Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10598 Striga asiatica HOM05D033197 ORTHO05D404201 1.0e-96 356.7 178 100.0
SGA_v2.0_scaffold88G27264 Striga asiatica HOM05D033197 ORTHO05D404531 6.5e-14 81.6 64 71.9
SGA_v2.0_scaffold20G09016 Striga asiatica HOM05D033197 ORTHO05D405701 4.2e-13 79.0 66 71.2
MSTRG.25259 Avicennia marina HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
CSS0021497 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
CSS0023183 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
ClCG09G010550 Citrullus lanatus HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
MELO3C003842.2 Cucumis melo HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
Dinv15073 Davidia involucrata HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
Dinv39530 Davidia involucrata HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
Lj1C1148G8 Lonicera japonica HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
MBI05_g23391_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
Nn5g30744 Nelumbo nucifera HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
SGA_v2.0_scaffold92G28212 Striga asiatica HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
unitig_32.g11227 Utricularia gibba HOM05D000032 ORTHO05D006669 4.1e-08 62.4 34 94.1
Cc00_g14370 Coffea canephora HOM05D000032 ORTHO05D006669 5.3e-08 62.0 34 91.2
CsaV3_3G045070 Cucumis sativus L. HOM05D000032 ORTHO05D006669 9.1e-08 61.2 34 91.2
Manes.18G012300 Manihot esculenta HOM05D000032 ORTHO05D006669 9.1e-08 61.2 34 91.2
Oeu007360.3 Olea europaea HOM05D000032 ORTHO05D006669 9.1e-08 61.2 34 91.2
QL02p011979 Quercus lobata HOM05D000032 ORTHO05D006669 9.1e-08 61.2 34 91.2
QL12p004290 Quercus lobata HOM05D000032 ORTHO05D006669 9.1e-08 61.2 34 91.2
GSVIVG01009935001 Vitis vinifera HOM05D000032 ORTHO05D006669 9.1e-08 61.2 34 91.2
Actinidia16996 Actinidia chinensis HOM05D000032 ORTHO05D006669 1.2e-07 60.8 34 91.2
ATR0090G023 Amborella trichopoda HOM05D000032 ORTHO05D006669 1.2e-07 60.8 34 88.2
Hma1.2p1_0274F.1_g110360 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 1.2e-07 60.8 34 91.2
Hma1.2p1_0274F.1_g110370 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 1.2e-07 60.8 34 91.2
Sed0016675 Sechium edule HOM05D000032 ORTHO05D006669 1.2e-07 60.8 34 88.2
TAR628G0705 Trochodendron aralioides HOM05D000032 ORTHO05D006669 1.2e-07 60.8 34 91.2
Cpa.g.sc29.166 Carica papaya HOM05D000032 ORTHO05D006669 1.6e-07 60.5 34 88.2
CDE02G3483 Ceratophyllum demersum HOM05D000032 ORTHO05D006669 1.6e-07 60.5 34 88.2
CDE04G2938 Ceratophyllum demersum HOM05D000032 ORTHO05D006669 1.6e-07 60.5 34 88.2
Haze_22652 Corylus avellana HOM05D000032 ORTHO05D006669 1.6e-07 60.5 38 81.6
CAN.G311.43 Capsicum annuum HOM05D000032 ORTHO05D006669 2.0e-07 60.1 34 88.2
Potri.005G241300 Populus trichocarpa HOM05D000032 ORTHO05D006669 2.0e-07 60.1 34 88.2
Sabra05G0186800 Salix brachista HOM05D000032 ORTHO05D006669 2.0e-07 60.1 34 88.2
Sopen04g035190 Solanum pennellii HOM05D000032 ORTHO05D006669 2.0e-07 60.1 34 88.2
PGSC0003DMG400009873 Solanum tuberosum HOM05D000032 ORTHO05D006669 2.0e-07 60.1 34 88.2
HPP92_018598 Vanilla planifolia HOM05D000032 ORTHO05D006669 2.0e-07 60.1 34 88.2
Zm00001eb318210 Zea mays HOM05D000032 ORTHO05D006669 2.0e-07 60.1 34 85.3
Ca_14808_v3 Cicer arietinum L. HOM05D000032 ORTHO05D006669 2.6e-07 59.7 34 88.2
Glyma.08G313100 Glycine max HOM05D000032 ORTHO05D006669 2.6e-07 59.7 34 88.2
Glyma.18G101600 Glycine max HOM05D000032 ORTHO05D006669 2.6e-07 59.7 34 88.2
Medtr2g041140 Medicago truncatula HOM05D000032 ORTHO05D006669 2.6e-07 59.7 34 88.2
Psat5g176240 Pisum sativum HOM05D000032 ORTHO05D006669 2.6e-07 59.7 34 88.2
vmacro07575 Vaccinium macrocarpon HOM05D000032 ORTHO05D006669 2.6e-07 59.7 34 88.2
HPP92_018594 Vanilla planifolia HOM05D000032 ORTHO05D032836 2.6e-07 59.7 34 88.2
VMungo0540G0072 Vigna mungo HOM05D000032 ORTHO05D006669 2.6e-07 59.7 34 88.2
Ciclev10000409m.g Citrus clementina HOM05D000032 ORTHO05D006669 3.5e-07 59.3 34 88.2
Dinv20301 Davidia involucrata HOM05D000032 ORTHO05D032836 3.5e-07 59.3 34 88.2
Migut.C00853 Erythranthe guttata HOM05D000032 ORTHO05D006669 3.5e-07 59.3 34 85.3
Lj6g0002233 Lotus japonicus HOM05D000032 ORTHO05D006669 3.5e-07 59.3 34 85.3
Medtr3g049990 Medicago truncatula HOM05D000032 ORTHO05D006669 3.5e-07 59.3 34 88.2
Aa31LG2G12780 Aethionema arabicum HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
Aqoxy7G02510 Aquilegia oxysepala HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
AL7G38120 Arabidopsis lyrata HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
AT4G16630 Arabidopsis thaliana HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
BcaB07g32127 Brassica carinata HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
BcaC05g26047 Brassica carinata HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
BcaC07g38004 Brassica carinata HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
BcaC09g50392 Brassica carinata HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
A08p12610 Brassica napus HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
BolC1t02546H Brassica oleracea HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
BolC8t48384H Brassica oleracea HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
BraA08t33251Z Brassica rapa HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
Carub.0007s2477 Capsella rubella HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
Eucgr.A00214 Eucalyptus grandis HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
Lalb_Chr20g0113951 Lupinus albus HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 88.2
Nitab4.5_0005970g0030 Nicotiana tabacum HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
Peaxi162Scf00553g00813 Petunia axillaris HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
Sp7g15250 Schrenkiella parvula HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
THA.LOC104815496 Tarenaya hassleriana HOM05D000032 ORTHO05D006669 4.5e-07 58.9 34 85.3
Atru.chr11.1620 Acer truncatum HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 85.3
Atru.chr13.268 Acer truncatum HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 85.3
CiPaw.07G148200 Carya illinoinensis HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 88.2
DCAR_023755 Daucus carota HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 88.2
Lj6g0027027 Lotus japonicus HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 85.3
PSO541G2252 Papaver somniferum HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 85.3
PSO675G8850 Papaver somniferum HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 85.3
Rhsim06G0019900 Rhododendron simsii HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 85.3
TWI56G0435 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 5.9e-07 58.5 34 88.2
EL10Ac1g02170 Beta vulgaris HOM05D000032 ORTHO05D006669 7.7e-07 58.2 44 70.5
Phvul.006G039100 Phaseolus vulgaris HOM05D000032 ORTHO05D006669 7.7e-07 58.2 34 85.3
SHI08056 Sapria himalayana HOM05D000032 ORTHO05D006669 7.7e-07 58.2 34 82.4
TWI36G0775 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 7.7e-07 58.2 34 85.3
Ah.00g000290 Amaranthus hybridus HOM05D000032 ORTHO05D006669 1.0e-06 57.8 34 82.4
arahy.Tifrunner.gnm1.ann1.CZI2M2 Arachis hypogaea HOM05D000032 ORTHO05D006669 1.0e-06 57.8 34 85.3
arahy.Tifrunner.gnm1.ann1.KG3JNQ Arachis hypogaea HOM05D000032 ORTHO05D006669 1.0e-06 57.8 34 85.3
Gohir.A05G185800 Gossypium hirsutum HOM05D000032 ORTHO05D006669 1.0e-06 57.8 34 85.3
Gohir.D05G188600 Gossypium hirsutum HOM05D000032 ORTHO05D006669 1.0e-06 57.8 34 85.3
Gorai.009G193900 Gossypium raimondii HOM05D000032 ORTHO05D006669 1.0e-06 57.8 34 85.3
CANSAT64G1040 Cannabis sativa HOM05D000032 ORTHO05D006669 1.3e-06 57.4 34 85.3
CARHR223130 Cardamine hirsuta HOM05D000032 ORTHO05D006669 1.3e-06 57.4 34 82.4
Os12g0481100 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D006669 1.3e-06 57.4 34 79.4
Pp3c9_14310 Physcomitrium patens HOM05D000032 ORTHO05D006669 1.3e-06 57.4 34 82.4
Hund01599 Selenicereus undatus HOM05D000032 ORTHO05D006669 1.3e-06 57.4 58 58.6
Sc15g0004880 Simmondsia chinensis HOM05D000032 ORTHO05D006669 1.3e-06 57.4 34 79.4
Zm00001eb102610 Zea mays HOM05D000032 ORTHO05D006669 1.3e-06 57.4 34 79.4
HanXRQChr13g0412281 Helianthus annuus HOM05D000032 ORTHO05D006669 1.7e-06 57.0 34 82.4
COL.COLO4_26129 Corchorus olitorius HOM05D000032 ORTHO05D006669 2.2e-06 56.6 34 82.4
PGR042G0181 Punica granatum HOM05D000032 ORTHO05D006669 2.2e-06 56.6 34 79.4
A01p20760 Brassica napus HOM05D000032 ORTHO05D006669 2.9e-06 56.2 34 82.4
BraA01t01995Z Brassica rapa HOM05D000032 ORTHO05D006669 2.9e-06 56.2 34 82.4
FvH4_2g38260 Fragaria vesca HOM05D000032 ORTHO05D006669 2.9e-06 56.2 34 79.4
FAN15G3432 Fragaria x ananassa HOM05D000032 ORTHO05D006669 2.9e-06 56.2 34 79.4
FAN20G2235 Fragaria x ananassa HOM05D000032 ORTHO05D006669 2.9e-06 56.2 34 79.4
FAN27G2308 Fragaria x ananassa HOM05D000032 ORTHO05D006669 2.9e-06 56.2 34 79.4
RcHm_v2.0_Chr6g0303111 Rosa chinensis HOM05D000032 ORTHO05D006669 2.9e-06 56.2 34 79.4
HanXRQChr16g0529991 Helianthus annuus HOM05D000032 ORTHO05D006669 3.8e-06 55.8 34 79.4
Prupe.1G363600 Prunus persica HOM05D000032 ORTHO05D006669 3.8e-06 55.8 34 82.4
TPR.G11499 Trifolium pratense HOM05D000032 ORTHO05D006669 3.8e-06 55.8 34 85.3
AUR62040549 Chenopodium quinoa HOM05D000032 ORTHO05D006669 5.0e-06 55.5 44 65.9
AUR62041487 Chenopodium quinoa HOM05D000032 ORTHO05D006669 5.0e-06 55.5 44 65.9
ECA238G1643 Erigeron canadensis HOM05D000032 ORTHO05D006669 5.0e-06 55.5 34 79.4
ECA240G2120 Erigeron canadensis HOM05D000032 ORTHO05D006669 5.0e-06 55.5 34 79.4
Lsat_1_v5_gn_8_10200 Lactuca sativa HOM05D000032 ORTHO05D006669 5.0e-06 55.5 34 79.4
Mapoly0090s0088 Marchantia polymorpha HOM05D000032 ORTHO05D006669 5.0e-06 55.5 34 73.5
Thecc.08G046400 Theobroma cacao HOM05D000032 ORTHO05D006669 5.0e-06 55.5 34 79.4


User provided reference genes

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