Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 0.0e+00 1129.4 547 100.0
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.2e-265 919.5 549 82.5
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.1e-264 914.8 547 82.4
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 3.0e-251 871.7 543 79.6
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 8.4e-230 800.4 540 71.1
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 9.3e-229 797.0 533 72.8
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 9.3e-229 797.0 543 71.5
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 4.6e-228 794.7 512 73.6
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.0e-227 793.5 551 70.4
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 6.7e-227 790.8 549 70.7
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 4.3e-226 788.1 476 77.7
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 4.3e-226 788.1 546 70.9
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 5.7e-226 787.7 546 72.0
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 9.6e-226 786.9 543 70.7
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 9.6e-226 786.9 469 77.6
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 1.6e-225 786.2 536 72.4
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 3.7e-225 785.0 547 69.8
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 3.7e-225 785.0 546 70.5
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 6.2e-225 784.3 575 68.5
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.1e-224 783.5 544 69.9
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.4e-224 783.1 553 69.3
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 5.3e-224 781.2 539 71.4
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 9.0e-224 780.4 466 77.9
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 2.0e-223 779.2 544 70.2
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 4.5e-223 778.1 469 77.8
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 5.8e-223 777.7 544 71.0
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 5.8e-223 777.7 550 70.2
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 5.8e-223 777.7 498 74.9
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 7.6e-223 777.3 490 75.7
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 7.6e-223 777.3 500 73.0
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 1.0e-222 776.9 527 71.3
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.3e-222 776.5 542 69.0
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 2.9e-222 775.4 468 76.7
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 2.9e-222 775.4 550 68.7
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 5.0e-222 774.6 461 77.9
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 5.0e-222 774.6 517 71.2
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 8.4e-222 773.9 461 79.0
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.1e-221 773.5 465 78.5
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.9e-221 772.7 566 68.0
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 3.2e-221 771.9 562 67.3
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 3.2e-221 771.9 553 68.9
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 5.5e-221 771.2 546 68.9
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 2.1e-220 769.2 501 73.1
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 2.7e-220 768.8 472 75.4
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 6.1e-220 767.7 550 68.5
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 6.1e-220 767.7 547 69.8
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 6.1e-220 767.7 544 68.8
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 7.9e-220 767.3 546 68.9
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.0e-219 765.4 546 68.7
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 3.9e-219 765.0 546 68.7
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 5.1e-219 764.6 496 72.0
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.9e-218 762.7 548 69.5
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 2.5e-218 762.3 544 68.2
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.5e-218 762.3 546 68.1
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 3.3e-218 761.9 466 76.4
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 4.3e-218 761.5 554 67.5
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.3e-217 760.0 475 75.2
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 4.8e-217 758.1 464 76.1
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 4.8e-217 758.1 500 72.0
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 8.2e-217 757.3 465 77.0
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 8.2e-217 757.3 462 75.5
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 1.1e-216 756.9 460 76.7
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 4.1e-216 755.0 491 72.3
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 6.9e-216 754.2 544 67.6
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 6.9e-216 754.2 538 68.8
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 2.0e-215 752.7 499 71.7
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 2.6e-215 752.3 480 74.2
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 2.6e-215 752.3 462 75.5
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 5.9e-215 751.1 464 75.4
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 5.9e-215 751.1 623 62.1
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 2.9e-214 748.8 517 68.9
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 3.8e-214 748.4 462 76.2
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.1e-213 746.9 464 75.0
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.1e-213 746.9 466 75.3
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 1.4e-213 746.5 618 61.8
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 3.2e-213 745.3 492 71.5
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 3.2e-213 745.3 466 75.5
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 3.2e-213 745.3 466 75.3
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 2.1e-212 742.7 466 75.1
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 2.7e-212 742.3 470 74.7
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 3.6e-212 741.9 466 75.1
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 3.6e-212 741.9 466 74.9
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 1.0e-211 740.3 511 69.5
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 1.4e-211 740.0 548 66.4
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 5.7e-210 734.6 461 74.6
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 7.4e-210 734.2 543 67.2
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 9.7e-210 733.8 489 70.1
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 9.7e-210 733.8 475 73.3
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 9.7e-210 733.8 476 72.1
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.3e-209 733.4 437 78.0
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 2.8e-209 732.3 528 69.3
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.0e-207 726.1 531 67.6
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 3.4e-207 725.3 476 72.5
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.5e-207 724.9 537 68.0
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 5.9e-207 724.5 496 70.0
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 5.5e-205 718.0 459 75.2
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.0e-202 709.5 657 56.2
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 4.4e-202 708.4 553 65.3
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 2.5e-197 692.6 425 75.5
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 3.2e-197 692.2 461 70.3
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 3.0e-195 685.6 461 69.6
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 5.2e-195 684.9 422 75.1
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 3.3e-194 682.2 469 72.1
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 7.5e-186 654.4 474 69.2
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 7.5e-186 654.4 443 70.0
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 1.4e-184 650.2 564 58.7
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 5.9e-183 644.8 465 66.0
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.7e-182 643.3 466 63.3
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 7.2e-181 637.9 468 63.7
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.5e-178 630.2 482 62.9
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 2.2e-177 626.3 422 70.6
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 2.8e-177 625.9 452 64.6
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 2.8e-177 625.9 462 65.6
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.2e-175 620.5 465 63.4
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 1.7e-174 616.7 460 63.9
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 3.6e-172 609.0 461 62.9
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.3e-165 585.5 475 60.0
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.6e-164 583.6 457 61.1
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 2.3e-163 579.7 444 66.7
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.2e-162 577.4 362 74.6
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 3.0e-158 562.8 482 58.1
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.7e-143 513.1 394 66.0
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.4e-139 500.7 353 68.0
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 2.1e-127 460.3 503 48.9
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 3.7e-116 422.9 422 50.0
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 4.0e-115 419.5 287 73.2
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 2.2e-113 413.7 256 73.8
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.6e-111 407.5 317 64.0
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.9e-97 360.1 262 64.1
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 2.6e-93 347.1 327 55.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 2.2e-89 334.0 258 60.9
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 5.5e-88 329.3 232 70.3
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 7.9e-87 325.5 215 67.9
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 3.2e-80 303.5 243 60.1
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 2.9e-65 253.8 228 63.2
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 2.3e-54 217.6 171 64.3
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 4.9e-52 209.9 144 68.8
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.7e-47 193.4 113 77.0
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 2.1e-39 167.9 100 81.0
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 3.4e-37 160.6 158 55.7
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 7.5e-37 159.5 178 50.0
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 5.4e-35 153.3 91 73.6
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 3.0e-33 147.5 115 63.5
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 8.9e-30 136.0 95 69.5
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 7.3e-16 89.7 113 46.9
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 2.1e-15 88.2 58 62.1
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 4.5e-13 80.5 48 83.3
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 4.5e-13 80.5 48 83.3
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 7.1e-11 73.2 44 84.1
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 6.0e-10 70.1 58 62.1
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 1.5e-08 65.5 63 58.7
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 1.9e-08 65.1 57 56.1
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 3.7e-07 60.8 191 24.1
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 4.8e-07 60.5 76 47.4


User provided reference genes

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