Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold262G45936 Striga asiatica HOM05D001707 ORTHO05D001694 2.0e-79 299.3 183 100.0
SGA_v2.0_scaffold37G14636 Striga asiatica HOM05D001707 ORTHO05D001694 1.6e-15 87.0 177 53.7
MSTRG.9335 Avicennia marina HOM05D001707 ORTHO05D001694 1.8e-11 73.6 86 51.2
Migut.D01279 Erythranthe guttata HOM05D001707 ORTHO05D001694 1.8e-11 73.6 82 52.4
MSTRG.4611 Avicennia marina HOM05D001707 ORTHO05D001694 4.1e-11 72.4 82 54.9
unitig_61.g26372 Utricularia gibba HOM05D001707 ORTHO05D001694 2.6e-10 69.7 94 50.0
Carub.0005s1485 Capsella rubella HOM05D001707 ORTHO05D001694 5.9e-10 68.6 82 51.2
Duzib068G0449 Durio zibethinus HOM05D001707 ORTHO05D001694 5.9e-10 68.6 98 45.9
SalBow1G7252 Salvia bowleyana HOM05D001707 ORTHO05D001694 5.9e-10 68.6 111 43.2
Gohir.A07G048900 Gossypium hirsutum HOM05D001707 ORTHO05D001694 7.7e-10 68.2 82 48.8
Gohir.D07G053100 Gossypium hirsutum HOM05D001707 ORTHO05D001694 7.7e-10 68.2 82 48.8
Gorai.001G056200 Gossypium raimondii HOM05D001707 ORTHO05D001694 7.7e-10 68.2 82 48.8
Gohir.D12G193400 Gossypium hirsutum HOM05D001707 ORTHO05D001694 1.0e-09 67.8 96 45.8
Gorai.008G208200 Gossypium raimondii HOM05D001707 ORTHO05D001694 1.0e-09 67.8 96 45.8
Eucgr.K02701 Eucalyptus grandis HOM05D001707 ORTHO05D001694 1.7e-09 67.0 93 43.0
Gohir.A12G191300 Gossypium hirsutum HOM05D001707 ORTHO05D001694 1.7e-09 67.0 96 45.8
CANSAT80G2115 Cannabis sativa HOM05D001707 ORTHO05D001694 2.2e-09 66.6 78 48.7
SalBow5G1728 Salvia bowleyana HOM05D001707 ORTHO05D001694 2.2e-09 66.6 162 47.5
TWI39G0486 Tripterygium wilfordii HOM05D001707 ORTHO05D001694 3.8e-09 65.9 87 46.0
RcHm_v2.0_Chr7g0189521 Rosa chinensis HOM05D001707 ORTHO05D001694 5.0e-09 65.5 91 51.6
Aa31LG1G18390 Aethionema arabicum HOM05D001707 ORTHO05D001694 6.5e-09 65.1 77 49.4
TPR.G35259 Trifolium pratense HOM05D001707 ORTHO05D001694 8.5e-09 64.7 91 47.3
Duzib084G0782 Durio zibethinus HOM05D001707 ORTHO05D001694 1.1e-08 64.3 81 46.9
FAN08G0856 Fragaria x ananassa HOM05D001707 ORTHO05D001694 1.1e-08 64.3 82 52.4
THA.LOC104798937 Tarenaya hassleriana HOM05D001707 ORTHO05D001694 1.1e-08 64.3 91 47.3
arahy.Tifrunner.gnm1.ann1.A0BSJM Arachis hypogaea HOM05D001707 ORTHO05D001694 2.5e-08 63.2 91 46.2
Manes.14G048600 Manihot esculenta HOM05D001707 ORTHO05D001694 2.5e-08 63.2 76 50.0
FAN04G1505 Fragaria x ananassa HOM05D001707 ORTHO05D001694 3.2e-08 62.8 109 45.9
Thecc.03G134300 Theobroma cacao HOM05D001707 ORTHO05D001694 3.2e-08 62.8 75 49.3
Atru.chr6.1858 Acer truncatum HOM05D001707 ORTHO05D001694 4.2e-08 62.4 111 41.4
Cfa018762 Carpinus fangiana HOM05D001707 ORTHO05D001694 4.2e-08 62.4 80 47.5
FAN13G1532 Fragaria x ananassa HOM05D001707 ORTHO05D001694 4.2e-08 62.4 104 46.2
VMungo1309G2677 Vigna mungo HOM05D001707 ORTHO05D001694 4.2e-08 62.4 84 46.4
AT3G48710 Arabidopsis thaliana HOM05D001707 ORTHO05D001694 5.5e-08 62.0 80 51.2
Duzib205G0120 Durio zibethinus HOM05D001707 ORTHO05D001694 5.5e-08 62.0 81 45.7
Lj1g0012650 Lotus japonicus HOM05D001707 ORTHO05D001694 5.5e-08 62.0 100 42.0
Aa31LG4G17260 Aethionema arabicum HOM05D001707 ORTHO05D001694 7.2e-08 61.6 73 52.1
AL5G28130 Arabidopsis lyrata HOM05D001707 ORTHO05D001694 7.2e-08 61.6 82 46.3
BcaB04g19925 Brassica carinata HOM05D001707 ORTHO05D001694 7.2e-08 61.6 79 48.1
Lalb_Chr11g0069391 Lupinus albus HOM05D001707 ORTHO05D001694 7.2e-08 61.6 94 41.5
Manes.06G122400 Manihot esculenta HOM05D001707 ORTHO05D001694 7.2e-08 61.6 76 50.0
BcaC01g02357 Brassica carinata HOM05D001707 ORTHO05D001694 9.4e-08 61.2 85 47.1
C03p66170 Brassica napus HOM05D001707 ORTHO05D001694 9.4e-08 61.2 85 47.1
BolC3t18889H Brassica oleracea HOM05D001707 ORTHO05D001694 9.4e-08 61.2 85 47.1
CARHR157460 Cardamine hirsuta HOM05D001707 ORTHO05D001694 9.4e-08 61.2 82 47.6
Ciclev10031009m.g Citrus clementina HOM05D001707 ORTHO05D001694 9.4e-08 61.2 105 41.9
Haze_07179 Corylus avellana HOM05D001707 ORTHO05D001694 9.4e-08 61.2 80 46.2
BcaC04g23338 Brassica carinata HOM05D001707 ORTHO05D001694 1.2e-07 60.8 79 48.1
A09p08340 Brassica napus HOM05D001707 ORTHO05D001694 1.2e-07 60.8 77 49.4
C09p09410 Brassica napus HOM05D001707 ORTHO05D001694 1.2e-07 60.8 79 48.1
BolC9t53853H Brassica oleracea HOM05D001707 ORTHO05D001694 1.2e-07 60.8 73 50.7
BraA09t36483Z Brassica rapa HOM05D001707 ORTHO05D001694 1.2e-07 60.8 77 49.4
Prupe.5G147400 Prunus persica HOM05D001707 ORTHO05D001694 1.2e-07 60.8 77 49.4
FvH4_5g08751 Fragaria vesca HOM05D001707 ORTHO05D001694 1.6e-07 60.5 73 53.4
FAN18G3101 Fragaria x ananassa HOM05D001707 ORTHO05D001694 1.6e-07 60.5 73 53.4
Nitab4.5_0000645g0010 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.6e-07 60.5 99 41.4
Actinidia25554 Actinidia chinensis HOM05D001707 ORTHO05D001694 2.1e-07 60.1 76 50.0
Carub.0008s2428 Capsella rubella HOM05D001707 ORTHO05D001694 2.7e-07 59.7 77 48.1
Potri.015G100700 Populus trichocarpa HOM05D001707 ORTHO05D001694 2.7e-07 59.7 76 47.4
QL10p002064 Quercus lobata HOM05D001707 ORTHO05D001694 3.6e-07 59.3 77 50.6
QL10p002094 Quercus lobata HOM05D001707 ORTHO05D001694 3.6e-07 59.3 77 50.6
Sp2g26640 Schrenkiella parvula HOM05D001707 ORTHO05D001694 3.6e-07 59.3 70 48.6
Sc22g0003660 Simmondsia chinensis HOM05D001707 ORTHO05D001694 3.6e-07 59.3 87 50.6
Ah.02g114780 Amaranthus hybridus HOM05D001707 ORTHO05D001694 4.6e-07 58.9 82 48.8
AT5G63550 Arabidopsis thaliana HOM05D001707 ORTHO05D001694 4.6e-07 58.9 70 50.0
A06p27830 Brassica napus HOM05D001707 ORTHO05D001694 4.6e-07 58.9 92 46.7
BcaC01g02609 Brassica carinata HOM05D001707 ORTHO05D001694 6.1e-07 58.5 69 50.7
C03p62900 Brassica napus HOM05D001707 ORTHO05D001694 6.1e-07 58.5 69 50.7
BolC3t18544H Brassica oleracea HOM05D001707 ORTHO05D001694 6.1e-07 58.5 69 50.7
Sabra15G0121100 Salix brachista HOM05D001707 ORTHO05D001694 6.1e-07 58.5 71 50.7
Sp5g13310 Schrenkiella parvula HOM05D001707 ORTHO05D001694 6.1e-07 58.5 111 38.7
Sed0005357 Sechium edule HOM05D001707 ORTHO05D001694 6.1e-07 58.5 106 43.4
THA.LOC104821525 Tarenaya hassleriana HOM05D001707 ORTHO05D001694 6.1e-07 58.5 75 50.7
BcaB02g09752 Brassica carinata HOM05D001707 ORTHO05D001694 7.9e-07 58.2 114 39.5
MD14G1152400 Malus domestica HOM05D001707 ORTHO05D001694 7.9e-07 58.2 77 46.8
Hund02460 Selenicereus undatus HOM05D001707 ORTHO05D001694 7.9e-07 58.2 82 48.8
EL10Ac5g11375 Beta vulgaris HOM05D001707 ORTHO05D001694 1.0e-06 57.8 79 49.4
Nitab4.5_0004670g0030 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.0e-06 57.8 70 52.9
Peaxi162Scf00516g00221 Petunia axillaris HOM05D001707 ORTHO05D001694 1.0e-06 57.8 90 42.2
Psat5g052560 Pisum sativum HOM05D001707 ORTHO05D001694 1.0e-06 57.8 95 43.2
BcaB02g10625 Brassica carinata HOM05D001707 ORTHO05D001694 1.4e-06 57.4 80 48.8
A02p42870 Brassica napus HOM05D001707 ORTHO05D001694 1.4e-06 57.4 84 44.0
BraA06t25723Z Brassica rapa HOM05D001707 ORTHO05D001694 1.4e-06 57.4 76 50.0
Glyma.05G203100 Glycine max HOM05D001707 ORTHO05D001694 1.4e-06 57.4 77 46.8
Nitab4.5_0001257g0040 Nicotiana tabacum HOM05D001707 ORTHO05D001694 1.4e-06 57.4 102 40.2
GSVIVG01008586001 Vitis vinifera HOM05D001707 ORTHO05D000211 1.4e-06 57.4 78 48.7
CsaV3_1G000380 Cucumis sativus L. HOM05D001707 ORTHO05D001694 2.3e-06 56.6 110 39.1
Glyma.04G197900 Glycine max HOM05D001707 ORTHO05D001694 2.3e-06 56.6 73 47.9
Glyma.06G167700 Glycine max HOM05D001707 ORTHO05D001694 2.3e-06 56.6 73 47.9
CAN.G732.10 Capsicum annuum HOM05D001707 ORTHO05D001694 3.0e-06 56.2 69 49.3
MD06G1137600 Malus domestica HOM05D001707 ORTHO05D001694 3.0e-06 56.2 77 46.8
Potri.012G102500 Populus trichocarpa HOM05D001707 ORTHO05D001694 3.0e-06 56.2 78 44.9
Solyc03g097490.4 Solanum lycopersicum HOM05D001707 ORTHO05D001694 3.0e-06 56.2 70 50.0
Aa31LG3G11600 Aethionema arabicum HOM05D001707 ORTHO05D001694 3.9e-06 55.8 100 40.0
A06p30170 Brassica napus HOM05D001707 ORTHO05D001694 3.9e-06 55.8 101 39.6
Thhalv10010131m.g Eutrema salsugineum HOM05D001707 ORTHO05D000211 3.9e-06 55.8 105 40.0
Ah.11g046370 Amaranthus hybridus HOM05D001707 ORTHO05D001694 5.1e-06 55.5 69 49.3
Dinv11196 Davidia involucrata HOM05D001707 ORTHO05D001694 5.1e-06 55.5 77 46.8
Sopen06g029020 Solanum pennellii HOM05D001707 ORTHO05D001694 5.1e-06 55.5 79 46.8
BraA06t25968Z Brassica rapa HOM05D001707 ORTHO05D001694 6.7e-06 55.1 101 39.6
Peaxi162Scf01064g00233 Petunia axillaris HOM05D001707 ORTHO05D001694 6.7e-06 55.1 75 49.3
Psat5g168800 Pisum sativum HOM05D001707 ORTHO05D001694 6.7e-06 55.1 100 40.0
Sopen03g028250 Solanum pennellii HOM05D001707 ORTHO05D001694 6.7e-06 55.1 93 46.2
TAR622G1215 Trochodendron aralioides HOM05D001707 ORTHO05D001694 6.7e-06 55.1 69 49.3
PSO017G0112 Papaver somniferum HOM05D001707 ORTHO05D001694 8.8e-06 54.7 72 47.2
PSO478G2105 Papaver somniferum HOM05D001707 ORTHO05D001694 8.8e-06 54.7 72 47.2
Solyc06g072660.4 Solanum lycopersicum HOM05D001707 ORTHO05D001694 8.8e-06 54.7 76 51.3


User provided reference genes

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