Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10512 Striga asiatica HOM05D033877 ORTHO05D403531 1.8e-120 436.0 230 100.0
SGA_v2.0_scaffold92G28212 Striga asiatica HOM05D000032 ORTHO05D006669 1.6e-36 157.1 167 61.7
MSTRG.25259 Avicennia marina HOM05D000032 ORTHO05D006669 7.6e-31 138.3 150 58.7
Cc00_g14370 Coffea canephora HOM05D000032 ORTHO05D006669 2.2e-30 136.7 150 58.0
Migut.C00853 Erythranthe guttata HOM05D000032 ORTHO05D006669 2.2e-30 136.7 165 53.9
Oeu007360.3 Olea europaea HOM05D000032 ORTHO05D006669 1.1e-29 134.4 150 54.7
EL10Ac1g02170 Beta vulgaris HOM05D000032 ORTHO05D006669 1.9e-29 133.7 172 49.4
Hma1.2p1_0274F.1_g110360 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 7.1e-29 131.7 159 52.2
RcHm_v2.0_Chr6g0303111 Rosa chinensis HOM05D000032 ORTHO05D006669 7.1e-29 131.7 158 56.3
Dinv15073 Davidia involucrata HOM05D000032 ORTHO05D006669 9.2e-29 131.3 171 49.1
Actinidia15433 Actinidia chinensis HOM05D000032 ORTHO05D006669 1.6e-28 130.6 149 54.4
PGSC0003DMG400009873 Solanum tuberosum HOM05D000032 ORTHO05D006669 1.6e-28 130.6 152 52.6
FAN20G2235 Fragaria x ananassa HOM05D000032 ORTHO05D006669 2.1e-28 130.2 157 56.1
Sopen04g035190 Solanum pennellii HOM05D000032 ORTHO05D006669 2.1e-28 130.2 151 53.6
Dinv39530 Davidia involucrata HOM05D000032 ORTHO05D006669 3.5e-28 129.4 171 49.1
FAN27G2308 Fragaria x ananassa HOM05D000032 ORTHO05D006669 3.5e-28 129.4 158 55.7
Potri.005G241300 Populus trichocarpa HOM05D000032 ORTHO05D006669 3.5e-28 129.4 176 47.7
Peaxi162Scf00553g00813 Petunia axillaris HOM05D000032 ORTHO05D006669 6.0e-28 128.6 170 51.2
FvH4_2g38260 Fragaria vesca HOM05D000032 ORTHO05D006669 7.8e-28 128.3 158 55.1
Actinidia16996 Actinidia chinensis HOM05D000032 ORTHO05D006669 1.0e-27 127.9 171 49.7
Ciclev10000409m.g Citrus clementina HOM05D000032 ORTHO05D006669 1.0e-27 127.9 164 49.4
Medtr3g049990 Medicago truncatula HOM05D000032 ORTHO05D006669 1.0e-27 127.9 169 49.1
TWI56G0435 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 1.3e-27 127.5 178 48.3
CSS0021497 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 1.7e-27 127.1 164 51.8
CSS0023183 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 1.7e-27 127.1 164 51.8
Ca_14808_v3 Cicer arietinum L. HOM05D000032 ORTHO05D006669 1.7e-27 127.1 151 53.0
Prupe.3G157600 Prunus persica HOM05D000032 ORTHO05D006669 1.7e-27 127.1 146 54.8
VMungo0540G0072 Vigna mungo HOM05D000032 ORTHO05D006669 2.3e-27 126.7 160 50.6
CAN.G311.43 Capsicum annuum HOM05D000032 ORTHO05D006669 3.0e-27 126.3 165 50.3
GSVIVG01009935001 Vitis vinifera HOM05D000032 ORTHO05D006669 3.0e-27 126.3 173 49.7
CiPaw.07G148200 Carya illinoinensis HOM05D000032 ORTHO05D006669 3.9e-27 125.9 206 42.7
Glyma.18G101600 Glycine max HOM05D000032 ORTHO05D006669 3.9e-27 125.9 159 49.7
Lj1C1148G8 Lonicera japonica HOM05D000032 ORTHO05D006669 8.7e-27 124.8 200 41.5
Lalb_Chr20g0113951 Lupinus albus HOM05D000032 ORTHO05D006669 1.1e-26 124.4 161 49.7
QL02p011979 Quercus lobata HOM05D000032 ORTHO05D006669 1.5e-26 124.0 176 48.9
Hund01599 Selenicereus undatus HOM05D000032 ORTHO05D006669 1.9e-26 123.6 203 42.9
THA.LOC104815496 Tarenaya hassleriana HOM05D000032 ORTHO05D006669 2.5e-26 123.2 146 54.1
Glyma.08G313100 Glycine max HOM05D000032 ORTHO05D006669 4.3e-26 122.5 165 49.1
Prupe.1G363600 Prunus persica HOM05D000032 ORTHO05D006669 4.3e-26 122.5 171 48.0
Cpa.g.sc29.166 Carica papaya HOM05D000032 ORTHO05D006669 5.6e-26 122.1 198 42.4
Lj6g0002233 Lotus japonicus HOM05D000032 ORTHO05D006669 5.6e-26 122.1 202 44.1
Lj6g0027027 Lotus japonicus HOM05D000032 ORTHO05D006669 7.3e-26 121.7 179 48.0
Nitab4.5_0005970g0030 Nicotiana tabacum HOM05D000032 ORTHO05D006669 7.3e-26 121.7 121 61.2
Medtr2g041140 Medicago truncatula HOM05D000032 ORTHO05D006669 1.3e-25 120.9 164 48.2
Atru.chr13.268 Acer truncatum HOM05D000032 ORTHO05D006669 2.1e-25 120.2 164 47.6
ECA240G2120 Erigeron canadensis HOM05D000032 ORTHO05D006669 2.1e-25 120.2 166 47.6
QL12p004290 Quercus lobata HOM05D000032 ORTHO05D006669 2.1e-25 120.2 176 47.7
Duzib093G1385 Durio zibethinus HOM05D000032 ORTHO05D006669 2.8e-25 119.8 164 47.6
MBI05_g23391_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D006669 2.8e-25 119.8 206 42.7
Phvul.006G039100 Phaseolus vulgaris HOM05D000032 ORTHO05D006669 2.8e-25 119.8 160 48.1
Sed0016675 Sechium edule HOM05D000032 ORTHO05D006669 2.8e-25 119.8 146 50.7
COL.COLO4_26129 Corchorus olitorius HOM05D000032 ORTHO05D006669 3.6e-25 119.4 164 46.3
Haze_22652 Corylus avellana HOM05D000032 ORTHO05D006669 3.6e-25 119.4 164 48.2
ClCG09G010550 Citrullus lanatus HOM05D000032 ORTHO05D006669 4.8e-25 119.0 147 48.3
Gohir.A05G185800 Gossypium hirsutum HOM05D000032 ORTHO05D006669 4.8e-25 119.0 164 47.6
Thecc.08G046400 Theobroma cacao HOM05D000032 ORTHO05D006669 4.8e-25 119.0 164 47.0
unitig_32.g11227 Utricularia gibba HOM05D000032 ORTHO05D006669 4.8e-25 119.0 122 61.5
Manes.18G012300 Manihot esculenta HOM05D000032 ORTHO05D006669 6.2e-25 118.6 118 60.2
TAR628G0705 Trochodendron aralioides HOM05D000032 ORTHO05D006669 6.2e-25 118.6 154 48.7
CANSAT64G1040 Cannabis sativa HOM05D000032 ORTHO05D006669 8.1e-25 118.2 168 47.6
DCAR_023755 Daucus carota HOM05D000032 ORTHO05D006669 8.1e-25 118.2 205 40.5
arahy.Tifrunner.gnm1.ann1.CZI2M2 Arachis hypogaea HOM05D000032 ORTHO05D006669 1.1e-24 117.9 164 47.6
arahy.Tifrunner.gnm1.ann1.KG3JNQ Arachis hypogaea HOM05D000032 ORTHO05D006669 1.1e-24 117.9 164 47.6
Nn5g30744 Nelumbo nucifera HOM05D000032 ORTHO05D006669 1.4e-24 117.5 154 50.0
MELO3C003842.2 Cucumis melo HOM05D000032 ORTHO05D006669 1.8e-24 117.1 150 48.7
Aqoxy7G02510 Aquilegia oxysepala HOM05D000032 ORTHO05D006669 2.4e-24 116.7 159 48.4
Gohir.D05G188600 Gossypium hirsutum HOM05D000032 ORTHO05D006669 2.4e-24 116.7 164 46.3
PGR042G0181 Punica granatum HOM05D000032 ORTHO05D006669 3.1e-24 116.3 173 46.2
SHI08056 Sapria himalayana HOM05D000032 ORTHO05D006669 3.1e-24 116.3 225 39.6
Gorai.009G193900 Gossypium raimondii HOM05D000032 ORTHO05D006669 4.0e-24 115.9 164 47.0
FAN15G3432 Fragaria x ananassa HOM05D000032 ORTHO05D006669 5.3e-24 115.5 176 48.3
CsaV3_3G045070 Cucumis sativus L. HOM05D000032 ORTHO05D006669 1.2e-23 114.4 150 47.3
Rhsim06G0019900 Rhododendron simsii HOM05D000032 ORTHO05D006669 1.2e-23 114.4 119 55.5
BolC1t02546H Brassica oleracea HOM05D000032 ORTHO05D006669 1.5e-23 114.0 148 48.6
Atru.chr11.1620 Acer truncatum HOM05D000032 ORTHO05D006669 2.0e-23 113.6 116 56.9
Ah.00g000290 Amaranthus hybridus HOM05D000032 ORTHO05D006669 3.4e-23 112.8 174 44.3
ECA238G1643 Erigeron canadensis HOM05D000032 ORTHO05D006669 3.4e-23 112.8 168 45.2
AUR62041487 Chenopodium quinoa HOM05D000032 ORTHO05D006669 4.4e-23 112.5 121 55.4
CDE02G3483 Ceratophyllum demersum HOM05D000032 ORTHO05D006669 5.8e-23 112.1 148 49.3
TPR.G11499 Trifolium pratense HOM05D000032 ORTHO05D006669 7.6e-23 111.7 216 38.9
vmacro07575 Vaccinium macrocarpon HOM05D000032 ORTHO05D006669 7.6e-23 111.7 120 54.2
AT4G16630 Arabidopsis thaliana HOM05D000032 ORTHO05D006669 9.9e-23 111.3 148 45.9
Psat5g176240 Pisum sativum HOM05D000032 ORTHO05D006669 9.9e-23 111.3 118 55.1
Lsat_1_v5_gn_8_10200 Lactuca sativa HOM05D000032 ORTHO05D006669 1.3e-22 110.9 231 38.5
AUR62040549 Chenopodium quinoa HOM05D000032 ORTHO05D006669 1.7e-22 110.5 119 54.6
Eucgr.A00214 Eucalyptus grandis HOM05D000032 ORTHO05D006669 1.7e-22 110.5 164 47.6
Sc15g0004880 Simmondsia chinensis HOM05D000032 ORTHO05D006669 1.7e-22 110.5 172 44.8
TWI36G0775 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 2.2e-22 110.2 184 44.0
AL7G38120 Arabidopsis lyrata HOM05D000032 ORTHO05D006669 3.8e-22 109.4 148 45.3
Carub.0007s2477 Capsella rubella HOM05D000032 ORTHO05D006669 4.9e-22 109.0 144 47.2
BcaB07g32127 Brassica carinata HOM05D000032 ORTHO05D006669 6.4e-22 108.6 149 47.7
HanXRQChr16g0529991 Helianthus annuus HOM05D000032 ORTHO05D006669 8.4e-22 108.2 166 44.0
Thhalv10024452m.g Eutrema salsugineum HOM05D000032 ORTHO05D006669 1.1e-21 107.8 146 48.6
MD01G1061100 Malus domestica HOM05D000032 ORTHO05D006669 1.1e-21 107.8 161 44.1
Sp7g15250 Schrenkiella parvula HOM05D000032 ORTHO05D006669 1.1e-21 107.8 146 48.6
BcaC09g50392 Brassica carinata HOM05D000032 ORTHO05D006669 1.4e-21 107.5 146 48.6
BraA08t33251Z Brassica rapa HOM05D000032 ORTHO05D006669 1.4e-21 107.5 123 52.8
CDE04G2938 Ceratophyllum demersum HOM05D000032 ORTHO05D006669 1.9e-21 107.1 133 48.9
A01p20760 Brassica napus HOM05D000032 ORTHO05D006669 2.4e-21 106.7 120 53.3
BraA01t01995Z Brassica rapa HOM05D000032 ORTHO05D006669 2.4e-21 106.7 120 53.3
BcaC07g38004 Brassica carinata HOM05D000032 ORTHO05D006669 7.1e-21 105.1 146 47.9
A08p12610 Brassica napus HOM05D000032 ORTHO05D006669 7.1e-21 105.1 146 47.9
BolC8t48384H Brassica oleracea HOM05D000032 ORTHO05D006669 7.1e-21 105.1 146 47.9
Sabra05G0186800 Salix brachista HOM05D000032 ORTHO05D006669 7.1e-21 105.1 177 42.4
MD15G1442700 Malus domestica HOM05D000032 ORTHO05D006669 1.2e-20 104.4 90 63.3
BcaC05g26047 Brassica carinata HOM05D000032 ORTHO05D006669 1.6e-20 104.0 146 46.6
HPP92_018594 Vanilla planifolia HOM05D000032 ORTHO05D032836 1.6e-20 104.0 148 45.3
HPP92_018598 Vanilla planifolia HOM05D000032 ORTHO05D006669 1.6e-20 104.0 148 45.3
PSO675G8850 Papaver somniferum HOM05D000032 ORTHO05D006669 2.1e-20 103.6 119 52.1
PSO541G2252 Papaver somniferum HOM05D000032 ORTHO05D006669 2.7e-20 103.2 165 41.8
HanXRQChr13g0412281 Helianthus annuus HOM05D000032 ORTHO05D006669 4.6e-20 102.4 165 41.8
CARHR223130 Cardamine hirsuta HOM05D000032 ORTHO05D006669 1.0e-19 101.3 119 48.7
Os12g0481100 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D006669 1.0e-19 101.3 124 48.4
Zm00001eb102610 Zea mays HOM05D000032 ORTHO05D006669 8.7e-19 98.2 185 40.0
Aa31LG2G12780 Aethionema arabicum HOM05D000032 ORTHO05D006669 1.1e-18 97.8 146 45.9
ATR0090G023 Amborella trichopoda HOM05D000032 ORTHO05D006669 3.3e-18 96.3 222 35.6
Zm00001eb318210 Zea mays HOM05D000032 ORTHO05D006669 1.6e-17 94.0 124 48.4
Mapoly0090s0088 Marchantia polymorpha HOM05D000032 ORTHO05D006669 9.9e-15 84.7 116 44.0
SMO169G0064 Selaginella moellendorffii HOM05D000032 ORTHO05D006669 7.9e-12 75.1 135 37.8
AagrBONN_evm.TU.Sc2ySwM_117.834 Anthoceros agrestis HOM05D000032 ORTHO05D006669 5.1e-11 72.4 166 35.5
Pp3c9_14310 Physcomitrium patens HOM05D000032 ORTHO05D006669 8.7e-11 71.6 117 42.7
SGA_v2.0_scaffold24G10547 Striga asiatica HOM05D033877 ORTHO05D400298 2.1e-09 67.0 35 88.6
Cre10.g420900 Chlamydomonas reinhardtii HOM05D000032 ORTHO05D006669 6.2e-09 65.5 85 42.4
arahy.Tifrunner.gnm1.ann1.D1T9JW Arachis hypogaea HOM05D003281 ORTHO05D011443 3.1e-08 63.2 89 44.9
arahy.Tifrunner.gnm1.ann1.B7U3FX Arachis hypogaea HOM05D002394 ORTHO05D002508 1.2e-07 61.2 98 42.9
PRCOL_00003854 Prasinoderma coloniale HOM05D000032 ORTHO05D006669 1.5e-07 60.8 90 41.1
Hma1.2p1_0274F.1_g110370 Hydrangea macrophylla HOM05D000032 ORTHO05D006669 8.4e-06 55.1 39 66.7


User provided reference genes

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