Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 1.3e-266 923.3 855 100.0
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 4.2e-127 459.9 444 83.1
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 7.2e-119 432.6 449 79.1
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 2.5e-103 380.9 441 74.6
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 4.2e-103 380.2 449 72.6
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 5.7e-100 369.8 442 74.7
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 1.8e-98 364.8 441 71.7
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 2.4e-98 364.4 432 72.7
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.2e-97 362.1 441 69.8
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 3.5e-97 360.5 443 70.9
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 5.9e-97 359.8 447 71.1
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 1.7e-96 358.2 442 71.5
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 6.6e-96 356.3 455 69.9
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 6.6e-96 356.3 455 69.9
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 3.3e-95 354.0 457 68.3
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 3.6e-94 350.5 453 68.4
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 1.8e-93 348.2 456 70.4
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 3.1e-93 347.4 460 68.9
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 3.1e-93 347.4 435 70.8
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 4.0e-93 347.1 443 68.2
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 6.8e-93 346.3 447 69.8
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 1.5e-92 345.1 445 70.1
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 5.8e-92 343.2 440 70.0
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 1.3e-91 342.0 450 68.0
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 1.3e-91 342.0 447 68.5
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 2.2e-91 341.3 411 75.4
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 2.2e-91 341.3 428 72.4
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 2.9e-91 340.9 438 68.9
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 6.4e-91 339.7 443 68.8
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 6.4e-91 339.7 449 68.6
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 8.3e-91 339.3 443 69.5
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 1.4e-90 338.6 467 66.6
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 2.4e-90 337.8 442 68.1
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 5.4e-90 336.7 443 69.1
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 7.0e-90 336.3 444 70.9
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 9.2e-90 335.9 441 67.3
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 1.6e-89 335.1 467 66.0
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 1.6e-89 335.1 439 68.8
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.0e-88 332.4 406 74.6
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 1.7e-88 331.6 406 74.6
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 1.7e-88 331.6 443 67.9
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 3.0e-88 330.9 441 67.8
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 3.9e-88 330.5 456 65.8
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 3.9e-88 330.5 439 67.7
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 3.9e-88 330.5 453 66.9
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 6.6e-88 329.7 439 67.7
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 8.6e-88 329.3 444 70.0
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 1.1e-87 328.9 436 67.2
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 1.9e-87 328.2 444 68.7
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 1.9e-87 328.2 439 67.4
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 1.9e-87 328.2 444 67.1
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 2.5e-87 327.8 447 68.2
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 3.3e-87 327.4 456 65.6
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 3.3e-87 327.4 456 65.6
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 9.5e-87 325.9 448 66.1
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 1.6e-86 325.1 439 67.4
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 2.1e-86 324.7 408 73.5
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 3.6e-86 323.9 463 65.2
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 1.5e-84 318.5 452 64.6
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 7.5e-84 316.2 437 66.4
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 7.5e-84 316.2 441 66.9
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 4.9e-83 313.5 444 65.3
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 4.6e-81 307.0 443 67.0
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 7.8e-81 306.2 449 63.9
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 1.0e-80 305.8 439 67.0
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 1.3e-80 305.4 415 68.9
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 3.9e-80 303.9 525 50.3
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 5.1e-80 303.5 457 63.7
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 8.6e-80 302.8 416 69.5
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 1.1e-79 302.4 421 68.9
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 2.8e-78 297.7 439 64.9
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 8.1e-78 296.2 435 63.7
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 1.4e-77 295.4 396 69.9
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 1.4e-77 295.4 449 63.5
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 1.5e-76 292.0 439 63.8
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 1.5e-76 292.0 413 69.2
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 7.6e-76 289.7 404 58.9
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 1.3e-75 288.9 413 67.8
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 8.4e-75 286.2 402 68.4
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 1.4e-74 285.4 402 68.4
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 7.8e-73 279.6 437 63.4
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 7.8e-73 279.6 409 47.2
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 1.1e-71 275.8 396 69.4
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 4.0e-69 267.3 443 61.9
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 1.9e-66 258.5 391 61.9
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 5.4e-66 256.9 453 45.0
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 1.1e-58 232.6 193 63.2
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 7.4e-55 219.9 222 52.3
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 6.9e-53 213.4 235 51.5
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 2.2e-43 181.8 369 63.7
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 1.3e-40 172.6 106 75.5
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 3.1e-37 161.4 106 67.0
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 6.9e-37 160.2 267 78.7
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 2.6e-36 158.3 99 71.7
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 2.2e-35 155.2 106 70.8
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 2.9e-35 154.8 106 66.0
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 4.2e-34 151.0 143 54.5
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 3.5e-33 147.9 105 64.8
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 1.8e-32 145.6 70 95.7
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 9.7e-31 139.8 421 52.7
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 5.3e-29 134.0 222 39.6
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 2.9e-27 128.3 72 83.3
unitig_27.g25077 Utricularia gibba HOM05D006896 ORTHO05D007622 3.9e-24 117.9 140 49.3
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.5e-23 115.9 71 70.4
Sopen06g034890 Solanum pennellii HOM05D006896 ORTHO05D007622 2.4e-21 108.6 143 44.8
Cc02_g30070 Coffea canephora HOM05D006896 ORTHO05D007622 4.1e-21 107.8 124 44.4
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 4.1e-21 107.8 68 69.1
Solyc06g083505.1 Solanum lycopersicum HOM05D006896 ORTHO05D007622 1.0e-19 103.2 128 46.1
Migut.I00962 Erythranthe guttata HOM05D006896 ORTHO05D007622 2.2e-19 102.1 118 42.4
Nitab4.5_0002546g0010 Nicotiana tabacum HOM05D006896 ORTHO05D007622 5.0e-19 100.9 148 40.5
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 6.5e-19 100.5 400 51.2
Nitab4.5_0001057g0240 Nicotiana tabacum HOM05D006896 ORTHO05D007622 2.5e-18 98.6 148 39.9
Peaxi162Scf00152g00734 Petunia axillaris HOM05D006896 ORTHO05D007622 2.5e-18 98.6 141 39.0
Cc04_g02450 Coffea canephora HOM05D006896 ORTHO05D007622 3.2e-18 98.2 144 40.3
PGSC0003DMG400024908 Solanum tuberosum HOM05D006896 ORTHO05D007622 1.8e-16 92.4 124 37.9
PGSC0003DMG401020091 Solanum tuberosum HOM05D006896 ORTHO05D007622 1.8e-16 92.4 144 41.0
SalBow1G2551 Salvia bowleyana HOM05D006896 ORTHO05D007622 2.0e-15 89.0 114 38.6
CAN.G855.24 Capsicum annuum HOM05D006896 ORTHO05D007622 4.4e-15 87.8 121 38.0
DCAR_021683 Daucus carota HOM05D006896 ORTHO05D007622 2.2e-14 85.5 211 33.2
Actinidia05615 Actinidia chinensis HOM05D006896 ORTHO05D007622 3.7e-14 84.7 129 39.5
TAR636G1166 Trochodendron aralioides HOM05D006896 ORTHO05D007622 3.7e-14 84.7 144 38.9
DCAR_023372 Daucus carota HOM05D001895 ORTHO05D002082 9.1e-13 80.1 146 36.3
Aqoxy3G03866 Aquilegia oxysepala HOM05D006896 ORTHO05D007622 1.2e-12 79.7 121 34.7
Nn1g00183 Nelumbo nucifera HOM05D006896 ORTHO05D007622 2.6e-12 78.6 155 38.7
Manes.04G135200 Manihot esculenta HOM05D006896 ORTHO05D007622 1.7e-11 75.9 125 36.8
Ciclev10026494m.g Citrus clementina HOM05D006896 ORTHO05D007622 5.0e-11 74.3 125 36.0
Zm00001eb122950 Zea mays HOM05D006896 ORTHO05D007622 8.5e-11 73.6 135 31.1
PGR102G1058 Punica granatum HOM05D006896 ORTHO05D007622 1.9e-10 72.4 142 35.2
MD15G1357300 Malus domestica HOM05D006896 ORTHO05D007622 3.2e-10 71.6 158 32.3
CANSAT21G0002 Cannabis sativa HOM05D006896 ORTHO05D007622 7.2e-10 70.5 155 34.8
Eucgr.F03083 Eucalyptus grandis HOM05D006896 ORTHO05D007622 7.2e-10 70.5 161 32.9
Os07g0611600 Oryza sativa ssp. japonica HOM05D006896 ORTHO05D007622 7.2e-10 70.5 146 35.6
CiPaw.04G076100 Carya illinoinensis HOM05D006896 ORTHO05D007622 2.1e-09 68.9 154 34.4
Cpa.g.sc25.137 Carica papaya HOM05D006896 ORTHO05D007622 2.7e-09 68.6 126 33.3
Thecc.01G002700 Theobroma cacao HOM05D006896 ORTHO05D007622 2.7e-09 68.6 157 34.4
THA.LOC104825918 Tarenaya hassleriana HOM05D006896 ORTHO05D007622 4.7e-09 67.8 125 39.2
Haze_24358 Corylus avellana HOM05D006896 ORTHO05D007622 6.1e-09 67.4 163 36.8
ECA240G1433 Erigeron canadensis HOM05D006896 ORTHO05D007622 3.0e-08 65.1 136 33.1
ECA233G6105 Erigeron canadensis HOM05D006896 ORTHO05D007622 2.6e-07 62.0 136 31.6
Cfa015335 Carpinus fangiana HOM05D006896 ORTHO05D007622 3.3e-07 61.6 145 32.4
PSO210G5688 Papaver somniferum HOM05D006896 ORTHO05D007622 7.5e-07 60.5 116 39.7
RhsimUnG0044500 Rhododendron simsii HOM05D006896 ORTHO05D007622 2.8e-06 58.5 99 35.4
HanXRQChr04g0122251 Helianthus annuus HOM05D006896 ORTHO05D007622 3.7e-06 58.2 128 34.4
EL10Ac4g10160 Beta vulgaris HOM05D006896 ORTHO05D007622 4.8e-06 57.8 119 33.6
EL10Ac4g10155 Beta vulgaris HOM05D006896 ORTHO05D007622 6.3e-06 57.4 119 33.6
Hund07447 Selenicereus undatus HOM05D006896 ORTHO05D007622 8.2e-06 57.0 127 30.7


User provided reference genes

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