Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 3.9e-173 611.3 296 100.0
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 1.3e-152 543.1 300 89.0
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 4.3e-55 219.2 340 44.4
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 9.1e-45 184.9 388 37.9
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 1.1e-42 177.9 328 42.1
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 2.1e-41 173.7 342 40.1
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 4.8e-38 162.5 386 37.8
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 7.0e-37 158.7 326 37.7
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 3.5e-36 156.4 352 36.9
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 3.5e-36 156.4 346 36.7
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 1.0e-35 154.8 359 35.9
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 5.0e-35 152.5 359 36.2
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 8.0e-33 145.2 365 34.8
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 3.7e-30 136.3 412 34.0
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 1.6e-28 131.0 362 34.3
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 2.0e-28 130.6 398 32.4
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.7e-27 127.5 322 34.2
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 9.4e-26 121.7 337 35.0
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 1.2e-25 121.3 333 35.4
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 1.6e-25 120.9 334 35.6
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 1.6e-25 120.9 332 34.3
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 2.1e-25 120.6 334 35.6
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 2.7e-25 120.2 326 35.0
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 3.6e-25 119.8 321 34.3
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 3.6e-25 119.8 348 32.5
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 6.1e-25 119.0 329 34.0
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 1.8e-24 117.5 304 35.9
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 4.0e-24 116.3 297 36.0
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 5.2e-24 115.9 361 33.0
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 5.2e-24 115.9 369 34.1
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 1.2e-23 114.8 347 34.0
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 2.0e-23 114.0 334 35.0
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 3.4e-23 113.2 342 33.3
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 5.7e-23 112.5 369 32.2
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 5.7e-23 112.5 307 37.5
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 7.5e-23 112.1 350 31.7
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 9.8e-23 111.7 329 34.7
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.3e-22 111.3 343 33.8
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 1.7e-22 110.9 306 33.0
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.7e-22 110.9 304 34.9
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 3.7e-22 109.8 333 34.2
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 1.1e-21 108.2 317 32.8
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 1.8e-21 107.5 396 32.1
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 3.1e-21 106.7 328 32.6
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 5.4e-21 105.9 381 31.2
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 7.0e-21 105.5 347 33.1
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 9.1e-21 105.1 306 34.3
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 1.2e-20 104.8 335 33.1
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.6e-20 104.4 354 31.4
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 2.0e-20 104.0 365 31.2
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 2.7e-20 103.6 316 33.2
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 2.7e-20 103.6 341 32.6
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 3.5e-20 103.2 338 33.1
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 5.9e-20 102.4 380 30.3
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 7.7e-20 102.1 365 31.0
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.0e-19 101.7 334 32.6
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 1.0e-19 101.7 349 30.4
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 1.7e-19 100.9 308 34.7
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.7e-19 100.9 340 33.2
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 2.3e-19 100.5 363 31.4
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 5.0e-19 99.4 412 29.4
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 5.0e-19 99.4 351 30.8
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 6.5e-19 99.0 339 33.9
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 8.6e-19 98.6 311 31.5
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 8.6e-19 98.6 381 31.8
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 8.6e-19 98.6 357 29.7
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 8.6e-19 98.6 331 30.8
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 1.1e-18 98.2 383 30.8
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 1.1e-18 98.2 345 33.3
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.5e-18 97.8 349 30.7
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.5e-18 97.8 210 36.2
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 1.9e-18 97.4 361 29.9
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 2.5e-18 97.1 320 30.3
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 5.5e-18 95.9 306 32.7
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 7.2e-18 95.5 328 32.3
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 7.2e-18 95.5 347 31.4
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 9.5e-18 95.1 343 31.5
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 9.5e-18 95.1 345 30.4
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.6e-17 94.4 370 30.3
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.6e-17 94.4 340 31.2
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 2.8e-17 93.6 376 27.9
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 3.6e-17 93.2 374 30.7
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 6.1e-17 92.4 342 30.1
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 1.4e-16 91.3 351 31.1
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 6.8e-16 89.0 322 31.7
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 1.5e-15 87.8 365 29.6
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 1.5e-15 87.8 327 33.0
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 2.0e-15 87.4 344 31.1
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 3.4e-15 86.7 334 31.7
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 5.7e-15 85.9 327 29.1
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 4.9e-14 82.8 342 30.7
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 1.4e-13 81.3 283 31.4
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 7.0e-13 79.0 206 37.9
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 9.2e-13 78.6 432 26.2
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 9.2e-13 78.6 367 28.3
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 3.5e-12 76.6 419 27.9
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 5.9e-12 75.9 217 30.9
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.3e-11 74.7 305 30.5
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 1.1e-10 71.6 205 33.2
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.5e-10 71.2 129 39.5
Pp3c22_17340 Physcomitrium patens HOM05D006001 ORTHO05D006714 2.5e-10 70.5 258 31.8
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 3.3e-10 70.1 75 56.0
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 5.6e-10 69.3 89 42.7
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.6e-09 67.8 296 30.1
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 6.1e-09 65.9 90 41.1
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 8.0e-09 65.5 113 38.1
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 8.0e-09 65.5 133 36.1
EL10Ac1g00506 Beta vulgaris HOM05D034668 ORTHO05D006714 1.0e-08 65.1 392 26.0
Zm00001eb089620 Zea mays HOM05D034158 ORTHO05D037074 1.8e-08 64.3 335 29.0
DCAR_000919 Daucus carota HOM05D006001 ORTHO05D006714 3.0e-08 63.5 139 42.4
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 1.5e-07 61.2 258 30.2
CDE06G2035 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.0e-07 60.8 267 25.8
Zm00001eb418930 Zea mays HOM05D034158 ORTHO05D037074 2.0e-07 60.8 213 33.3
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.6e-07 60.5 162 32.1
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 2.6e-07 60.5 417 26.6
Lalb_Chr17g0344581 Lupinus albus HOM05D006001 ORTHO05D006714 3.4e-07 60.1 324 27.5
ATR0767G016 Amborella trichopoda HOM05D006001 ORTHO05D006714 5.7e-07 59.3 373 25.7
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 5.7e-07 59.3 76 44.7
Os02g0510300 Oryza sativa ssp. japonica HOM05D034158 ORTHO05D037074 7.5e-07 58.9 222 31.5
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.7e-06 57.8 216 32.4
RcHm_v2.0_Chr7g0235791 Rosa chinensis HOM05D006001 ORTHO05D006714 3.7e-06 56.6 203 32.0
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 3.7e-06 56.6 74 45.9
CAN.G475.17 Capsicum annuum HOM05D006001 ORTHO05D006714 4.9e-06 56.2 65 49.2
HanXRQChr13g0425001 Helianthus annuus HOM05D006001 ORTHO05D006714 4.9e-06 56.2 79 45.6
PSO144G0019 Papaver somniferum HOM05D006001 ORTHO05D006714 6.4e-06 55.8 164 29.9


User provided reference genes

Program Settings