Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.8e-263 912.1 485 100.0
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 1.4e-228 796.2 485 87.6
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 8.6e-210 733.8 492 77.4
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 5.0e-202 708.0 486 77.4
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 6.2e-200 701.0 488 74.8
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.9e-197 691.4 473 77.2
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.2e-195 686.8 487 74.9
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.8e-192 675.6 532 68.2
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 8.1e-192 674.1 493 73.0
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.8e-191 672.9 485 72.6
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 1.3e-189 666.8 485 73.2
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.4e-188 663.3 488 72.5
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 4.1e-188 661.8 485 75.9
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 5.4e-188 661.4 486 72.8
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 1.6e-187 659.8 486 72.0
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 4.6e-187 658.3 491 70.9
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.0e-186 657.1 486 72.0
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 8.6e-186 654.1 489 69.7
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 1.1e-185 653.7 492 69.9
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.5e-185 653.3 491 70.7
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 7.3e-185 651.0 492 68.9
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 9.6e-185 650.6 493 69.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 6.2e-184 647.9 489 70.6
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 8.1e-184 647.5 489 70.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 2.4e-183 646.0 486 70.8
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.4e-183 646.0 499 69.1
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.0e-183 645.2 500 70.2
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 6.9e-183 644.4 487 69.8
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.4e-182 641.7 493 67.1
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 5.8e-182 641.3 503 67.6
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 9.9e-182 640.6 489 68.3
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 9.9e-182 640.6 489 68.3
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 9.9e-182 640.6 487 69.6
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.9e-181 639.0 487 68.6
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 3.8e-181 638.6 488 68.9
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 8.4e-181 637.5 485 69.5
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 8.4e-181 637.5 526 66.5
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 2.4e-180 636.0 486 69.3
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 5.4e-180 634.8 485 69.1
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 7.1e-180 634.4 488 70.3
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 9.3e-180 634.0 490 68.2
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 9.3e-180 634.0 491 68.4
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.1e-179 632.9 487 69.4
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 3.5e-179 632.1 485 68.2
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 3.9e-178 628.6 493 69.0
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.1e-177 627.1 492 70.3
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 2.5e-177 625.9 485 69.9
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 3.3e-177 625.5 485 68.7
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 3.3e-177 625.5 487 68.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 4.3e-177 625.2 485 70.5
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 4.3e-177 625.2 485 69.7
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 7.3e-177 624.4 487 68.2
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 9.6e-177 624.0 485 69.5
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 9.6e-177 624.0 485 68.7
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.1e-176 622.9 467 70.4
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 6.2e-176 621.3 495 67.5
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 8.1e-176 620.9 486 67.3
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 8.1e-176 620.9 485 66.0
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.4e-175 620.2 508 69.3
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 1.8e-175 619.8 497 67.2
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-175 619.4 477 66.9
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 3.1e-175 619.0 488 68.0
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.0e-175 618.6 485 66.0
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.2e-174 617.1 485 68.0
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.2e-174 617.1 488 71.1
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 2.0e-174 616.3 488 67.8
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 2.6e-174 615.9 485 68.9
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 7.6e-174 614.4 405 76.8
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 2.2e-173 612.8 485 70.5
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 3.8e-173 612.1 485 67.4
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 4.9e-173 611.7 486 68.7
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.9e-172 609.8 491 66.2
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 2.4e-172 609.4 485 66.4
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.4e-172 609.4 498 64.9
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 3.2e-172 609.0 483 66.0
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 3.2e-172 609.0 483 66.0
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 4.2e-172 608.6 488 68.4
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 5.4e-172 608.2 486 66.5
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 1.6e-171 606.7 486 65.8
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 2.7e-171 605.9 496 66.3
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 7.9e-171 604.4 496 66.1
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.8e-170 603.2 485 68.5
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.9e-169 599.7 504 67.7
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 5.6e-169 598.2 485 65.6
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 7.4e-169 597.8 496 67.3
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 9.6e-169 597.4 488 64.5
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.3e-168 597.0 486 67.3
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.7e-168 595.5 470 65.3
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 6.2e-168 594.7 494 69.2
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 8.1e-168 594.3 488 64.3
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.4e-167 593.6 522 62.1
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 4.0e-167 592.0 444 70.0
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 5.3e-167 591.7 485 67.4
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 2.6e-166 589.3 481 65.9
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 2.6e-166 589.3 403 74.4
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 5.8e-166 588.2 487 67.8
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 2.2e-165 586.3 516 63.4
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 2.9e-165 585.9 484 68.6
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.1e-164 583.9 378 75.1
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.4e-164 583.6 498 63.7
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 5.5e-164 581.6 545 59.4
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 9.3e-164 580.9 374 77.0
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.6e-163 580.1 363 80.2
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 2.7e-163 579.3 485 64.7
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 6.0e-163 578.2 494 62.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.0e-162 577.4 477 63.9
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.8e-162 576.6 491 65.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 5.6e-161 571.6 333 83.8
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 9.6e-161 570.9 491 66.4
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 5.3e-159 565.1 501 62.7
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 5.3e-159 565.1 489 64.8
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 6.9e-159 564.7 468 67.7
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 4.5e-158 562.0 492 62.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 1.1e-156 557.4 487 64.3
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 5.5e-156 555.1 499 61.5
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.6e-155 553.5 487 63.4
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.3e-154 550.4 454 66.1
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 2.3e-154 549.7 417 72.4
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 3.9e-154 548.9 481 65.9
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.5e-153 547.0 445 65.2
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 4.3e-153 545.4 343 77.6
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 5.7e-153 545.0 489 60.7
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 3.8e-149 532.3 475 58.7
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 6.5e-149 531.6 486 59.9
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 8.7e-146 521.2 274 91.2
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.3e-144 517.3 279 88.5
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 4.8e-144 515.4 501 56.3
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 1.4e-138 497.3 332 72.0
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.3e-138 496.5 477 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 6.5e-133 478.4 330 70.3
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-130 470.7 441 58.0
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.4e-129 465.7 354 67.5
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.3e-128 464.2 572 50.7
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.7e-128 463.8 335 69.6
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.8e-127 460.3 416 62.0
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.0e-122 444.5 276 75.4
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 3.7e-120 436.0 461 54.2
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 4.1e-119 432.6 488 52.3
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.1e-119 431.4 355 63.1
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.4e-113 412.5 454 52.6
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 4.7e-107 392.5 392 54.6
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 1.7e-101 374.0 365 53.2
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 4.3e-100 369.4 337 56.1
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.7e-99 365.9 287 65.2
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 2.3e-93 347.1 485 49.5
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 6.6e-77 292.4 260 56.9
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.4e-63 247.3 473 38.9
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.4e-55 220.7 386 37.3
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 2.1e-43 181.0 261 45.2
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.0e-40 172.2 400 34.5
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.0e-37 160.6 120 69.2
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.1e-31 142.1 213 47.4
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 1.5e-28 131.7 81 76.5
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.3e-27 128.6 140 55.7
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 7.4e-20 102.8 110 55.5
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.7e-20 102.4 168 40.5
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.3e-19 102.1 106 56.6
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 5.3e-18 96.7 225 38.2
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 9.1e-10 69.3 208 28.4
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 7.7e-09 66.2 208 24.5
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 8.5e-08 62.8 207 25.6
Medtr4g087670 Medicago truncatula HOM05D004480 ORTHO05D263555 6.1e-06 56.6 52 48.1
Medtr8g090145 Medicago truncatula HOM05D004480 ORTHO05D005546 8.0e-06 56.2 208 31.7


User provided reference genes

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