Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold272G46381 Striga asiatica HOM05D000198 ORTHO05D404840 1.7e-51 205.7 100 100.0
SGA_v2.0_scaffold186G40177 Striga asiatica HOM05D000198 ORTHO05D401703 2.4e-21 105.5 50 98.0
SGA_v2.0_scaffold7G03663 Striga asiatica HOM05D000015 ORTHO05D000984 3.0e-16 88.6 69 66.7
SGA_v2.0_scaffold7G03629 Striga asiatica HOM05D000198 ORTHO05D005702 9.6e-15 83.6 50 76.0
SalBow8G0624 Salvia bowleyana HOM05D000198 ORTHO05D005702 3.4e-12 75.1 50 70.0
SalBow8G1239 Salvia bowleyana HOM05D000198 ORTHO05D005702 3.4e-12 75.1 50 70.0
MSTRG.7092 Avicennia marina HOM05D000198 ORTHO05D005702 1.0e-11 73.6 50 66.0
Cc05_g16560 Coffea canephora HOM05D000198 ORTHO05D005702 1.7e-11 72.8 50 64.0
Dinv42461 Davidia involucrata HOM05D000198 ORTHO05D005702 1.7e-11 72.8 52 63.5
Manes.16G048100 Manihot esculenta HOM05D000198 ORTHO05D005702 2.2e-11 72.4 52 61.5
Migut.M01503 Erythranthe guttata HOM05D000198 ORTHO05D005702 2.9e-11 72.0 50 64.0
unitig_26.g10057 Utricularia gibba HOM05D000198 ORTHO05D005702 3.8e-11 71.6 51 60.8
ECA236G0201 Erigeron canadensis HOM05D000198 ORTHO05D005702 4.9e-11 71.2 50 64.0
Rhsim06G0244300 Rhododendron simsii HOM05D000198 ORTHO05D005702 6.5e-11 70.9 50 62.0
Hma1.2p1_0334F.1_g128390 Hydrangea macrophylla HOM05D000198 ORTHO05D005702 8.4e-11 70.5 50 64.0
Os02g0173900 Oryza sativa ssp. japonica HOM05D000198 ORTHO05D005702 1.1e-10 70.1 52 57.7
Sabra10G0133900 Salix brachista HOM05D000198 ORTHO05D005702 1.1e-10 70.1 69 47.8
Zm00001eb207050 Zea mays HOM05D000198 ORTHO05D005702 1.1e-10 70.1 52 57.7
Lalb_Chr20g0108421 Lupinus albus HOM05D000198 ORTHO05D005702 1.4e-10 69.7 52 57.7
TAR626G1240 Trochodendron aralioides HOM05D000198 ORTHO05D005702 1.4e-10 69.7 52 59.6
Atru.chr1.55 Acer truncatum HOM05D000198 ORTHO05D005702 1.9e-10 69.3 52 57.7
DCAR_032012 Daucus carota HOM05D000198 ORTHO05D005702 2.5e-10 68.9 52 59.6
arahy.Tifrunner.gnm1.ann1.D1NSDN Arachis hypogaea HOM05D000198 ORTHO05D005702 3.2e-10 68.6 52 55.8
TWI38G0157 Tripterygium wilfordii HOM05D000198 ORTHO05D005702 3.2e-10 68.6 50 62.0
arahy.Tifrunner.gnm1.ann1.15VWWC Arachis hypogaea HOM05D000198 ORTHO05D005702 4.2e-10 68.2 52 55.8
Lsat_1_v5_gn_7_110980 Lactuca sativa HOM05D000198 ORTHO05D005702 4.2e-10 68.2 52 57.7
Aqoxy1G01365 Aquilegia oxysepala HOM05D000198 ORTHO05D005702 5.5e-10 67.8 50 62.0
MELO3C019622.2 Cucumis melo HOM05D000198 ORTHO05D005702 5.5e-10 67.8 50 62.0
Glyma.08G163700 Glycine max HOM05D000198 ORTHO05D005702 5.5e-10 67.8 52 51.9
Lj3g0005942 Lotus japonicus HOM05D000198 ORTHO05D005702 7.1e-10 67.4 52 57.7
PSO384G4748 Papaver somniferum HOM05D000198 ORTHO05D005702 7.1e-10 67.4 50 60.0
PSO782G3257 Papaver somniferum HOM05D000198 ORTHO05D005702 7.1e-10 67.4 50 60.0
GSVIVG01036721001 Vitis vinifera HOM05D000198 ORTHO05D005702 7.1e-10 67.4 52 55.8
DCAR_004554 Daucus carota HOM05D000198 ORTHO05D005702 9.3e-10 67.0 52 55.8
Glyma.15G263500 Glycine max HOM05D000198 ORTHO05D005702 9.3e-10 67.0 52 53.8
Phvul.005G048150 Phaseolus vulgaris HOM05D000198 ORTHO05D005702 9.3e-10 67.0 52 53.8
Zm00001eb233300 Zea mays HOM05D000198 ORTHO05D005702 9.3e-10 67.0 52 57.7
Lalb_Chr25g0284351 Lupinus albus HOM05D000198 ORTHO05D005702 1.2e-09 66.6 52 57.7
Prupe.4G128100 Prunus persica HOM05D000198 ORTHO05D005702 1.2e-09 66.6 50 58.0
Solyc09g090700.1 Solanum lycopersicum HOM05D000198 ORTHO05D005702 1.2e-09 66.6 50 60.0
Sopen09g033640 Solanum pennellii HOM05D000198 ORTHO05D005702 1.2e-09 66.6 50 60.0
PGSC0003DMG400017144 Solanum tuberosum HOM05D000198 ORTHO05D005702 1.2e-09 66.6 50 60.0
HanXRQChr11g0335841 Helianthus annuus HOM05D000198 ORTHO05D005702 1.6e-09 66.2 50 58.0
HanXRQChr11g0335851 Helianthus annuus HOM05D000198 ORTHO05D005702 1.6e-09 66.2 50 58.0
Medtr2g067660 Medicago truncatula HOM05D000198 ORTHO05D005702 1.6e-09 66.2 52 55.8
TPR.G28436 Trifolium pratense HOM05D000198 ORTHO05D005702 1.6e-09 66.2 52 55.8
Cpa.g.sc32.93 Carica papaya HOM05D000198 ORTHO05D005702 2.1e-09 65.9 52 57.7
CARHR073100 Cardamine hirsuta HOM05D000198 ORTHO05D005702 2.7e-09 65.5 54 51.9
Ca_03179_v3 Cicer arietinum L. HOM05D000198 ORTHO05D005702 2.7e-09 65.5 52 55.8
Ciclev10004713m.g Citrus clementina HOM05D000198 ORTHO05D005702 2.7e-09 65.5 52 55.8
CsaV3_6G013440 Cucumis sativus L. HOM05D000198 ORTHO05D005702 2.7e-09 65.5 50 58.0
Nitab4.5_0000194g0150 Nicotiana tabacum HOM05D000198 ORTHO05D005702 2.7e-09 65.5 63 52.4
Nitab4.5_0013063g0020 Nicotiana tabacum HOM05D000198 ORTHO05D005702 2.7e-09 65.5 63 52.4
Peaxi162Scf00153g00189 Petunia axillaris HOM05D000198 ORTHO05D005702 2.7e-09 65.5 50 58.0
PGR031G3164 Punica granatum HOM05D000198 ORTHO05D005702 2.7e-09 65.5 50 58.0
Carub.0002s2630 Capsella rubella HOM05D000198 ORTHO05D005702 3.5e-09 65.1 53 50.9
Nn8g40255 Nelumbo nucifera HOM05D000198 ORTHO05D005702 3.5e-09 65.1 52 53.8
EL10Ac2g03290 Beta vulgaris HOM05D000198 ORTHO05D005702 4.6e-09 64.7 50 56.0
CAN.G524.27 Capsicum annuum HOM05D000198 ORTHO05D005702 4.6e-09 64.7 50 58.0
FvH4_3g14080 Fragaria vesca HOM05D000198 ORTHO05D005702 4.6e-09 64.7 50 56.0
FAN11G1157 Fragaria x ananassa HOM05D000198 ORTHO05D005702 4.6e-09 64.7 50 56.0
FAN16G0643 Fragaria x ananassa HOM05D000198 ORTHO05D005702 4.6e-09 64.7 50 56.0
FAN21G2180 Fragaria x ananassa HOM05D000198 ORTHO05D005702 4.6e-09 64.7 50 56.0
FAN25G1729 Fragaria x ananassa HOM05D000198 ORTHO05D005702 4.6e-09 64.7 50 56.0
Hund12032 Selenicereus undatus HOM05D000198 ORTHO05D005702 4.6e-09 64.7 52 55.8
THA.LOC104808138 Tarenaya hassleriana HOM05D000198 ORTHO05D005702 4.6e-09 64.7 52 51.9
CSS0002476 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 6.0e-09 64.3 52 55.8
CSS0048947 Camellia sinensis var. sinensis HOM05D000198 ORTHO05D005702 6.0e-09 64.3 52 55.8
Duzib268G0428 Durio zibethinus HOM05D000198 ORTHO05D005702 6.0e-09 64.3 51 54.9
Eucgr.F04474 Eucalyptus grandis HOM05D000198 ORTHO05D005702 6.0e-09 64.3 50 56.0
Peaxi162Scf00117g00003 Petunia axillaris HOM05D000198 ORTHO05D005702 6.0e-09 64.3 50 56.0
GSVIVG01036720001 Vitis vinifera HOM05D000198 ORTHO05D005702 6.0e-09 64.3 52 53.8
CiPaw.11G057000 Carya illinoinensis HOM05D000198 ORTHO05D005702 7.9e-09 63.9 50 58.0
MD05G1238300 Malus domestica HOM05D000198 ORTHO05D005702 7.9e-09 63.9 50 56.0
AL2G40050 Arabidopsis lyrata HOM05D000198 ORTHO05D005702 1.0e-08 63.5 52 51.9
AT1G79440 Arabidopsis thaliana HOM05D000198 ORTHO05D005702 1.0e-08 63.5 52 51.9
Psat1g015240 Pisum sativum HOM05D000198 ORTHO05D005702 1.0e-08 63.5 52 53.8
HanXRQChr13g0419821 Helianthus annuus HOM05D000198 ORTHO05D005702 1.3e-08 63.2 50 54.0
MD10G1216600 Malus domestica HOM05D000198 ORTHO05D005702 1.3e-08 63.2 50 54.0
Sc06g0002010 Simmondsia chinensis HOM05D000198 ORTHO05D005702 1.8e-08 62.8 50 56.0
HanXRQChr07g0190661 Helianthus annuus HOM05D000198 ORTHO05D005702 2.3e-08 62.4 52 51.9
HanXRQChr07g0190721 Helianthus annuus HOM05D000198 ORTHO05D005702 2.3e-08 62.4 50 54.0
BcaC08g47505 Brassica carinata HOM05D000198 ORTHO05D005702 3.0e-08 62.0 53 49.1
Sp5g34490 Schrenkiella parvula HOM05D000198 ORTHO05D005702 3.0e-08 62.0 53 49.1
Sed0009726 Sechium edule HOM05D000198 ORTHO05D005702 3.0e-08 62.0 50 54.0
CDE06G0595 Ceratophyllum demersum HOM05D000198 ORTHO05D005702 3.9e-08 61.6 49 55.1
Actinidia12753 Actinidia chinensis HOM05D000198 ORTHO05D005702 5.1e-08 61.2 52 51.9
Thecc.07G192200 Theobroma cacao HOM05D000198 ORTHO05D005702 5.1e-08 61.2 50 56.0
GSVIVG01036719001 Vitis vinifera HOM05D000198 ORTHO05D005702 5.1e-08 61.2 47 57.4
Potri.010G174000 Populus trichocarpa HOM05D000198 ORTHO05D005702 6.7e-08 60.8 52 53.8
Cfa019371 Carpinus fangiana HOM05D000198 ORTHO05D005702 8.7e-08 60.5 52 51.9
Haze_07763 Corylus avellana HOM05D000198 ORTHO05D005702 8.7e-08 60.5 52 51.9
RcHm_v2.0_Chr5g0023391 Rosa chinensis HOM05D000198 ORTHO05D005702 8.7e-08 60.5 50 52.0
CANSAT56G4341 Cannabis sativa HOM05D000198 ORTHO05D005702 1.5e-07 59.7 52 46.2
A07p44510 Brassica napus HOM05D000198 ORTHO05D005702 1.9e-07 59.3 52 48.1
C06p53340 Brassica napus HOM05D000198 ORTHO05D005702 1.9e-07 59.3 52 48.1
BraA07t31961Z Brassica rapa HOM05D000198 ORTHO05D005702 1.9e-07 59.3 52 48.1
QL04p094021 Quercus lobata HOM05D000198 ORTHO05D005702 2.5e-07 58.9 50 48.0
Aa31LG4G1580 Aethionema arabicum HOM05D000198 ORTHO05D005702 5.7e-07 57.8 53 43.4
Duzib213G0040 Durio zibethinus HOM05D000198 ORTHO05D005702 7.4e-07 57.4 49 53.1
Thhalv10018394m.g Eutrema salsugineum HOM05D000198 ORTHO05D005702 7.4e-07 57.4 53 49.1
Gohir.A01G100200 Gossypium hirsutum HOM05D000198 ORTHO05D005702 4.8e-06 54.7 49 53.1
Gohir.D01G084900 Gossypium hirsutum HOM05D000198 ORTHO05D005702 4.8e-06 54.7 49 53.1
Gorai.002G110500 Gossypium raimondii HOM05D000198 ORTHO05D005702 4.8e-06 54.7 49 53.1
SMO364G0446 Selaginella moellendorffii HOM05D000198 ORTHO05D005702 4.8e-06 54.7 52 48.1
ATR0697G108 Amborella trichopoda HOM05D000198 ORTHO05D005702 8.2e-06 53.9 52 42.3
SHI33378 Sapria himalayana HOM05D000198 ORTHO05D005702 8.2e-06 53.9 47 48.9


User provided reference genes

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