Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 4.0e-99 364.8 184 100.0
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 7.3e-77 290.8 185 83.2
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 3.1e-75 285.4 185 80.0
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 9.9e-74 280.4 185 80.0
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.2e-73 279.3 185 78.4
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.2e-73 279.3 185 78.4
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 6.4e-73 277.7 185 77.8
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 8.3e-73 277.3 185 78.9
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.1e-72 276.9 185 79.5
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.4e-72 276.6 185 79.5
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.9e-72 276.2 185 78.4
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.9e-72 276.2 185 77.8
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.9e-72 276.2 185 77.3
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 2.4e-72 275.8 185 77.8
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 3.2e-72 275.4 185 77.8
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 3.2e-72 275.4 185 79.5
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 4.1e-72 275.0 184 77.2
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 4.1e-72 275.0 185 78.4
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 7.1e-72 274.2 185 77.8
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 7.1e-72 274.2 185 77.8
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.1e-72 274.2 185 78.4
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 7.1e-72 274.2 185 77.3
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 9.2e-72 273.9 185 77.3
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 9.2e-72 273.9 185 78.4
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 1.2e-71 273.5 185 77.3
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 2.1e-71 272.7 185 76.8
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 2.1e-71 272.7 185 77.3
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 2.1e-71 272.7 185 76.2
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 2.7e-71 272.3 185 76.8
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 2.7e-71 272.3 185 76.8
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 3.5e-71 271.9 185 76.8
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 4.6e-71 271.6 185 77.3
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 4.6e-71 271.6 185 76.2
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 6.0e-71 271.2 185 77.3
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 6.0e-71 271.2 185 75.7
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 7.8e-71 270.8 185 76.2
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.0e-70 270.4 185 76.2
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 1.0e-70 270.4 185 76.2
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.0e-70 270.4 185 76.8
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.0e-70 270.4 185 76.2
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.3e-70 270.0 185 75.7
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.3e-70 270.0 185 75.7
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.3e-70 270.0 184 77.7
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 1.3e-70 270.0 185 76.2
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.3e-70 270.0 185 76.2
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.3e-70 270.0 185 77.8
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.7e-70 269.6 185 75.7
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.7e-70 269.6 185 75.1
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.7e-70 269.6 185 75.1
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 2.3e-70 269.2 185 76.2
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 2.3e-70 269.2 185 76.8
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 2.3e-70 269.2 185 75.1
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 2.3e-70 269.2 185 76.2
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 3.0e-70 268.9 185 76.2
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 3.0e-70 268.9 185 76.2
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.9e-70 268.5 185 77.3
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 3.9e-70 268.5 185 74.6
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.1e-70 268.1 186 76.9
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 5.1e-70 268.1 185 75.1
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 6.6e-70 267.7 185 75.7
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 6.6e-70 267.7 183 76.5
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 6.6e-70 267.7 185 75.7
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 8.6e-70 267.3 186 76.3
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 8.6e-70 267.3 185 74.6
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.1e-69 266.9 185 76.8
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 1.5e-69 266.5 185 74.6
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.5e-69 266.5 185 75.1
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 1.9e-69 266.2 185 74.6
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.9e-69 266.2 183 76.0
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.9e-69 266.2 185 75.1
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.9e-69 266.2 185 75.1
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 2.5e-69 265.8 185 74.6
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.5e-69 265.8 186 75.8
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 3.3e-69 265.4 185 73.5
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 4.3e-69 265.0 185 74.6
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 4.3e-69 265.0 185 75.7
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 5.6e-69 264.6 185 73.5
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 5.6e-69 264.6 185 73.5
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.6e-69 264.6 185 76.2
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 5.6e-69 264.6 185 74.6
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 7.3e-69 264.2 185 74.1
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 7.3e-69 264.2 185 75.1
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 7.3e-69 264.2 185 73.5
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 7.3e-69 264.2 185 73.5
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 7.3e-69 264.2 185 74.6
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 9.6e-69 263.8 185 73.5
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 9.6e-69 263.8 185 73.0
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.2e-68 263.5 185 73.5
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.6e-68 263.1 185 74.6
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 2.1e-68 262.7 185 74.1
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 2.8e-68 262.3 177 76.8
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 2.8e-68 262.3 185 73.0
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 3.6e-68 261.9 185 73.0
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 3.6e-68 261.9 185 73.0
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 4.7e-68 261.5 185 73.5
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 4.7e-68 261.5 185 72.4
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 1.8e-67 259.6 185 72.4
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 2.4e-67 259.2 185 72.4
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 4.0e-67 258.5 185 71.9
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 4.0e-67 258.5 185 72.4
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 4.0e-67 258.5 185 71.9
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 4.0e-67 258.5 185 71.9
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 4.0e-67 258.5 185 72.4
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 5.2e-67 258.1 185 72.4
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 6.8e-67 257.7 185 74.1
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 6.8e-67 257.7 185 72.4
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 1.2e-66 256.9 185 73.5
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.5e-66 256.5 213 67.1
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 2.0e-66 256.1 185 71.9
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 3.4e-66 255.4 185 73.0
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 7.6e-66 254.2 206 67.0
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 7.6e-66 254.2 185 71.9
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 9.9e-66 253.8 171 77.2
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 1.7e-65 253.1 185 70.3
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 6.4e-65 251.1 171 76.6
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 4.2e-64 248.4 185 68.1
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 9.3e-64 247.3 185 67.6
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 9.3e-64 247.3 185 68.1
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 7.8e-63 244.2 185 66.5
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 8.7e-62 240.7 185 67.6
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.1e-61 240.4 186 69.4
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 1.8e-59 233.0 185 63.8
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.4e-56 222.6 185 63.2
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 4.2e-56 221.9 226 57.5
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 2.1e-55 219.5 185 66.5
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 2.7e-55 219.2 185 60.5
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.5e-55 218.8 185 61.1
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.7e-54 216.5 185 66.5
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.7e-54 216.5 185 66.5
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 1.6e-52 209.9 143 76.9
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.6e-52 208.8 185 59.5
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 1.7e-49 199.9 139 74.8
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.7e-49 199.9 112 88.4
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.7e-49 199.9 112 88.4
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 1.7e-49 199.9 112 88.4
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.2e-49 199.5 143 71.3
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 2.4e-48 196.1 151 68.9
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.6e-47 193.4 185 56.8
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 6.0e-47 191.4 112 83.9
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 1.8e-46 189.9 112 82.1
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 1.8e-46 189.9 112 83.0
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.3e-46 189.5 185 54.1
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 5.1e-46 188.3 112 83.0
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.5e-45 186.8 190 53.2
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.5e-45 186.8 142 64.8
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 4.8e-44 181.8 134 69.4
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 4.9e-41 171.8 183 53.6
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 3.9e-38 162.2 184 53.3
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 5.1e-38 161.8 183 52.5
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 3.3e-37 159.1 95 81.1
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.2e-31 140.6 184 46.2
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 2.5e-29 132.9 111 67.6
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 6.9e-27 124.8 73 83.6
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 9.4e-24 114.4 112 58.9
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 2.3e-22 109.8 90 65.6
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 2.9e-17 92.8 62 79.0
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 4.5e-10 68.9 98 41.8
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 5.5e-08 62.0 42 76.2
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 2.1e-07 60.1 32 87.5
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 2.3e-06 56.6 36 75.0


User provided reference genes

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