Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold254G45232 Striga asiatica HOM05D005319 ORTHO05D006632 0.0e+00 1521.1 800 100.0
MSTRG.16462 Avicennia marina HOM05D005319 ORTHO05D006632 0.0e+00 1122.5 833 72.3
Hma1.2p1_0052F.1_g030050 Hydrangea macrophylla HOM05D005319 ORTHO05D006632 1.3e-274 949.9 805 62.5
CSS0036760 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 4.6e-269 931.4 790 60.8
vmacro19823 Vaccinium macrocarpon HOM05D005319 ORTHO05D006632 2.3e-268 929.1 853 58.9
CSS0030211 Camellia sinensis var. sinensis HOM05D005319 ORTHO05D006632 6.3e-266 921.0 770 61.7
unitig_8.g2963 Utricularia gibba HOM05D005319 ORTHO05D006632 1.5e-259 899.8 811 60.0
Manes.07G031200 Manihot esculenta HOM05D005319 ORTHO05D006632 4.1e-257 891.7 777 60.7
Rhsim05G0118000 Rhododendron simsii HOM05D005319 ORTHO05D006632 1.2e-256 890.2 773 60.2
TAR628G0438 Trochodendron aralioides HOM05D005319 ORTHO05D006632 5.0e-255 884.8 776 58.2
Nitab4.5_0003247g0020 Nicotiana tabacum HOM05D005319 ORTHO05D006632 3.2e-254 882.1 824 59.0
Lj5A285G49 Lonicera japonica HOM05D005319 ORTHO05D006632 3.6e-253 878.6 800 58.6
CAN.G855.58 Capsicum annuum HOM05D005319 ORTHO05D006632 3.9e-252 875.2 776 59.7
Cc02_g23690 Coffea canephora HOM05D005319 ORTHO05D006632 8.8e-252 874.0 822 58.8
Migut.B00712 Erythranthe guttata HOM05D005319 ORTHO05D006632 1.7e-250 869.8 616 75.3
Actinidia26200 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.7e-250 868.6 827 56.6
Atru.chr6.211 Acer truncatum HOM05D005319 ORTHO05D006632 1.5e-248 863.2 846 56.3
Sopen01g045380 Solanum pennellii HOM05D005319 ORTHO05D006632 2.2e-247 859.4 849 56.9
Ciclev10000238m.g Citrus clementina HOM05D005319 ORTHO05D006632 3.8e-247 858.6 794 56.2
Nitab4.5_0005164g0040 Nicotiana tabacum HOM05D005319 ORTHO05D006632 8.5e-247 857.4 840 57.5
Solyc01g102970.3 Solanum lycopersicum HOM05D005319 ORTHO05D006632 1.1e-246 857.1 840 57.3
Haze_09972 Corylus avellana HOM05D005319 ORTHO05D006632 8.0e-245 850.9 820 56.7
Potri.004G229732 Populus trichocarpa HOM05D005319 ORTHO05D006632 1.3e-242 843.6 781 56.1
Peaxi162Scf00011g02012 Petunia axillaris HOM05D005319 ORTHO05D006632 1.8e-241 839.7 819 58.7
Cfa004432 Carpinus fangiana HOM05D005319 ORTHO05D006632 3.1e-241 839.0 774 55.7
Nn4g24765 Nelumbo nucifera HOM05D005319 ORTHO05D006632 5.5e-238 828.2 786 55.9
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 9.4e-238 827.4 768 54.8
Gorai.009G114100 Gossypium raimondii HOM05D005319 ORTHO05D006632 3.0e-236 822.4 761 56.1
Thecc.06G020300 Theobroma cacao HOM05D005319 ORTHO05D006632 2.0e-235 819.7 766 55.9
GSVIVG01023136001 Vitis vinifera HOM05D005319 ORTHO05D006632 3.3e-235 818.9 767 56.5
ClCG11G000090 Citrullus lanatus HOM05D005319 ORTHO05D006632 7.5e-235 817.8 733 55.7
Medtr8g015930 Medicago truncatula HOM05D005319 ORTHO05D006632 3.7e-234 815.5 764 54.8
Gohir.D05G110000 Gossypium hirsutum HOM05D005319 ORTHO05D006632 4.8e-234 815.1 759 55.7
Gohir.A05G109700 Gossypium hirsutum HOM05D005319 ORTHO05D006632 6.3e-234 814.7 761 55.5
Nn5g27146 Nelumbo nucifera HOM05D005319 ORTHO05D006632 8.2e-234 814.3 776 54.4
Lj5g0014697 Lotus japonicus HOM05D005319 ORTHO05D006632 3.1e-233 812.4 756 55.7
arahy.Tifrunner.gnm1.ann1.2TW5YI Arachis hypogaea HOM05D005319 ORTHO05D006632 7.0e-233 811.2 766 55.0
QL02p103594 Quercus lobata HOM05D005319 ORTHO05D006632 2.7e-232 809.3 774 55.2
TPR.G5958 Trifolium pratense HOM05D005319 ORTHO05D006632 5.9e-232 808.1 777 54.3
VMungo1127G0564 Vigna mungo HOM05D005319 ORTHO05D006632 1.0e-231 807.4 776 54.9
Psat1g223960 Pisum sativum HOM05D005319 ORTHO05D006632 2.2e-231 806.2 773 54.5
Duzib192G0868 Durio zibethinus HOM05D005319 ORTHO05D006632 3.8e-231 805.4 794 53.0
PGR142G1786 Punica granatum HOM05D005319 ORTHO05D006632 6.5e-231 804.7 773 54.9
FvH4_5g27610 Fragaria vesca HOM05D005319 ORTHO05D006632 8.5e-231 804.3 761 55.7
RcHm_v2.0_Chr7g0219031 Rosa chinensis HOM05D005319 ORTHO05D006632 1.9e-230 803.1 761 55.3
FAN18G0588 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.6e-229 798.9 755 55.6
Sabra01G0174900 Salix brachista HOM05D005319 ORTHO05D006632 4.0e-228 795.4 768 54.4
Glyma.16G000500 Glycine max HOM05D005319 ORTHO05D006632 6.8e-228 794.7 781 53.4
FAN13G2205 Fragaria x ananassa HOM05D005319 ORTHO05D006632 2.6e-227 792.7 787 54.6
Glyma.12G164200 Glycine max HOM05D005319 ORTHO05D006632 4.4e-227 792.0 785 53.0
Sc12g0006940 Simmondsia chinensis HOM05D005319 ORTHO05D006632 1.3e-226 790.4 816 51.8
Prupe.1G586100 Prunus persica HOM05D005319 ORTHO05D006632 2.2e-226 789.6 819 54.1
COL.COLO4_31114 Corchorus olitorius HOM05D005319 ORTHO05D006632 4.8e-226 788.5 759 55.3
Sed0027556 Sechium edule HOM05D005319 ORTHO05D006632 1.1e-225 787.3 789 52.9
Gorai.011G090800 Gossypium raimondii HOM05D005319 ORTHO05D006632 5.4e-225 785.0 773 53.8
Phvul.006G221600 Phaseolus vulgaris HOM05D005319 ORTHO05D006632 7.0e-225 784.6 781 53.0
CANSAT01G0698 Cannabis sativa HOM05D005319 ORTHO05D006632 4.5e-224 781.9 776 54.0
CsaV3_5G027480 Cucumis sativus L. HOM05D005319 ORTHO05D006632 1.3e-223 780.4 813 51.9
MD15G1443600 Malus domestica HOM05D005319 ORTHO05D006632 8.6e-223 777.7 766 54.4
MD08G1248800 Malus domestica HOM05D005319 ORTHO05D006632 1.2e-221 773.9 767 54.1
Gohir.D10G083500 Gossypium hirsutum HOM05D005319 ORTHO05D006632 4.7e-221 771.9 769 53.2
Aqoxy6G00019 Aquilegia oxysepala HOM05D005319 ORTHO05D006632 2.0e-219 766.5 792 51.6
Eucgr.I02798 Eucalyptus grandis HOM05D005319 ORTHO05D006632 7.5e-219 764.6 660 57.1
MELO3C022920.2 Cucumis melo HOM05D005319 ORTHO05D006632 1.3e-218 763.8 728 52.7
Dinv29683 Davidia involucrata HOM05D005319 ORTHO05D006632 1.3e-218 763.8 742 55.8
ECA240G4281 Erigeron canadensis HOM05D005319 ORTHO05D006632 2.8e-218 762.7 753 53.0
Lalb_Chr18g0061161 Lupinus albus HOM05D005319 ORTHO05D006632 2.8e-218 762.7 753 53.7
AUR62042963 Chenopodium quinoa HOM05D005319 ORTHO05D006632 1.4e-217 760.4 773 52.5
HanXRQChr03g0090101 Helianthus annuus HOM05D005319 ORTHO05D006632 1.8e-217 760.0 763 53.2
THA.LOC104806623 Tarenaya hassleriana HOM05D005319 ORTHO05D006632 2.4e-217 759.6 759 51.1
FAN04G2290 Fragaria x ananassa HOM05D005319 ORTHO05D006632 3.5e-216 755.7 745 54.1
Lsat_1_v5_gn_9_125320 Lactuca sativa HOM05D005319 ORTHO05D006632 4.4e-211 738.8 763 53.2
Thhalv10024416m.g Eutrema salsugineum HOM05D005319 ORTHO05D006632 1.7e-210 736.9 766 51.2
AUR62041124 Chenopodium quinoa HOM05D005319 ORTHO05D006632 2.9e-210 736.1 814 50.0
Sp7g22260 Schrenkiella parvula HOM05D005319 ORTHO05D006632 2.4e-209 733.0 766 51.4
PSO017G2844 Papaver somniferum HOM05D005319 ORTHO05D006632 6.0e-208 728.4 770 50.0
PSO170G3892 Papaver somniferum HOM05D005319 ORTHO05D006632 6.6e-207 724.9 770 49.4
BcaC09g50887 Brassica carinata HOM05D005319 ORTHO05D006632 3.3e-206 722.6 805 49.2
HPP92_001202 Vanilla planifolia HOM05D005319 ORTHO05D006632 4.7e-205 718.8 763 50.6
C01p19580 Brassica napus HOM05D005319 ORTHO05D006632 2.3e-204 716.5 797 49.1
CDE07G1780 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 5.2e-204 715.3 823 48.2
Carub.0007s1678 Capsella rubella HOM05D005319 ORTHO05D006632 9.8e-203 711.1 803 47.9
AL7G28980 Arabidopsis lyrata HOM05D005319 ORTHO05D006632 1.7e-202 710.3 813 48.2
AT4G24270 Arabidopsis thaliana HOM05D005319 ORTHO05D006632 1.7e-202 710.3 805 48.9
BolC1t01883H Brassica oleracea HOM05D005319 ORTHO05D006632 3.2e-201 706.1 798 48.7
CARHR231700 Cardamine hirsuta HOM05D005319 ORTHO05D006632 2.7e-200 703.0 763 49.1
BraA01t01501Z Brassica rapa HOM05D005319 ORTHO05D006632 4.6e-200 702.2 763 49.0
BcaNung01135 Brassica carinata HOM05D005319 ORTHO05D006632 6.6e-199 698.4 801 49.1
A01p15600 Brassica napus HOM05D005319 ORTHO05D006632 1.1e-198 697.6 766 49.3
Zm00001eb260720 Zea mays HOM05D005319 ORTHO05D006632 2.5e-198 696.4 774 48.3
Aa31LG7G10320 Aethionema arabicum HOM05D005319 ORTHO05D006632 6.2e-197 691.8 781 47.4
Cpa.g.sc173.4 Carica papaya HOM05D005319 ORTHO05D006632 2.5e-190 669.8 742 50.0
CiPaw.05G159300 Carya illinoinensis HOM05D005319 ORTHO05D006632 2.0e-187 660.2 477 65.0
DCAR_003273 Daucus carota HOM05D005319 ORTHO05D006632 1.7e-186 657.1 822 46.6
CDE04G1013 Ceratophyllum demersum HOM05D005319 ORTHO05D006632 4.9e-186 655.6 736 47.0
Os08g0113200 Oryza sativa ssp. japonica HOM05D005319 ORTHO05D006632 6.0e-184 648.7 778 45.5
Prupe.2G119000 Prunus persica HOM05D005319 ORTHO05D006632 9.3e-177 624.8 752 48.5
ATR1089G095 Amborella trichopoda HOM05D005319 ORTHO05D006632 1.5e-166 590.9 671 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2043 Anthoceros agrestis HOM05D005319 ORTHO05D006632 1.2e-163 581.3 798 41.6
Pp3c2_22040 Physcomitrium patens HOM05D005319 ORTHO05D006632 2.2e-162 577.0 796 40.1
SMO367G0583 Selaginella moellendorffii HOM05D005319 ORTHO05D006632 7.9e-152 542.0 736 39.9
SHI04989 Sapria himalayana HOM05D005319 ORTHO05D006632 6.7e-151 538.9 544 51.8
EL10As26g24243 Beta vulgaris HOM05D005319 ORTHO05D006632 2.8e-149 533.5 387 65.4
Mapoly0013s0201 Marchantia polymorpha HOM05D005319 ORTHO05D006632 6.5e-146 522.3 784 38.0
Gohir.A10G157900 Gossypium hirsutum HOM05D005319 ORTHO05D006632 7.2e-145 518.8 576 49.1
Ca_00016_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 1.5e-134 484.6 545 49.0
MBI03_g21086_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 6.3e-133 479.2 387 58.9
Oeu043602.1 Olea europaea HOM05D005319 ORTHO05D006632 2.9e-130 470.3 466 59.2
CBR_g44339 Chara braunii HOM05D005319 ORTHO05D006632 2.3e-127 460.7 786 36.4
Actinidia01642 Actinidia chinensis HOM05D005319 ORTHO05D006632 3.5e-123 446.8 489 49.5
ECA247G0718 Erigeron canadensis HOM05D005319 ORTHO05D006632 7.2e-105 386.0 437 50.3
PGSC0003DMG400020717 Solanum tuberosum HOM05D005319 ORTHO05D006632 3.4e-86 323.9 374 53.2
Oeu043603.1 Olea europaea HOM05D005319 ORTHO05D006632 4.4e-86 323.6 449 45.2
Cre12.g546700 Chlamydomonas reinhardtii HOM05D005319 ORTHO05D006632 5.4e-84 316.6 531 35.8
MBI03_g34263_MAGBIO Magnolia biondii HOM05D005319 ORTHO05D006632 1.0e-82 312.4 395 45.8
C01p22600 Brassica napus HOM05D005319 ORTHO05D006632 1.6e-67 261.9 234 55.1
EL10As26g24244 Beta vulgaris HOM05D005319 ORTHO05D006632 1.7e-66 258.5 387 43.2
Hund15346 Selenicereus undatus HOM05D005319 ORTHO05D006632 2.9e-45 188.0 325 40.3
Ca_28127_v3 Cicer arietinum L. HOM05D005319 ORTHO05D006632 6.5e-45 186.8 187 50.3
PRCOL_00002327 Prasinoderma coloniale HOM05D005319 ORTHO05D006632 1.9e-36 158.7 480 24.0
CiPaw.05G159200 Carya illinoinensis HOM05D005319 ORTHO05D006632 4.8e-32 144.1 153 52.9
MCO03G034 Micromonas commoda HOM05D005319 ORTHO05D006632 4.6e-27 127.5 196 37.8
SEGI_30405 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 5.1e-26 124.0 128 47.7
Lj1A1166G72 Lonicera japonica HOM05D005319 ORTHO05D006632 6.7e-26 123.6 182 43.4
SHI04988 Sapria himalayana HOM05D005319 ORTHO05D006632 3.1e-23 114.8 131 48.1
Ciclev10004084m.g Citrus clementina HOM05D005319 ORTHO05D006632 2.0e-22 112.1 80 63.8
BcaC09g50640 Brassica carinata HOM05D005319 ORTHO05D006632 1.7e-21 109.0 213 33.8
SHI04990 Sapria himalayana HOM05D005319 ORTHO05D006632 1.8e-15 89.0 117 46.2
SEGI_30773 Sequoiadendron giganteum HOM05D005319 ORTHO05D006632 6.5e-13 80.5 99 42.4
Oeu016642.3 Olea europaea HOM05D001586 ORTHO05D001543 1.5e-12 79.3 66 60.6
Lj1A1166G73 Lonicera japonica HOM05D005319 ORTHO05D006632 1.2e-11 76.3 140 40.7
Lj6A128G22 Lonicera japonica HOM05D005319 ORTHO05D006632 3.0e-10 71.6 146 35.6
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 5.7e-09 67.4 471 19.3
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.4e-07 62.0 67 50.7
Hma1.2p1_0586F.1_g183745 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 2.4e-07 62.0 46 60.9
Hma1.2p1_0643F.1_g194445 Hydrangea macrophylla HOM05D000033 ORTHO05D000913 2.4e-07 62.0 46 60.9
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 4.1e-07 61.2 42 66.7
CDE11G0963 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 5.3e-07 60.8 336 22.9
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 1.2e-06 59.7 266 22.6
CBR_g40786 Chara braunii HOM05D002279 ORTHO05D002644 2.0e-06 58.9 190 24.2
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 2.0e-06 58.9 344 25.0
BcaC05g29306 Brassica carinata HOM05D003161 ORTHO05D005173 2.7e-06 58.5 257 21.8
C05p55950 Brassica napus HOM05D003161 ORTHO05D005173 2.7e-06 58.5 257 21.8
BolC5t34262H Brassica oleracea HOM05D003161 ORTHO05D005173 2.7e-06 58.5 257 21.8
Atru.chr8.1220 Acer truncatum HOM05D003161 ORTHO05D005173 5.9e-06 57.4 275 23.6
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 7.7e-06 57.0 348 24.1


User provided reference genes

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