Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 3.5e-109 398.3 201 100.0
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 6.7e-84 314.3 199 77.9
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 1.1e-73 280.4 196 70.4
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 4.0e-68 261.9 199 66.3
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.8e-65 253.1 203 64.0
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 3.1e-65 252.3 201 63.7
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.1e-62 243.8 191 62.3
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.5e-62 243.4 195 61.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.5e-62 242.7 197 59.9
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 3.3e-62 242.3 196 58.7
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.6e-61 240.0 197 59.4
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 4.7e-61 238.4 196 58.7
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.0e-60 237.3 199 55.3
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 1.4e-60 236.9 196 56.1
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 6.8e-60 234.6 195 58.5
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 6.8e-60 234.6 191 61.8
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 8.9e-60 234.2 196 58.2
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 8.9e-60 234.2 191 57.1
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.2e-59 233.8 199 59.3
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.5e-59 233.4 191 60.7
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 4.4e-59 231.9 191 60.2
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 4.4e-59 231.9 199 58.8
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 7.5e-59 231.1 191 59.2
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 9.8e-59 230.7 199 57.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.3e-58 230.3 191 60.2
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.7e-58 229.9 193 57.0
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.2e-58 229.6 197 59.9
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 4.9e-58 228.4 199 54.8
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 6.3e-58 228.0 195 56.9
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.1e-57 227.3 196 57.7
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 1.8e-57 226.5 195 55.9
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 2.4e-57 226.1 196 55.1
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.1e-57 225.3 203 55.7
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 4.1e-57 225.3 198 56.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 5.4e-57 224.9 195 59.0
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.6e-56 223.4 193 57.5
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.0e-56 223.0 199 53.8
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.0e-56 223.0 196 54.1
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 3.5e-56 222.2 191 56.5
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 5.9e-56 221.5 199 56.8
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 5.9e-56 221.5 195 54.9
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 5.9e-56 221.5 185 57.3
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.7e-55 219.9 199 54.3
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.7e-55 219.9 174 62.1
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 2.3e-55 219.5 190 57.9
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.3e-55 219.5 196 54.6
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 2.3e-55 219.5 196 56.6
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 2.9e-55 219.2 197 54.8
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 2.9e-55 219.2 193 56.0
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.9e-55 219.2 191 55.0
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.8e-55 218.8 196 54.6
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 3.8e-55 218.8 198 56.6
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 8.6e-55 217.6 199 55.8
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 8.6e-55 217.6 191 54.5
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.1e-54 217.2 197 54.8
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 1.5e-54 216.9 199 55.3
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.5e-54 216.9 191 55.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.9e-54 216.5 195 52.3
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 2.5e-54 216.1 196 56.6
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 3.3e-54 215.7 193 53.4
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.3e-54 215.7 194 54.1
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.3e-54 215.7 195 52.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 3.3e-54 215.7 195 53.3
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 7.3e-54 214.5 199 52.3
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 1.2e-53 213.8 195 53.8
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.6e-53 213.4 191 53.9
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-53 213.4 191 55.5
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.8e-53 212.6 199 55.3
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 3.6e-53 212.2 196 54.1
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 4.7e-53 211.8 197 52.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 4.7e-53 211.8 196 52.6
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 6.1e-53 211.5 196 51.0
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 6.1e-53 211.5 196 51.0
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 6.1e-53 211.5 189 51.3
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 8.0e-53 211.1 246 45.9
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 8.0e-53 211.1 191 55.0
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.4e-52 210.3 196 51.5
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 1.8e-52 209.9 195 50.3
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.8e-52 209.9 195 53.8
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.1e-52 209.1 187 52.9
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 3.1e-52 209.1 192 52.6
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 4.0e-52 208.8 197 52.3
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.0e-51 206.5 196 50.5
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 2.6e-51 206.1 195 51.8
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.4e-51 205.7 194 53.1
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 3.4e-51 205.7 195 52.8
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 4.4e-51 205.3 195 50.3
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 4.4e-51 205.3 196 53.6
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 4.4e-51 205.3 185 54.1
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 5.8e-51 204.9 193 51.3
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 5.8e-51 204.9 193 51.8
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 5.8e-51 204.9 195 51.3
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 7.5e-51 204.5 197 52.8
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.5e-51 204.5 195 52.8
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 9.8e-51 204.1 187 54.5
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 1.3e-50 203.8 200 50.0
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 2.2e-50 203.0 195 51.3
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 3.7e-50 202.2 195 53.3
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 4.9e-50 201.8 197 51.3
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 6.4e-50 201.4 190 51.6
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 2.4e-49 199.5 193 48.7
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-49 199.5 191 52.4
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-49 199.5 191 53.4
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.4e-49 199.5 191 52.9
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 4.1e-49 198.7 201 51.2
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 4.1e-49 198.7 202 52.0
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 7.0e-49 198.0 189 49.2
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 7.0e-49 198.0 189 48.7
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 7.0e-49 198.0 193 49.7
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 7.0e-49 198.0 193 48.7
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 9.2e-49 197.6 191 52.4
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 2.0e-48 196.4 195 50.8
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-48 196.1 191 52.4
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 2.7e-48 196.1 196 49.5
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 3.5e-48 195.7 195 51.8
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 3.5e-48 195.7 189 48.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 4.6e-48 195.3 195 51.8
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 6.0e-48 194.9 192 49.5
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 7.8e-48 194.5 196 50.5
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-47 194.1 181 53.6
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.7e-47 193.4 198 50.0
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 1.7e-47 193.4 195 49.2
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-47 193.4 191 51.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 5.0e-47 191.8 196 51.5
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 6.6e-47 191.4 188 53.7
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 6.6e-47 191.4 191 52.4
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 6.6e-47 191.4 192 51.6
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.5e-46 190.3 189 47.6
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.9e-46 189.9 189 47.6
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.3e-46 189.1 199 50.3
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 4.3e-46 188.7 174 54.6
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 4.3e-46 188.7 191 52.9
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 2.8e-45 186.0 191 50.3
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 3.6e-45 185.7 146 59.6
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.3e-44 183.0 175 52.6
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 4.0e-44 182.2 163 53.4
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 1.2e-43 180.6 179 53.1
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.3e-42 177.2 189 45.0
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 6.4e-42 174.9 165 53.3
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.1e-41 174.1 189 45.0
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 9.2e-41 171.0 147 55.1
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 3.0e-39 166.0 143 53.1
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 1.9e-38 163.3 196 42.9
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.2e-37 158.3 202 43.6
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.2e-37 158.3 191 44.5
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 8.1e-37 157.9 162 49.4
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 8.1e-37 157.9 191 41.9
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.3e-36 156.4 147 51.7
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 6.8e-36 154.8 196 39.8
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 2.2e-34 149.8 130 55.4
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 4.9e-34 148.7 197 40.6
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.9e-33 146.7 146 50.7
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 4.1e-33 145.6 129 51.9
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.2e-33 144.4 157 46.5
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.6e-32 143.7 160 49.4
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.0e-31 141.0 203 40.4
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 1.7e-31 140.2 196 41.8
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 1.7e-31 140.2 203 40.4
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 1.5e-30 137.1 194 38.7
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 1.9e-30 136.7 130 50.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 9.5e-30 134.4 189 40.7
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.7e-29 132.1 161 44.1
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 5.8e-27 125.2 113 54.0
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 3.0e-23 112.8 98 54.1
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 5.8e-19 98.6 196 34.2
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 4.9e-18 95.5 195 31.3
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.4e-17 93.2 183 35.0
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 7.8e-16 88.2 87 51.7
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 3.0e-15 86.3 112 43.8
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.9e-15 85.9 166 33.7
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 6.6e-15 85.1 105 44.8
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.6e-13 80.5 164 31.1
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.8e-13 79.7 210 28.1
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.6e-11 71.6 76 46.1
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.7e-10 70.5 197 26.4
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 3.8e-10 69.3 160 30.0
FAN12G1760 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.3e-07 60.1 107 39.3
FvH4_4g02900 Fragaria vesca HOM05D003838 ORTHO05D004444 3.9e-07 59.3 83 43.4


User provided reference genes

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