Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 9.7e-98 360.1 182 100.0
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 6.1e-68 261.2 183 77.0
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 2.6e-66 255.8 181 74.6
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 2.6e-66 255.8 181 74.6
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 7.5e-66 254.2 182 74.2
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 7.5e-66 254.2 182 74.2
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 3.5e-63 245.4 185 71.9
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 5.9e-63 244.6 182 70.3
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.3e-62 243.4 183 72.1
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.3e-62 243.4 186 68.8
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 2.3e-62 242.7 186 70.4
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.6e-62 241.1 149 79.2
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.6e-62 241.1 182 70.3
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.6e-62 241.1 182 70.3
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 8.6e-62 240.7 182 69.8
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 8.6e-62 240.7 182 70.9
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 8.6e-62 240.7 182 69.2
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 2.5e-61 239.2 182 68.7
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 2.5e-61 239.2 182 68.7
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 3.3e-61 238.8 182 69.8
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 7.3e-61 237.7 183 69.9
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 7.3e-61 237.7 184 69.0
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 9.5e-61 237.3 149 78.5
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 9.5e-61 237.3 152 76.3
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 6.1e-60 234.6 189 68.3
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 6.1e-60 234.6 185 71.4
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.0e-59 233.8 144 78.5
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 1.4e-59 233.4 183 68.3
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.8e-59 233.0 188 69.7
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.8e-59 233.0 182 67.0
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 2.3e-59 232.6 182 69.8
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 2.3e-59 232.6 183 66.7
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 2.3e-59 232.6 185 67.6
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 3.0e-59 232.3 185 70.8
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.0e-59 232.3 166 73.5
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 3.0e-59 232.3 182 67.0
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 3.0e-59 232.3 182 68.1
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 4.0e-59 231.9 150 77.3
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 6.8e-59 231.1 182 66.5
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 6.8e-59 231.1 182 66.5
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.8e-59 231.1 144 77.8
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 8.9e-59 230.7 182 65.9
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 1.2e-58 230.3 149 75.8
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 1.2e-58 230.3 182 68.7
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.5e-58 229.9 137 82.5
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 2.0e-58 229.6 169 71.0
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 2.0e-58 229.6 166 73.5
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 2.0e-58 229.6 171 69.6
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 2.6e-58 229.2 183 67.8
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.6e-58 229.2 186 69.4
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.6e-58 229.2 186 67.2
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 3.4e-58 228.8 186 67.7
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 4.4e-58 228.4 183 66.1
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 5.7e-58 228.0 188 67.6
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 5.7e-58 228.0 152 76.3
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 7.5e-58 227.6 183 67.8
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 9.8e-58 227.3 176 66.5
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 1.3e-57 226.9 184 68.5
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 1.7e-57 226.5 153 74.5
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 2.2e-57 226.1 195 65.6
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 2.2e-57 226.1 149 75.8
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 3.7e-57 225.3 170 68.8
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 8.3e-57 224.2 152 75.0
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 1.1e-56 223.8 188 67.0
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.1e-56 223.8 186 64.5
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 1.4e-56 223.4 189 67.7
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 1.4e-56 223.4 183 68.3
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 1.8e-56 223.0 174 68.4
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 4.1e-56 221.9 184 64.7
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 7.0e-56 221.1 120 85.8
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 7.0e-56 221.1 149 74.5
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 7.0e-56 221.1 149 74.5
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 9.2e-56 220.7 125 84.8
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 9.2e-56 220.7 186 63.4
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.2e-55 220.3 177 66.7
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 1.6e-55 219.9 182 65.4
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 1.6e-55 219.9 182 65.4
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 1.6e-55 219.9 182 65.4
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 1.6e-55 219.9 184 64.1
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 2.0e-55 219.5 185 64.9
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 2.7e-55 219.2 150 73.3
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 2.7e-55 219.2 150 73.3
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 3.5e-55 218.8 171 67.3
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.6e-55 218.4 164 70.7
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 4.6e-55 218.4 184 65.8
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 5.9e-55 218.0 149 73.2
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 1.0e-54 217.2 183 66.7
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.3e-54 216.9 130 80.8
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 1.7e-54 216.5 184 66.3
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 2.3e-54 216.1 183 62.3
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 2.3e-54 216.1 183 66.1
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 3.0e-54 215.7 189 63.0
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 3.9e-54 215.3 184 61.4
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 5.0e-54 214.9 183 62.8
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 6.6e-54 214.5 149 71.8
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 8.6e-54 214.2 182 63.2
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 8.6e-54 214.2 164 67.7
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 8.6e-54 214.2 189 65.1
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 1.2e-52 210.3 169 67.5
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 2.8e-52 209.1 185 64.9
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.0e-51 207.2 185 64.3
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.0e-51 207.2 129 78.3
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 1.4e-51 206.8 169 66.3
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.8e-51 206.5 152 69.7
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 4.0e-51 205.3 169 66.3
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 5.2e-51 204.9 188 64.4
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.2e-50 203.8 184 64.7
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 2.9e-49 199.1 188 61.2
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 8.3e-49 197.6 152 67.1
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 8.3e-49 197.6 295 44.7
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 3.2e-48 195.7 151 68.2
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 4.1e-48 195.3 295 44.1
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 5.4e-48 194.9 175 61.7
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.4e-48 194.9 183 58.5
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 2.0e-47 193.0 145 67.6
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.8e-47 191.0 172 59.9
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 1.7e-46 189.9 195 57.9
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 1.1e-45 187.2 180 62.2
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 7.3e-45 184.5 173 59.0
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 3.6e-44 182.2 187 61.5
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 6.2e-44 181.4 121 74.4
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 8.3e-41 171.0 122 68.9
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 4.6e-39 165.2 214 49.1
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.3e-38 163.7 170 55.3
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 1.7e-38 163.3 162 54.3
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 5.8e-34 148.3 82 89.0
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.6e-34 147.9 87 82.8
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 9.9e-34 147.5 87 81.6
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 6.4e-33 144.8 105 60.0
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 8.4e-33 144.4 82 87.8
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.1e-32 141.4 87 75.9
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 1.3e-30 137.1 97 66.0
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 8.6e-30 134.4 87 73.6
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 1.8e-27 126.7 82 78.0
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 8.9e-27 124.4 87 74.7
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 9.9e-26 120.9 153 44.4
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.6e-18 96.3 106 53.8
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 1.4e-16 90.5 54 77.8
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 3.5e-15 85.9 63 69.8
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.0e-15 85.1 84 59.5
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 1.9e-13 80.1 54 72.2
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.3e-12 77.4 100 47.0
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 2.4e-11 73.2 69 44.9
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 1.7e-09 67.0 67 55.2
Pp3c6_9300 Physcomitrium patens HOM05D005249 ORTHO05D006457 6.0e-07 58.5 66 42.4
RcHm_v2.0_Chr5g0038161 Rosa chinensis HOM05D000371 ORTHO05D006340 6.0e-07 58.5 123 39.8
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 1.8e-06 57.0 99 41.4
FvH4_3g22200 Fragaria vesca HOM05D000371 ORTHO05D006340 8.7e-06 54.7 99 41.4


User provided reference genes

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