Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 6.9e-53 210.3 102 100.0
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 8.6e-27 123.6 58 98.3
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 8.6e-27 123.6 58 98.3
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 8.6e-27 123.6 58 98.3
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 8.6e-27 123.6 58 98.3
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 8.6e-27 123.6 58 98.3
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 8.6e-27 123.6 58 98.3
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 8.6e-27 123.6 58 98.3
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 1.1e-26 123.2 58 98.3
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 1.5e-26 122.9 58 96.6
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 1.5e-26 122.9 58 96.6
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 2.5e-26 122.1 58 96.6
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 2.5e-26 122.1 58 96.6
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 3.3e-26 121.7 58 96.6
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 3.3e-26 121.7 62 90.3
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 4.2e-26 121.3 57 98.2
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 5.5e-26 120.9 58 94.8
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 7.2e-26 120.6 57 98.2
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 9.5e-26 120.2 58 96.6
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 9.5e-26 120.2 58 96.6
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 9.5e-26 120.2 58 96.6
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 9.5e-26 120.2 58 96.6
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 9.5e-26 120.2 57 96.5
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 1.6e-25 119.4 57 94.7
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 1.6e-25 119.4 58 96.6
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 1.6e-25 119.4 57 96.5
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.6e-25 119.4 58 96.6
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.6e-25 119.4 58 96.6
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 1.6e-25 119.4 57 94.7
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 1.6e-25 119.4 58 94.8
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 2.1e-25 119.0 57 94.7
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 2.1e-25 119.0 57 94.7
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 2.1e-25 119.0 57 94.7
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 2.1e-25 119.0 57 94.7
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 2.1e-25 119.0 57 94.7
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 2.1e-25 119.0 57 94.7
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 2.1e-25 119.0 58 94.8
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 2.1e-25 119.0 58 94.8
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 2.8e-25 118.6 57 93.0
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 3.6e-25 118.2 57 96.5
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 3.6e-25 118.2 57 94.7
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 3.6e-25 118.2 57 94.7
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 4.7e-25 117.9 57 93.0
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 4.7e-25 117.9 57 93.0
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 4.7e-25 117.9 57 93.0
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 4.7e-25 117.9 56 94.6
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 4.7e-25 117.9 57 93.0
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 4.7e-25 117.9 57 94.7
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 4.7e-25 117.9 57 94.7
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 6.1e-25 117.5 57 94.7
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 6.1e-25 117.5 57 94.7
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 8.0e-25 117.1 57 93.0
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 8.0e-25 117.1 57 93.0
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 8.0e-25 117.1 57 93.0
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 8.0e-25 117.1 57 94.7
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 8.0e-25 117.1 57 94.7
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 1.0e-24 116.7 57 93.0
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 1.0e-24 116.7 57 93.0
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 1.0e-24 116.7 57 93.0
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 1.0e-24 116.7 57 93.0
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 1.0e-24 116.7 57 94.7
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 1.4e-24 116.3 57 91.2
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 1.8e-24 115.9 57 93.0
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 1.8e-24 115.9 56 96.4
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 1.8e-24 115.9 57 93.0
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 2.3e-24 115.5 57 91.2
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 2.3e-24 115.5 57 91.2
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 3.0e-24 115.2 57 91.2
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 3.0e-24 115.2 57 91.2
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 3.0e-24 115.2 57 91.2
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 3.0e-24 115.2 57 91.2
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 3.0e-24 115.2 57 91.2
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 3.0e-24 115.2 57 91.2
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 4.0e-24 114.8 57 93.0
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 5.2e-24 114.4 57 89.5
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 91.2
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 93.0
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 6.8e-24 114.0 57 93.0
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 8.9e-24 113.6 57 89.5
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 8.9e-24 113.6 57 89.5
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 1.2e-23 113.2 55 92.7
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 1.2e-23 113.2 57 91.2
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 1.5e-23 112.8 68 77.9
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.5e-23 112.8 57 91.2
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.5e-23 112.8 57 91.2
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 1.5e-23 112.8 57 91.2
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 1.5e-23 112.8 57 91.2
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 2.0e-23 112.5 52 98.1
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 2.6e-23 112.1 57 91.2
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 2.6e-23 112.1 57 91.2
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 3.4e-23 111.7 51 100.0
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 4.4e-23 111.3 57 89.5
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 5.7e-23 110.9 52 96.2
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 5.7e-23 110.9 52 96.2
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 5.7e-23 110.9 52 96.2
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 7.5e-23 110.5 51 98.0
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 7.5e-23 110.5 51 98.0
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 9.8e-23 110.2 52 94.2
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 9.8e-23 110.2 52 94.2
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.3e-22 109.8 55 92.7
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.3e-22 109.8 55 92.7
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.7e-22 109.4 53 90.6
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.7e-22 109.4 53 90.6
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 1.7e-22 109.4 51 96.1
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 1.7e-22 109.4 52 94.2
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 2.2e-22 109.0 51 98.0
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 2.8e-22 108.6 52 94.2
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 3.7e-22 108.2 73 74.0
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 3.7e-22 108.2 52 96.2
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 4.9e-22 107.8 67 76.1
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.9e-22 107.8 53 92.5
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 6.3e-22 107.5 52 92.3
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.1e-21 106.7 53 86.8
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 1.1e-21 106.7 57 86.0
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 1.4e-21 106.3 52 92.3
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 1.4e-21 106.3 52 92.3
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 4.1e-21 104.8 57 87.7
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 4.1e-21 104.8 52 90.4
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 7.0e-21 104.0 55 81.8
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 1.6e-20 102.8 89 60.7
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 1.6e-20 102.8 58 79.3
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 3.5e-20 101.7 55 83.6
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 3.3e-18 95.1 109 49.5
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 4.0e-16 88.2 41 95.1
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 2.0e-15 85.9 57 71.9
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 4.4e-15 84.7 127 43.3
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 2.9e-14 82.0 88 51.1
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 2.9e-14 82.0 46 82.6
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 1.2e-12 76.6 37 94.6
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 1.7e-11 72.8 76 55.3
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 3.3e-10 68.6 32 96.9
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.3e-10 68.6 32 96.9
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 3.6e-09 65.1 37 78.4
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 4.7e-09 64.7 30 93.3
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 4.7e-09 64.7 30 93.3
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 4.7e-09 64.7 32 90.6
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 2.3e-08 62.4 51 51.0
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 1.5e-07 59.7 51 51.0


User provided reference genes

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