Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.6e-200 702.6 360 100.0
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 2.3e-127 459.5 334 72.5
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 3.1e-124 449.1 341 73.0
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 1.4e-119 433.7 326 70.2
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 3.9e-106 389.0 332 65.4
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.5e-105 387.1 332 65.4
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.8e-103 380.2 327 63.9
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 9.8e-102 374.4 330 63.6
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 4.9e-101 372.1 285 70.2
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 4.9e-101 372.1 327 62.7
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 2.4e-100 369.8 327 62.4
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 3.2e-100 369.4 278 70.5
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 4.1e-100 369.0 261 75.5
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.2e-99 367.5 324 61.7
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 2.0e-99 366.7 327 63.0
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 4.6e-99 365.5 247 77.3
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.5e-97 360.5 314 65.3
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 1.9e-97 360.1 327 62.7
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 1.2e-96 357.5 243 77.0
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 2.8e-96 356.3 254 74.8
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 6.2e-96 355.1 227 81.1
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 1.1e-95 354.4 261 72.8
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 1.1e-95 354.4 227 80.6
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 1.1e-95 354.4 212 82.1
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 1.4e-95 354.0 210 84.3
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 1.4e-95 354.0 263 72.6
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 2.3e-95 353.2 313 61.7
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 4.0e-95 352.4 335 63.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.0e-95 352.4 243 73.3
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 8.9e-95 351.3 209 84.2
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 8.9e-95 351.3 327 61.8
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.5e-94 350.5 214 80.8
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.0e-94 350.1 263 72.2
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 2.0e-94 350.1 263 72.2
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 2.0e-94 350.1 246 75.6
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 2.6e-94 349.7 330 62.1
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 4.4e-94 349.0 238 77.3
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 5.8e-94 348.6 272 71.0
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 7.5e-94 348.2 211 84.8
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 9.8e-94 347.8 265 70.2
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.3e-93 347.4 223 79.8
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 1.7e-93 347.1 216 81.9
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 1.7e-93 347.1 264 72.0
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 1.7e-93 347.1 280 67.9
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 1.7e-93 347.1 224 77.7
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.2e-93 346.7 201 86.6
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 8.3e-93 344.7 213 81.7
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.4e-92 344.0 200 85.5
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.2e-92 342.8 249 73.1
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 4.1e-92 342.4 211 82.5
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 5.4e-92 342.0 211 82.0
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 9.2e-92 341.3 240 76.7
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 1.2e-91 340.9 214 79.0
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 6.0e-91 338.6 204 82.8
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 6.0e-91 338.6 262 67.2
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 1.0e-90 337.8 219 78.1
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 1.0e-90 337.8 219 78.1
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 1.3e-90 337.4 219 81.3
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.7e-90 337.0 286 63.6
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.7e-90 337.0 238 73.5
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.3e-90 336.7 251 72.9
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.3e-90 336.7 263 67.3
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.9e-90 335.9 320 59.7
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 6.6e-90 335.1 214 78.0
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 8.6e-90 334.7 204 82.4
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.5e-89 334.0 244 69.3
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.5e-89 334.0 333 60.1
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 1.9e-89 333.6 263 69.6
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 2.5e-89 333.2 223 75.3
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 2.5e-89 333.2 273 66.7
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.3e-89 332.8 218 76.6
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 5.6e-89 332.0 358 53.4
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 1.6e-88 330.5 229 76.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.1e-88 330.1 281 66.2
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 2.8e-88 329.7 206 82.5
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 2.8e-88 329.7 206 82.5
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 3.6e-88 329.3 205 82.9
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 4.7e-88 328.9 206 82.0
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 6.2e-88 328.6 236 72.5
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 8.1e-88 328.2 205 82.9
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 1.1e-87 327.8 206 82.0
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 1.4e-87 327.4 203 81.3
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.4e-87 327.4 234 76.1
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 3.1e-87 326.2 234 75.6
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 3.1e-87 326.2 229 75.5
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 4.0e-87 325.9 234 75.6
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 6.8e-87 325.1 242 73.1
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 1.2e-86 324.3 234 74.8
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.5e-86 323.9 229 76.4
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 1.5e-86 323.9 367 52.6
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 3.4e-86 322.8 302 59.3
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 4.4e-86 322.4 242 69.8
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 5.8e-86 322.0 206 81.6
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.9e-85 319.7 229 75.1
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 4.9e-85 318.9 204 81.4
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 4.9e-85 318.9 215 74.0
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 6.4e-85 318.5 203 79.3
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 9.2e-84 314.7 204 80.4
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 1.2e-83 314.3 204 80.4
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 7.8e-83 311.6 201 78.1
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.0e-82 311.2 189 81.5
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.3e-82 310.8 234 72.2
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 3.0e-82 309.7 208 77.9
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 6.6e-82 308.5 350 53.1
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 7.3e-81 305.1 165 90.3
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 8.7e-74 281.6 218 68.3
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 4.8e-72 275.8 280 52.9
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 2.4e-71 273.5 212 67.5
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 1.3e-64 251.1 229 65.1
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 4.5e-62 242.7 238 55.0
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 2.2e-61 240.4 142 81.0
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 4.6e-59 232.6 190 61.1
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.7e-51 206.8 165 60.6
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 4.6e-51 206.1 183 56.8
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 2.3e-50 203.8 185 57.3
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 1.9e-49 200.7 181 55.8
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.5e-44 182.6 125 76.8
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 7.2e-44 182.2 176 52.3
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 2.8e-40 170.2 178 49.4
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.8e-39 167.5 143 62.2
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 1.4e-34 151.4 158 55.1
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 6.7e-26 122.5 150 40.7
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 4.1e-23 113.2 65 84.6
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 6.1e-19 99.4 100 63.0
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.2e-16 90.9 53 84.9
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.6e-14 84.7 61 75.4


User provided reference genes

Program Settings