Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold275G46557 Striga asiatica HOM05D002849 ORTHO05D009472 1.6e-52 209.1 108 100.0
Migut.C00918 Erythranthe guttata HOM05D002849 ORTHO05D009472 5.3e-35 151.0 113 73.5
Dinv31914 Davidia involucrata HOM05D000894 ORTHO05D002325 1.3e-33 146.4 108 72.2
CAN.G311.94 Capsicum annuum HOM05D002849 ORTHO05D009472 1.9e-32 142.5 112 68.8
Sopen04g035780 Solanum pennellii HOM05D002849 ORTHO05D009472 4.2e-32 141.4 108 70.4
RcHm_v2.0_Chr6g0303941 Rosa chinensis HOM05D002849 ORTHO05D009472 5.5e-32 141.0 105 70.5
unitig_82.g27114 Utricularia gibba HOM05D002849 ORTHO05D009472 1.2e-31 139.8 96 72.9
Gorai.010G000900 Gossypium raimondii HOM05D002849 ORTHO05D009472 2.1e-31 139.0 108 67.6
Gohir.A06G000700 Gossypium hirsutum HOM05D002849 ORTHO05D009472 2.7e-31 138.7 108 67.6
COL.COLO4_21616 Corchorus olitorius HOM05D002849 ORTHO05D009472 7.9e-31 137.1 108 67.6
PGSC0003DMG400009966 Solanum tuberosum HOM05D002849 ORTHO05D009472 7.9e-31 137.1 111 66.7
vmacro04390 Vaccinium macrocarpon HOM05D002849 ORTHO05D009472 7.9e-31 137.1 107 70.1
Duzib093G0992 Durio zibethinus HOM05D002849 ORTHO05D009472 2.3e-30 135.6 108 66.7
Ciclev10002910m.g Citrus clementina HOM05D002849 ORTHO05D009472 3.9e-30 134.8 109 67.9
MD08G1004900 Malus domestica HOM05D002849 ORTHO05D009472 5.1e-30 134.4 106 67.9
Prupe.1G357000 Prunus persica HOM05D002849 ORTHO05D009472 8.8e-30 133.7 104 68.3
Nitab4.5_0000588g0290 Nicotiana tabacum HOM05D002849 ORTHO05D009472 1.1e-29 133.3 111 67.6
Manes.05G140800 Manihot esculenta HOM05D002849 ORTHO05D009472 1.5e-29 132.9 105 66.7
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 4.3e-29 131.3 106 68.9
PGR102G2189 Punica granatum HOM05D002849 ORTHO05D009472 4.3e-29 131.3 105 64.8
Solyc12g094480.3 Solanum lycopersicum HOM05D002849 ORTHO05D009472 5.7e-29 131.0 110 63.6
Sopen12g031370 Solanum pennellii HOM05D002849 ORTHO05D009472 5.7e-29 131.0 110 63.6
Actinidia37963 Actinidia chinensis HOM05D002849 ORTHO05D009472 9.7e-29 130.2 102 69.6
Rhsim07G0252900 Rhododendron simsii HOM05D002849 ORTHO05D009472 1.3e-28 129.8 107 68.2
SalBow7G2120 Salvia bowleyana HOM05D002849 ORTHO05D009472 1.7e-28 129.4 110 62.7
PGSC0003DMG400029324 Solanum tuberosum HOM05D002849 ORTHO05D009472 1.7e-28 129.4 110 62.7
Nitab4.5_0003149g0010 Nicotiana tabacum HOM05D002849 ORTHO05D009472 2.2e-28 129.0 111 64.0
ClCG05G015240 Citrullus lanatus HOM05D002849 ORTHO05D009472 3.7e-28 128.3 107 66.4
MELO3C017006.2 Cucumis melo HOM05D002849 ORTHO05D009472 6.3e-28 127.5 107 65.4
Nitab4.5_0000699g0200 Nicotiana tabacum HOM05D002849 ORTHO05D009472 8.2e-28 127.1 110 63.6
Thecc.08G055000 Theobroma cacao HOM05D002849 ORTHO05D009472 8.2e-28 127.1 104 64.4
CSS0028449 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D009472 1.1e-27 126.7 108 64.8
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.1e-27 126.7 107 64.5
Peaxi162Scf00174g01410 Petunia axillaris HOM05D002849 ORTHO05D009472 1.1e-27 126.7 108 63.0
CANSAT80G0154 Cannabis sativa HOM05D002849 ORTHO05D009472 1.4e-27 126.3 105 63.8
CANSAT80G2323 Cannabis sativa HOM05D002849 ORTHO05D009472 1.4e-27 126.3 105 63.8
Cc10_g00900 Coffea canephora HOM05D002849 ORTHO05D009472 1.4e-27 126.3 106 64.2
TAR381G0186 Trochodendron aralioides HOM05D002849 ORTHO05D009472 1.8e-27 125.9 107 64.5
Cfa014031 Carpinus fangiana HOM05D002849 ORTHO05D009472 4.1e-27 124.8 106 66.0
Actinidia29779 Actinidia chinensis HOM05D002849 ORTHO05D009472 6.9e-27 124.0 80 77.5
CsaV3_4G037080 Cucumis sativus L. HOM05D002849 ORTHO05D009472 6.9e-27 124.0 107 65.4
CiPaw.08G071000 Carya illinoinensis HOM05D002849 ORTHO05D009472 9.1e-27 123.6 107 62.6
FAN20G1236 Fragaria x ananassa HOM05D002849 ORTHO05D009472 9.1e-27 123.6 105 63.8
Aqoxy5G01064 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 2.6e-26 122.1 108 60.2
Aqoxy5G01070 Aquilegia oxysepala HOM05D002849 ORTHO05D009472 3.4e-26 121.7 108 60.2
Eucgr.H01281 Eucalyptus grandis HOM05D002849 ORTHO05D009472 3.4e-26 121.7 108 63.9
Sed0019383 Sechium edule HOM05D002849 ORTHO05D009472 5.9e-26 120.9 108 60.2
TWI36G1301 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 5.9e-26 120.9 107 60.7
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 5.9e-26 120.9 107 60.7
AL1G33360 Arabidopsis lyrata HOM05D002849 ORTHO05D009472 3.8e-25 118.2 114 57.0
CARHR020890 Cardamine hirsuta HOM05D002849 ORTHO05D009472 3.8e-25 118.2 114 57.0
CDE04G0501 Ceratophyllum demersum HOM05D002849 ORTHO05D009472 3.8e-25 118.2 103 61.2
HanXRQChr08g0215861 Helianthus annuus HOM05D002849 ORTHO05D009472 3.8e-25 118.2 103 61.2
QL02p013572 Quercus lobata HOM05D002849 ORTHO05D009472 3.8e-25 118.2 109 62.4
Sp1g18150 Schrenkiella parvula HOM05D002849 ORTHO05D009472 8.5e-25 117.1 114 56.1
Potri.002G013601 Populus trichocarpa HOM05D002849 ORTHO05D009472 1.1e-24 116.7 105 60.0
HanXRQChr08g0215951 Helianthus annuus HOM05D002849 ORTHO05D009472 1.4e-24 116.3 103 60.2
Atru.chr13.177 Acer truncatum HOM05D002849 ORTHO05D009472 1.9e-24 115.9 111 62.2
Carub.0005s0958 Capsella rubella HOM05D002849 ORTHO05D009472 1.9e-24 115.9 114 54.4
MD11G1257900 Malus domestica HOM05D002849 ORTHO05D009472 1.9e-24 115.9 106 60.4
Thhalv10009140m.g Eutrema salsugineum HOM05D002849 ORTHO05D009472 2.5e-24 115.5 114 55.3
ECA233G1055 Erigeron canadensis HOM05D002849 ORTHO05D009472 3.2e-24 115.2 102 60.8
Lsat_1_v5_gn_8_28281 Lactuca sativa HOM05D002849 ORTHO05D009472 3.2e-24 115.2 105 59.0
AUR62036770 Chenopodium quinoa HOM05D002849 ORTHO05D009472 4.2e-24 114.8 107 57.0
Aa31LG7G4740 Aethionema arabicum HOM05D002849 ORTHO05D009472 5.5e-24 114.4 117 53.0
Ah.00g000480 Amaranthus hybridus HOM05D002849 ORTHO05D009472 5.5e-24 114.4 88 63.6
Sabra02G0010600 Salix brachista HOM05D002849 ORTHO05D009472 5.5e-24 114.4 105 59.0
TWI56G1224 Tripterygium wilfordii HOM05D002849 ORTHO05D009472 7.2e-24 114.0 107 57.0
AUR62013835 Chenopodium quinoa HOM05D002849 ORTHO05D009472 9.4e-24 113.6 107 54.2
DCAR_016751 Daucus carota HOM05D002849 ORTHO05D009472 9.4e-24 113.6 108 57.4
BcaB07g32046 Brassica carinata HOM05D002849 ORTHO05D009472 1.2e-23 113.2 117 53.8
BcaB03g14321 Brassica carinata HOM05D002849 ORTHO05D009472 4.7e-23 111.3 114 54.4
Carub.0001s1990 Capsella rubella HOM05D002849 ORTHO05D009472 6.1e-23 110.9 114 52.6
AT1G20430 Arabidopsis thaliana HOM05D002849 ORTHO05D009472 7.9e-23 110.5 114 53.5
Sc26g0004580 Simmondsia chinensis HOM05D002849 ORTHO05D009472 1.8e-22 109.4 91 61.5
VMungo1309G2595 Vigna mungo HOM05D002849 ORTHO05D009472 1.8e-22 109.4 104 55.8
A07p15680 Brassica napus HOM05D002849 ORTHO05D009472 2.3e-22 109.0 114 53.5
A07p15790 Brassica napus HOM05D002849 ORTHO05D009472 2.3e-22 109.0 114 53.5
BraA07t29306Z Brassica rapa HOM05D002849 ORTHO05D009472 2.3e-22 109.0 114 53.5
Psat5g010840 Pisum sativum HOM05D002849 ORTHO05D009472 2.3e-22 109.0 105 54.3
BcaNung03382 Brassica carinata HOM05D002849 ORTHO05D009472 3.0e-22 108.6 114 53.5
C07p23030 Brassica napus HOM05D002849 ORTHO05D009472 3.0e-22 108.6 114 53.5
BolC7t42844H Brassica oleracea HOM05D002849 ORTHO05D009472 3.0e-22 108.6 114 53.5
Glyma.06G019700 Glycine max HOM05D002849 ORTHO05D009472 3.0e-22 108.6 104 54.8
Glyma.04G019400 Glycine max HOM05D002849 ORTHO05D009472 3.9e-22 108.2 104 56.7
Lj1g0005069 Lotus japonicus HOM05D002849 ORTHO05D009472 3.9e-22 108.2 103 56.3
Nn5g27128 Nelumbo nucifera HOM05D002849 ORTHO05D009472 6.7e-22 107.5 107 57.0
arahy.Tifrunner.gnm1.ann1.501GHP Arachis hypogaea HOM05D002849 ORTHO05D009472 8.8e-22 107.1 91 59.3
EL10Ac2g02687 Beta vulgaris HOM05D002849 ORTHO05D009472 1.1e-21 106.7 110 52.7
Sp5g31300 Schrenkiella parvula HOM05D002849 ORTHO05D009472 2.0e-21 105.9 87 58.6
Phvul.009G021100 Phaseolus vulgaris HOM05D002849 ORTHO05D009472 2.6e-21 105.5 104 54.8
THA.LOC104811451 Tarenaya hassleriana HOM05D002849 ORTHO05D009472 2.6e-21 105.5 116 49.1
Ca_15446_v3 Cicer arietinum L. HOM05D002849 ORTHO05D009472 3.3e-21 105.1 105 55.2
Medtr3g115060 Medicago truncatula HOM05D002849 ORTHO05D009472 3.3e-21 105.1 103 55.3
Lalb_Chr11g0061731 Lupinus albus HOM05D002849 ORTHO05D009472 7.4e-21 104.0 105 50.5
TPR.G38106 Trifolium pratense HOM05D002849 ORTHO05D009472 4.8e-20 101.3 92 57.6
ATR0661G222 Amborella trichopoda HOM05D002849 ORTHO05D009472 1.8e-19 99.4 88 56.8
SHI08004 Sapria himalayana HOM05D002849 ORTHO05D009472 1.8e-19 99.4 89 56.2
VMungo0540G0079 Vigna mungo HOM05D002849 ORTHO05D009472 1.5e-18 96.3 101 51.5
Zm00001eb373140 Zea mays HOM05D002849 ORTHO05D009472 5.5e-16 87.8 90 45.6
Os06g0213900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D009472 1.1e-13 80.1 90 43.3
Lalb_Chr01g0008401 Lupinus albus HOM05D002849 ORTHO05D009472 2.2e-12 75.9 88 45.5
SEGI_39053 Sequoiadendron giganteum HOM05D002849 ORTHO05D009472 1.3e-09 66.6 100 38.0
arahy.Tifrunner.gnm1.ann1.H4T2PX Arachis hypogaea HOM05D002849 ORTHO05D009472 2.5e-08 62.4 71 46.5
arahy.Tifrunner.gnm1.ann1.PLB5QN Arachis hypogaea HOM05D003604 ORTHO05D004110 2.5e-08 62.4 71 46.5
Hma1.2p1_1523F.1_g288770 Hydrangea macrophylla HOM05D002849 ORTHO05D009472 1.6e-07 59.7 52 55.8


User provided reference genes

Program Settings