Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold26G11263 Striga asiatica HOM05D003169 ORTHO05D003700 9.7e-83 310.1 154 100.0
SGA_v2.0_scaffold186G40168 Striga asiatica HOM05D003169 ORTHO05D003700 3.4e-43 178.7 114 81.6
Migut.M01496 Erythranthe guttata HOM05D003169 ORTHO05D003700 2.1e-40 169.5 114 76.3
MSTRG.7098 Avicennia marina HOM05D003169 ORTHO05D003700 3.5e-40 168.7 114 75.4
Rhsim06G0244800 Rhododendron simsii HOM05D003169 ORTHO05D003700 5.1e-39 164.9 129 65.1
CANSAT56G1976 Cannabis sativa HOM05D003169 ORTHO05D003700 8.6e-39 164.1 112 73.2
TWI38G0104 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.5e-38 162.5 113 72.6
TWI38G0597 Tripterygium wilfordii HOM05D003169 ORTHO05D003700 2.5e-38 162.5 113 72.6
Cc00_g09100 Coffea canephora HOM05D003169 ORTHO05D003700 5.6e-38 161.4 112 72.3
Lj2A8G61 Lonicera japonica HOM05D003169 ORTHO05D003700 7.3e-38 161.0 115 69.6
Actinidia26204 Actinidia chinensis HOM05D003169 ORTHO05D003700 9.5e-38 160.6 112 73.2
MELO3C019615.2 Cucumis melo HOM05D003169 ORTHO05D003700 9.5e-38 160.6 112 72.3
TAR627G0022 Trochodendron aralioides HOM05D003169 ORTHO05D003700 9.5e-38 160.6 112 73.2
GSVIVG01036703001 Vitis vinifera HOM05D003169 ORTHO05D003700 9.5e-38 160.6 111 73.0
Nitab4.5_0003291g0060 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.2e-37 160.2 124 66.9
Ciclev10006112m.g Citrus clementina HOM05D003169 ORTHO05D003700 1.6e-37 159.8 112 70.5
Haze_18485 Corylus avellana HOM05D003169 ORTHO05D003700 1.6e-37 159.8 112 71.4
Dinv42454 Davidia involucrata HOM05D003169 ORTHO05D003700 1.6e-37 159.8 112 72.3
Sed0006985 Sechium edule HOM05D003169 ORTHO05D003700 1.6e-37 159.8 112 72.3
CiPaw.15G111900 Carya illinoinensis HOM05D003169 ORTHO05D003700 2.8e-37 159.1 112 71.4
CsaV3_6G013370 Cucumis sativus L. HOM05D003169 ORTHO05D003700 2.8e-37 159.1 112 71.4
Potri.008G081200 Populus trichocarpa HOM05D003169 ORTHO05D003700 2.8e-37 159.1 112 71.4
CSS0011288 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 3.6e-37 158.7 112 72.3
Manes.16G048930 Manihot esculenta HOM05D003169 ORTHO05D003700 4.7e-37 158.3 112 68.8
Hma1.2p1_0754F.1_g213010 Hydrangea macrophylla HOM05D003169 ORTHO05D003700 6.2e-37 157.9 112 71.4
Nn7g38410 Nelumbo nucifera HOM05D003169 ORTHO05D003700 6.2e-37 157.9 112 69.6
Thecc.07G189500 Theobroma cacao HOM05D003169 ORTHO05D003700 8.1e-37 157.5 112 69.6
Atru.chr1.22 Acer truncatum HOM05D003169 ORTHO05D003700 1.8e-36 156.4 112 67.9
Potri.010G174900 Populus trichocarpa HOM05D003169 ORTHO05D003700 1.8e-36 156.4 112 70.5
RcHm_v2.0_Chr5g0023151 Rosa chinensis HOM05D003169 ORTHO05D003700 1.8e-36 156.4 112 68.8
FAN16G1231 Fragaria x ananassa HOM05D003169 ORTHO05D003700 2.3e-36 156.0 112 69.6
FAN21G1262 Fragaria x ananassa HOM05D003169 ORTHO05D003700 2.3e-36 156.0 112 69.6
QL04p010784 Quercus lobata HOM05D003169 ORTHO05D003700 2.3e-36 156.0 112 68.8
QL04p095761 Quercus lobata HOM05D003169 ORTHO05D003700 2.3e-36 156.0 112 68.8
Aqoxy1G01380 Aquilegia oxysepala HOM05D003169 ORTHO05D003700 3.1e-36 155.6 112 68.8
Duzib213G0284 Durio zibethinus HOM05D003169 ORTHO05D003700 3.1e-36 155.6 112 68.8
Lalb_Chr19g0133151 Lupinus albus HOM05D003169 ORTHO05D003700 3.1e-36 155.6 112 67.9
PGR031G0700 Punica granatum HOM05D003169 ORTHO05D003700 3.1e-36 155.6 112 69.6
FvH4_3g13920 Fragaria vesca HOM05D003169 ORTHO05D003700 4.0e-36 155.2 112 68.8
FAN25G3213 Fragaria x ananassa HOM05D003169 ORTHO05D003700 4.0e-36 155.2 112 69.6
Aa31LG4G1680 Aethionema arabicum HOM05D003169 ORTHO05D003700 5.2e-36 154.8 112 67.0
Glyma.08G233702 Glycine max HOM05D003169 ORTHO05D003700 5.2e-36 154.8 112 67.9
Glyma.15G219200 Glycine max HOM05D003169 ORTHO05D003700 5.2e-36 154.8 112 67.9
Phvul.011G180100 Phaseolus vulgaris HOM05D003169 ORTHO05D003700 5.2e-36 154.8 112 67.9
Sabra10G0134700 Salix brachista HOM05D003169 ORTHO05D003700 5.2e-36 154.8 112 69.6
arahy.Tifrunner.gnm1.ann1.0T77JN Arachis hypogaea HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 67.9
BcaB02g08679 Brassica carinata HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 67.0
BcaC08g47495 Brassica carinata HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 67.0
BolC6t40342H Brassica oleracea HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 67.0
Gohir.D13G130400 Gossypium hirsutum HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 67.9
Gorai.013G146500 Gossypium raimondii HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 67.9
Medtr8g447090 Medicago truncatula HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 67.9
Prupe.4G126100 Prunus persica HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 69.6
VMungo1127G0192 Vigna mungo HOM05D003169 ORTHO05D003700 6.8e-36 154.5 112 67.9
MBI18_g37376_MAGBIO Magnolia biondii HOM05D003169 ORTHO05D003700 8.9e-36 154.1 112 67.9
Sopen10g001470 Solanum pennellii HOM05D003169 ORTHO05D003700 8.9e-36 154.1 112 67.9
Oeu025995.1 Olea europaea HOM05D003169 ORTHO05D003700 1.2e-35 153.7 112 68.8
Psat4g185200 Pisum sativum HOM05D003169 ORTHO05D003700 1.2e-35 153.7 112 67.9
CAN.G492.81 Capsicum annuum HOM05D003169 ORTHO05D003700 1.5e-35 153.3 112 67.9
Eucgr.F04478 Eucalyptus grandis HOM05D003169 ORTHO05D003700 1.5e-35 153.3 112 67.0
Gohir.A13G126700 Gossypium hirsutum HOM05D003169 ORTHO05D003700 1.5e-35 153.3 112 67.9
MD05G1239900 Malus domestica HOM05D003169 ORTHO05D003700 1.5e-35 153.3 112 69.6
MD10G1218000 Malus domestica HOM05D003169 ORTHO05D003700 2.0e-35 152.9 112 69.6
THA.LOC104812392 Tarenaya hassleriana HOM05D003169 ORTHO05D003700 2.0e-35 152.9 112 67.9
AT1G79350 Arabidopsis thaliana HOM05D003169 ORTHO05D003700 2.6e-35 152.5 112 66.1
Carub.0002s2621 Capsella rubella HOM05D003169 ORTHO05D003700 2.6e-35 152.5 112 67.0
DCAR_016853 Daucus carota HOM05D003169 ORTHO05D003700 2.6e-35 152.5 125 60.0
Thhalv10018021m.g Eutrema salsugineum HOM05D003169 ORTHO05D003700 2.6e-35 152.5 112 66.1
Lj3g0024633 Lotus japonicus HOM05D003169 ORTHO05D003700 2.6e-35 152.5 112 66.1
TPR.G30141 Trifolium pratense HOM05D003169 ORTHO05D003700 3.4e-35 152.1 113 69.0
Oeu029455.1 Olea europaea HOM05D003169 ORTHO05D003700 4.4e-35 151.8 111 70.3
HanXRQChr03g0077801 Helianthus annuus HOM05D003169 ORTHO05D003700 5.8e-35 151.4 112 67.0
Sp5g34410 Schrenkiella parvula HOM05D003169 ORTHO05D003700 5.8e-35 151.4 112 66.1
Os04g0609700 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 7.6e-35 151.0 112 66.1
PSO675G7315 Papaver somniferum HOM05D003169 ORTHO05D003700 1.3e-34 150.2 112 67.0
A07p44430 Brassica napus HOM05D003169 ORTHO05D003700 1.7e-34 149.8 83 81.9
C06p53240 Brassica napus HOM05D003169 ORTHO05D003700 1.7e-34 149.8 83 81.9
CSS0003080 Camellia sinensis var. sinensis HOM05D003169 ORTHO05D003700 1.7e-34 149.8 112 67.0
ECA240G3251 Erigeron canadensis HOM05D003169 ORTHO05D003700 2.2e-34 149.4 112 66.1
vmacro22494 Vaccinium macrocarpon HOM05D003169 ORTHO05D003700 2.2e-34 149.4 81 86.4
VMungo1127G0538 Vigna mungo HOM05D003169 ORTHO05D003700 2.2e-34 149.4 82 84.1
EL10Ac2g03244 Beta vulgaris HOM05D003169 ORTHO05D003700 4.9e-34 148.3 112 64.3
PSO541G6458 Papaver somniferum HOM05D003169 ORTHO05D003700 4.9e-34 148.3 112 66.1
HPP92_005947 Vanilla planifolia HOM05D003169 ORTHO05D003700 6.4e-34 147.9 81 86.4
Rhsim06G0106300 Rhododendron simsii HOM05D003169 ORTHO05D003700 1.4e-33 146.7 83 81.9
Sc06g0001640 Simmondsia chinensis HOM05D003169 ORTHO05D003700 1.4e-33 146.7 112 66.1
arahy.Tifrunner.gnm1.ann1.4D9FZH Arachis hypogaea HOM05D003169 ORTHO05D003700 1.9e-33 146.4 81 84.0
Nitab4.5_0007774g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 1.9e-33 146.4 78 87.2
Rhsim02G0183500 Rhododendron simsii HOM05D003169 ORTHO05D003700 5.4e-33 144.8 83 81.9
TAR629G1197 Trochodendron aralioides HOM05D003169 ORTHO05D003700 7.1e-33 144.4 81 85.2
unitig_32.g11074 Utricularia gibba HOM05D003169 ORTHO05D003700 1.2e-32 143.7 84 79.8
BraA07t31952Z Brassica rapa HOM05D003169 ORTHO05D003700 6.0e-32 141.4 136 55.1
AUR62043014 Chenopodium quinoa HOM05D003169 ORTHO05D003700 7.8e-32 141.0 83 79.5
ATR0794G028 Amborella trichopoda HOM05D003169 ORTHO05D003700 1.0e-31 140.6 84 76.2
arahy.Tifrunner.gnm1.ann1.THX68V Arachis hypogaea HOM05D003169 ORTHO05D003700 2.3e-31 139.4 83 77.1
Zm00001eb430630 Zea mays HOM05D003169 ORTHO05D003700 2.3e-31 139.4 83 79.5
Lsat_1_v5_gn_7_69060 Lactuca sativa HOM05D003169 ORTHO05D003700 3.9e-31 138.7 78 78.2
Zm00001eb413950 Zea mays HOM05D003169 ORTHO05D003700 3.9e-31 138.7 112 58.9
Ah.16g106160 Amaranthus hybridus HOM05D003169 ORTHO05D003700 5.1e-31 138.3 112 61.6
Peaxi162Scf00166g00077 Petunia axillaris HOM05D003169 ORTHO05D003700 5.1e-31 138.3 112 59.8
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 6.6e-31 137.9 108 63.0
HanXRQChr13g0408911 Helianthus annuus HOM05D003169 ORTHO05D003700 6.6e-31 137.9 85 71.8
HanXRQChr13g0408941 Helianthus annuus HOM05D003169 ORTHO05D003700 6.6e-31 137.9 85 71.8
Lalb_Chr20g0108381 Lupinus albus HOM05D003169 ORTHO05D003700 8.6e-31 137.5 83 75.9
Pp3c3_5410 Physcomitrium patens HOM05D003169 ORTHO05D003700 1.1e-30 137.1 88 70.5
TPR.G3619 Trifolium pratense HOM05D003169 ORTHO05D003700 1.5e-30 136.7 83 73.5
Peaxi162Scf00420g00518 Petunia axillaris HOM05D003169 ORTHO05D003700 1.9e-30 136.3 112 58.9
DCAR_013706 Daucus carota HOM05D003169 ORTHO05D003700 2.5e-30 136.0 83 74.7
Mapoly0153s0011 Marchantia polymorpha HOM05D003169 ORTHO05D003700 2.5e-30 136.0 84 72.6
Medtr2g063620 Medicago truncatula HOM05D003169 ORTHO05D003700 3.3e-30 135.6 82 72.0
Psat0s11g0040 Pisum sativum HOM05D003169 ORTHO05D003700 3.3e-30 135.6 98 66.3
arahy.Tifrunner.gnm1.ann1.JSN7JY Arachis hypogaea HOM05D003169 ORTHO05D003700 3.6e-29 132.1 83 74.7
Lj3g0007581 Lotus japonicus HOM05D003169 ORTHO05D003700 8.1e-29 131.0 84 73.8
Hund20128 Selenicereus undatus HOM05D003169 ORTHO05D003700 2.4e-28 129.4 87 66.7
DCAR_013705 Daucus carota HOM05D003169 ORTHO05D003700 2.2e-26 122.9 83 66.3
AagrBONN_evm.TU.Sc2ySwM_228.2486 Anthoceros agrestis HOM05D003169 ORTHO05D003700 4.9e-26 121.7 87 63.2
COL.COLO4_25001 Corchorus olitorius HOM05D003169 ORTHO05D003700 4.9e-26 121.7 139 52.5
Peaxi162Scf00670g00216 Petunia axillaris HOM05D003169 ORTHO05D003700 4.9e-26 121.7 68 79.4
CBR_g11926 Chara braunii HOM05D003169 ORTHO05D000002 4.2e-25 118.6 83 60.2
ClCG02G018810 Citrullus lanatus HOM05D003169 ORTHO05D003700 2.1e-24 116.3 93 67.7
TPR.G3624 Trifolium pratense HOM05D003169 ORTHO05D003700 2.1e-24 116.3 85 62.4
Medtr2g063813 Medicago truncatula HOM05D003169 ORTHO05D003700 3.0e-23 112.5 103 54.4
Medtr6g091960 Medicago truncatula HOM05D003169 ORTHO05D003700 3.9e-23 112.1 84 61.9
BcaC03g15885 Brassica carinata HOM05D014255 ORTHO05D015450 1.8e-20 103.2 78 65.4
FAN11G1789 Fragaria x ananassa HOM05D003169 ORTHO05D003700 9.0e-20 100.9 54 79.6
Dinv19571 Davidia involucrata HOM05D003169 ORTHO05D003700 8.4e-18 94.4 59 74.6
BolC2t09653H Brassica oleracea HOM05D003169 ORTHO05D015450 1.9e-17 93.2 97 53.6
C02p36530 Brassica napus HOM05D003169 ORTHO05D015450 2.4e-17 92.8 67 70.1
Actinidia33339 Actinidia chinensis HOM05D003169 ORTHO05D003700 5.4e-17 91.7 44 88.6
Nitab4.5_0009958g0020 Nicotiana tabacum HOM05D003169 ORTHO05D003700 2.7e-16 89.4 44 84.1
Os08g0223833 Oryza sativa ssp. japonica HOM05D003169 ORTHO05D003700 7.1e-09 64.7 79 48.1
BcaB02g10945 Brassica carinata HOM05D000798 ORTHO05D003700 3.5e-08 62.4 67 50.7
BcaB02g10953 Brassica carinata HOM05D000798 ORTHO05D003700 3.5e-08 62.4 67 50.7
Cre13.g578501 Chlamydomonas reinhardtii HOM05D003169 ORTHO05D003700 1.1e-06 57.4 60 41.7


User provided reference genes

Program Settings