gohir.D05G050300 Gossypium hirsutum HOM05D006435 ORTHO05D008262 5.2e-93 345.1 215 79.1
Carub.0006s2947 Capsella rubella HOM05D006435 ORTHO05D008262 1.2e-92 344.0 255 67.1
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 2.0e-92 343.2 301 63.5
unitig_0.g2807 Utricularia gibba HOM05D006435 ORTHO05D008262 2.0e-92 343.2 231 74.9
AUR62023016 Chenopodium quinoa HOM05D006435 ORTHO05D008262 2.6e-92 342.8 209 80.4
Gohir.A05G048400 Gossypium hirsutum HOM05D006435 ORTHO05D008262 3.4e-92 342.4 215 78.6
Gorai.009G051800 Gossypium raimondii HOM05D006435 ORTHO05D008262 3.4e-92 342.4 216 78.7
Nitab4.5_0003338g0080 Nicotiana tabacum HOM05D006435 ORTHO05D008262 3.4e-92 342.4 281 65.8
HPP92_001799 Vanilla planifolia HOM05D006435 ORTHO05D008262 4.4e-92 342.0 242 71.1
EL10Ac2g04073 Beta vulgaris HOM05D006435 ORTHO05D008262 5.8e-92 341.7 215 78.1
Sed0025420 Sechium edule HOM05D006435 ORTHO05D008262 5.8e-92 341.7 209 77.5
Thhalv10004692m.g Eutrema salsugineum HOM05D006435 ORTHO05D008262 1.3e-91 340.5 214 75.7
Atru.chr7.2160 Acer truncatum HOM05D006435 ORTHO05D008262 1.7e-91 340.1 209 78.0
HanXRQChr02g0048091 Helianthus annuus HOM05D006435 ORTHO05D008262 1.7e-91 340.1 225 74.7
Lsat_1_v5_gn_6_10980 Lactuca sativa HOM05D006435 ORTHO05D008262 1.7e-91 340.1 215 77.7
MD15G1097700 Malus domestica HOM05D006435 ORTHO05D008262 1.7e-91 340.1 267 67.4
TPR.G12017 Trifolium pratense HOM05D006435 ORTHO05D008262 1.7e-91 340.1 216 77.3
Prupe.1G452600 Prunus persica HOM05D006435 ORTHO05D008262 2.2e-91 339.7 292 65.4
Cfa013344 Carpinus fangiana HOM05D006435 ORTHO05D008262 8.4e-91 337.8 224 74.1
MBI01_g28042_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 1.4e-90 337.0 244 67.6
Phvul.001G078600 Phaseolus vulgaris HOM05D006435 ORTHO05D008262 3.2e-90 335.9 210 79.0
FAN27G2865 Fragaria x ananassa HOM05D006435 ORTHO05D008262 9.3e-90 334.3 265 66.4
PSO782G5114 Papaver somniferum HOM05D006435 ORTHO05D008262 4.6e-89 332.0 216 75.9
PSO832G3386 Papaver somniferum HOM05D006435 ORTHO05D008262 6.0e-89 331.6 216 75.9
ATR0315G035 Amborella trichopoda HOM05D006435 ORTHO05D008262 2.5e-87 326.2 209 76.6
CDE05G2477 Ceratophyllum demersum HOM05D006435 ORTHO05D008262 2.5e-87 326.2 215 72.6
FvH4_2g36120 Fragaria vesca HOM05D006435 ORTHO05D008262 1.3e-86 323.9 242 68.2
RcHm_v2.0_Chr6g0305751 Rosa chinensis HOM05D006435 ORTHO05D008262 2.1e-86 323.2 211 74.9
VMungo1215G1854 Vigna mungo HOM05D006435 ORTHO05D008262 2.1e-86 323.2 192 80.2
ECA233G4084 Erigeron canadensis HOM05D006435 ORTHO05D008262 1.4e-85 320.5 202 79.7
Sc09g0009090 Simmondsia chinensis HOM05D006435 ORTHO05D008262 2.6e-84 316.2 209 72.7
SEGI_13627 Sequoiadendron giganteum HOM05D006435 ORTHO05D008262 1.9e-82 310.1 251 63.7
FAN20G0337 Fragaria x ananassa HOM05D006435 ORTHO05D008262 2.5e-79 299.7 195 75.9
COL.COLO4_18696 Corchorus olitorius HOM05D006435 ORTHO05D008262 1.6e-78 297.0 214 70.6
Zm00001eb350490 Zea mays HOM05D006435 ORTHO05D008262 9.0e-77 291.2 221 63.8
Os05g0220600 Oryza sativa ssp. japonica HOM05D006435 ORTHO05D008262 7.6e-76 288.1 212 66.5
Mapoly0109s0030 Marchantia polymorpha HOM05D006435 ORTHO05D008262 1.4e-74 283.9 202 70.3
AagrBONN_evm.TU.Sc2ySwM_117.700 Anthoceros agrestis HOM05D006435 ORTHO05D008262 2.4e-74 283.1 194 72.2
Haze_21849 Corylus avellana HOM05D006435 ORTHO05D008262 3.2e-74 282.7 164 84.1
Eucgr.L02138 Eucalyptus grandis HOM05D006435 ORTHO05D008262 9.3e-74 281.2 276 56.5
TAR624G0864 Trochodendron aralioides HOM05D006435 ORTHO05D008262 9.3e-74 281.2 159 86.2
PGR031G0325 Punica granatum HOM05D006435 ORTHO05D008262 3.0e-72 276.2 224 64.7
Pp3c15_3110 Physcomitrium patens HOM05D006435 ORTHO05D008262 5.1e-72 275.4 211 66.4
SMO116G0425 Selaginella moellendorffii HOM05D006435 ORTHO05D008262 3.4e-68 262.7 269 53.9
Psat6g034280 Pisum sativum HOM05D006435 ORTHO05D008262 5.8e-68 261.9 163 76.7
Solyc10g012245.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 2.9e-67 259.6 213 63.4
AL6G37520 Arabidopsis lyrata HOM05D006435 ORTHO05D008262 2.7e-65 253.1 228 58.8
Nitab4.5_0000052g0140 Nicotiana tabacum HOM05D006435 ORTHO05D008262 2.7e-65 253.1 278 54.0
Carub.0006s2351 Capsella rubella HOM05D006435 ORTHO05D008262 5.7e-63 245.4 214 55.6
AT5G25640 Arabidopsis thaliana HOM05D006435 ORTHO05D008262 9.6e-63 244.6 217 57.6
ClCG11G014010 Citrullus lanatus HOM05D006435 ORTHO05D008262 2.0e-60 236.9 310 47.4
Ciclev10010273m.g Citrus clementina HOM05D006435 ORTHO05D008262 1.3e-56 224.2 155 71.6
Ca_12811_v3 Cicer arietinum L. HOM05D006435 ORTHO05D008262 2.8e-54 216.5 141 76.6
Peaxi162Scf00523g00529 Petunia axillaris HOM05D006435 ORTHO05D008262 1.2e-52 211.1 132 81.8
MBI01_g28043_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 2.0e-52 210.3 214 55.1
PSO782G5630 Papaver somniferum HOM05D006435 ORTHO05D008262 4.8e-46 189.1 196 48.5
Glyma.14G141900 Glycine max HOM05D006435 ORTHO05D008262 2.4e-45 186.8 110 86.4
Sabra18G0038100 Salix brachista HOM05D006435 ORTHO05D008262 2.2e-43 180.3 110 78.2
PRCOL_00005434 Prasinoderma coloniale HOM05D006435 ORTHO05D008262 1.4e-40 171.0 182 47.8
Cre16.g664801 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D008262 3.1e-37 159.8 205 43.4
PSO782G2728 Papaver somniferum HOM05D006435 ORTHO05D008262 5.0e-35 152.5 188 43.1
Peaxi162Scf00523g00528 Petunia axillaris HOM05D006435 ORTHO05D008262 6.7e-32 142.1 164 51.2
A02p39610 Brassica napus HOM05D006435 ORTHO05D008262 5.7e-31 139.0 141 51.8
Solyc10g012295.1 Solanum lycopersicum HOM05D006435 ORTHO05D008262 7.7e-28 128.6 91 73.6
FAN15G2703 Fragaria x ananassa HOM05D006435 ORTHO05D008262 6.5e-27 125.6 78 66.7
PSO832G3154 Papaver somniferum HOM05D006435 ORTHO05D008262 1.1e-26 124.8 196 39.3
MD08G1118500 Malus domestica HOM05D006435 ORTHO05D008262 3.7e-22 109.8 72 75.0
MBI01_g46977_MAGBIO Magnolia biondii HOM05D006435 ORTHO05D008262 1.8e-16 90.9 76 65.8
Glyma.14G142000 Glycine max HOM05D006435 ORTHO05D008262 1.2e-09 68.2 47 61.7
Lalb_Chr22g0350911 Lupinus albus HOM05D000659 ORTHO05D000505 1.2e-09 68.2 168 32.7
Cre11.g467648 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D143948 1.4e-08 64.7 98 33.7
Cre12.g546200 Chlamydomonas reinhardtii HOM05D006435 ORTHO05D146483 4.0e-08 63.2 181 30.4
Haze_21850 Corylus avellana HOM05D006435 ORTHO05D008262 4.0e-08 63.2 71 45.1
Lalb_Chr14g0373771 Lupinus albus HOM05D000659 ORTHO05D000505 6.8e-08 62.4 164 32.3
VMungo1080G0290 Vigna mungo HOM05D000659 ORTHO05D000505 1.2e-07 61.6 166 31.3
Os04g0569300 Oryza sativa ssp. japonica HOM05D000659 ORTHO05D000505 5.7e-07 59.3 93 34.4
Ca_12801_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 7.5e-07 58.9 44 61.4
PGR004G1090 Punica granatum HOM05D000659 ORTHO05D000505 7.5e-07 58.9 151 30.5
Glyma.15G009000 Glycine max HOM05D000659 ORTHO05D000505 9.8e-07 58.5 167 31.1
AUR62001774 Chenopodium quinoa HOM05D000659 ORTHO05D000505 1.3e-06 58.2 165 28.5
Lalb_Chr19g0130981 Lupinus albus HOM05D000659 ORTHO05D000505 1.3e-06 58.2 159 30.2
vmacro20163 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 1.3e-06 58.2 157 31.2
Ca_01062_v3 Cicer arietinum L. HOM05D000659 ORTHO05D000608 1.7e-06 57.8 168 31.0
Lalb_Chr03g0034381 Lupinus albus HOM05D000659 ORTHO05D000505 1.7e-06 57.8 159 28.9
Medtr2g103600 Medicago truncatula HOM05D000659 ORTHO05D000505 1.7e-06 57.8 154 30.5
Potri.006G086300 Populus trichocarpa HOM05D000659 ORTHO05D000505 1.7e-06 57.8 143 30.1
Cc06_g02550 Coffea canephora HOM05D000659 ORTHO05D000505 2.2e-06 57.4 148 31.8
Lj3g0014536 Lotus japonicus HOM05D000659 ORTHO05D000505 2.2e-06 57.4 168 31.0
unitig_26.g9193 Utricularia gibba HOM05D000659 ORTHO05D000505 2.9e-06 57.0 148 30.4
Medtr1g101310 Medicago truncatula HOM05D000659 ORTHO05D000505 3.7e-06 56.6 165 29.1
Phvul.005G176900 Phaseolus vulgaris HOM05D000659 ORTHO05D000505 3.7e-06 56.6 153 30.7
Psat5g301800 Pisum sativum HOM05D000659 ORTHO05D000505 3.7e-06 56.6 169 30.8
Rhsim05G0193700 Rhododendron simsii HOM05D000659 ORTHO05D000505 3.7e-06 56.6 157 29.9
PGSC0003DMG400014321 Solanum tuberosum HOM05D000659 ORTHO05D000505 3.7e-06 56.6 160 29.4
TPR.G37233 Trifolium pratense HOM05D000659 ORTHO05D000505 3.7e-06 56.6 168 30.4
AL1G24340 Arabidopsis lyrata HOM05D000659 ORTHO05D000505 4.9e-06 56.2 150 30.0
ECA232G2175 Erigeron canadensis HOM05D000659 ORTHO05D000505 4.9e-06 56.2 162 28.4
Zm00001eb164560 Zea mays HOM05D000659 ORTHO05D000505 4.9e-06 56.2 177 25.4
MSTRG.5657 Avicennia marina HOM05D000659 ORTHO05D000505 6.4e-06 55.8 152 28.9
BcaB01g06352 Brassica carinata HOM05D000659 ORTHO05D000505 6.4e-06 55.8 156 32.1
BolC9t59681H Brassica oleracea HOM05D000659 ORTHO05D000505 6.4e-06 55.8 156 30.8
AUR62009562 Chenopodium quinoa HOM05D000659 ORTHO05D000505 6.4e-06 55.8 167 27.5
COL.COLO4_05258 Corchorus olitorius HOM05D000659 ORTHO05D000505 6.4e-06 55.8 156 28.2
SEGI_21055 Sequoiadendron giganteum HOM05D000659 ORTHO05D000505 6.4e-06 55.8 154 30.5
Solyc03g026080.3 Solanum lycopersicum HOM05D000659 ORTHO05D000505 6.4e-06 55.8 160 28.8
Sopen03g004920 Solanum pennellii HOM05D000659 ORTHO05D000505 6.4e-06 55.8 160 28.8
arahy.Tifrunner.gnm1.ann1.SNC62Y Arachis hypogaea HOM05D000659 ORTHO05D000505 8.3e-06 55.5 146 32.9
arahy.Tifrunner.gnm1.ann1.VFZ35Y Arachis hypogaea HOM05D000659 ORTHO05D000505 8.3e-06 55.5 146 32.9
FAN26G1534 Fragaria x ananassa HOM05D000659 ORTHO05D000505 8.3e-06 55.5 139 29.5
Gohir.D09G150900 Gossypium hirsutum HOM05D000659 ORTHO05D000505 8.3e-06 55.5 142 31.0
Gorai.006G172200 Gossypium raimondii HOM05D000659 ORTHO05D000505 8.3e-06 55.5 142 31.0
Hund04948 Selenicereus undatus HOM05D000659 ORTHO05D000505 8.3e-06 55.5 160 28.1
vmacro08649 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 8.3e-06 55.5 143 30.1
vmacro09850 Vaccinium macrocarpon HOM05D000659 ORTHO05D000505 8.3e-06 55.5 156 31.4


User provided reference genes

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