Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 1.7e-57 225.7 108 100.0
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.3e-17 93.2 47 91.5
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.1e-16 90.1 47 85.1
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 1.1e-16 90.1 47 87.2
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 1.9e-16 89.4 47 85.1
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.9e-16 89.4 47 87.2
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 1.9e-16 89.4 47 87.2
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.5e-16 89.0 91 49.5
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.5e-16 89.0 91 49.5
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 4.2e-16 88.2 47 85.1
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 5.5e-16 87.8 47 87.2
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 7.2e-16 87.4 91 48.4
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 7.2e-16 87.4 91 48.4
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 9.4e-16 87.0 47 85.1
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 9.4e-16 87.0 47 85.1
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 9.4e-16 87.0 47 85.1
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 9.4e-16 87.0 47 85.1
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 9.4e-16 87.0 47 83.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.2e-15 86.7 47 85.1
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 1.2e-15 86.7 47 80.9
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 1.2e-15 86.7 44 86.4
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.6e-15 86.3 47 85.1
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.6e-15 86.3 47 85.1
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.6e-15 86.3 47 80.9
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.6e-15 86.3 47 80.9
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.6e-15 86.3 47 80.9
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.6e-15 86.3 47 83.0
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.1e-15 85.9 47 80.9
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 2.1e-15 85.9 47 80.9
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.1e-15 85.9 47 80.9
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 2.1e-15 85.9 47 85.1
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 2.1e-15 85.9 47 83.0
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 2.1e-15 85.9 47 83.0
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 2.7e-15 85.5 47 80.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 2.7e-15 85.5 47 80.9
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 2.7e-15 85.5 47 80.9
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 3.6e-15 85.1 47 83.0
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 3.6e-15 85.1 47 80.9
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 3.6e-15 85.1 47 83.0
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 4.7e-15 84.7 47 83.0
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 4.7e-15 84.7 62 66.1
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 80.9
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 80.9
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 80.9
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 80.9
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 83.0
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 83.0
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 83.0
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 80.9
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 6.1e-15 84.3 47 80.9
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 6.1e-15 84.3 45 82.2
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 8.0e-15 84.0 47 83.0
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 8.0e-15 84.0 47 78.7
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 8.0e-15 84.0 47 83.0
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 8.0e-15 84.0 47 80.9
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 8.0e-15 84.0 47 80.9
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 8.0e-15 84.0 47 80.9
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-14 83.6 47 78.7
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-14 83.6 47 78.7
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-14 83.6 47 78.7
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.0e-14 83.6 62 64.5
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.4e-14 83.2 47 80.9
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 1.4e-14 83.2 46 84.8
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.4e-14 83.2 46 84.8
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.4e-14 83.2 89 49.4
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 1.8e-14 82.8 47 78.7
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.8e-14 82.8 47 78.7
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.8e-14 82.8 44 81.8
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 78.7
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 78.7
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 80.9
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 80.9
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 80.9
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 78.7
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 80.9
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 80.9
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 76.6
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 2.3e-14 82.4 47 78.7
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 3.0e-14 82.0 47 80.9
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 3.0e-14 82.0 47 74.5
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.0e-14 82.0 45 82.2
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 3.9e-14 81.6 47 80.9
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 3.9e-14 81.6 47 76.6
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 3.9e-14 81.6 47 78.7
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 3.9e-14 81.6 47 78.7
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.9e-14 81.6 47 78.7
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 5.2e-14 81.3 47 78.7
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 6.7e-14 80.9 47 78.7
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 6.7e-14 80.9 47 78.7
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 6.7e-14 80.9 47 78.7
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 6.7e-14 80.9 47 78.7
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 6.7e-14 80.9 47 78.7
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 8.8e-14 80.5 47 78.7
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 1.1e-13 80.1 47 76.6
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-13 80.1 47 76.6
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.1e-13 80.1 47 76.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.1e-13 80.1 47 76.6
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 1.5e-13 79.7 47 76.6
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 1.5e-13 79.7 47 76.6
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.5e-13 79.7 47 76.6
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.5e-13 79.7 44 79.5
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.5e-13 79.7 47 74.5
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.5e-13 79.7 47 78.7
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 2.0e-13 79.3 47 76.6
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 2.0e-13 79.3 47 76.6
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.0e-13 79.3 47 76.6
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 2.0e-13 79.3 47 76.6
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 2.6e-13 79.0 47 76.6
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.6e-13 79.0 47 72.3
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 3.3e-13 78.6 47 74.5
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 3.3e-13 78.6 47 72.3
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 4.4e-13 78.2 47 74.5
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 4.4e-13 78.2 47 74.5
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 5.7e-13 77.8 43 86.0
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 5.7e-13 77.8 47 74.5
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.7e-13 77.8 47 72.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.7e-13 77.8 47 72.3
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 7.4e-13 77.4 47 72.3
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 9.7e-13 77.0 47 74.5
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 1.3e-12 76.6 47 68.1
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 3.7e-12 75.1 50 68.0
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 3.7e-12 75.1 47 70.2
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 8.2e-12 73.9 50 66.0
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.1e-11 73.6 47 70.2
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 4.5e-10 68.2 39 71.8
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 5.9e-10 67.8 46 65.2
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.1e-08 63.5 38 78.9
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 1.1e-08 63.5 45 73.3
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.8e-06 56.2 32 75.0
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 6.7e-06 54.3 46 56.5
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 8.8e-06 53.9 46 56.5


User provided reference genes

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