Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold248G44913 Striga asiatica HOM05D000835 ORTHO05D002944 3.4e-89 331.6 167 100.0
Ah.08g222340 Amaranthus hybridus HOM05D000835 ORTHO05D007655 4.8e-19 98.6 76 65.8
SHI25283 Sapria himalayana HOM05D000835 ORTHO05D007655 6.3e-19 98.2 104 54.8
Lsat_1_v5_gn_8_25560 Lactuca sativa HOM05D000835 ORTHO05D007655 8.2e-19 97.8 80 60.0
Nitab4.5_0002426g0040 Nicotiana tabacum HOM05D000835 ORTHO05D007655 1.1e-18 97.4 101 51.5
Peaxi162Scf00259g00019 Petunia axillaris HOM05D000835 ORTHO05D007655 1.4e-18 97.1 101 52.5
AUR62001583 Chenopodium quinoa HOM05D000835 ORTHO05D007655 1.8e-18 96.7 76 63.2
AUR62020200 Chenopodium quinoa HOM05D000835 ORTHO05D007655 1.8e-18 96.7 76 63.2
Glyma.09G283700 Glycine max HOM05D000835 ORTHO05D007655 1.8e-18 96.7 99 53.5
Glyma.19G111600 Glycine max HOM05D000835 ORTHO05D007655 1.8e-18 96.7 99 53.5
PGR102G2314 Punica granatum HOM05D000835 ORTHO05D007655 1.8e-18 96.7 101 52.5
MSTRG.10400 Avicennia marina HOM05D000835 ORTHO05D007655 2.4e-18 96.3 70 67.1
AL3G37390 Arabidopsis lyrata HOM05D000835 ORTHO05D007655 3.1e-18 95.9 70 64.3
AT3G22980 Arabidopsis thaliana HOM05D000835 ORTHO05D007655 3.1e-18 95.9 70 64.3
CSS0030129 Camellia sinensis var. sinensis HOM05D000835 ORTHO05D007655 3.1e-18 95.9 70 65.7
Eucgr.B02912 Eucalyptus grandis HOM05D000835 ORTHO05D007655 3.1e-18 95.9 70 65.7
Nitab4.5_0002498g0060 Nicotiana tabacum HOM05D000835 ORTHO05D007655 3.1e-18 95.9 101 50.5
SalBow3G1027 Salvia bowleyana HOM05D000835 ORTHO05D007655 3.1e-18 95.9 105 52.4
SGA_v2.0_scaffold12G06248 Striga asiatica HOM05D000835 ORTHO05D007655 3.1e-18 95.9 70 67.1
Aa31LG8G9480 Aethionema arabicum HOM05D000835 ORTHO05D007655 4.1e-18 95.5 70 64.3
EL10Ac7g16262 Beta vulgaris HOM05D000835 ORTHO05D007655 4.1e-18 95.5 76 61.8
Migut.G00793 Erythranthe guttata HOM05D000835 ORTHO05D007655 4.1e-18 95.5 70 65.7
arahy.Tifrunner.gnm1.ann1.0BXH0B Arachis hypogaea HOM05D000835 ORTHO05D007655 5.3e-18 95.1 70 64.3
arahy.Tifrunner.gnm1.ann1.3FQW2E Arachis hypogaea HOM05D000835 ORTHO05D007655 5.3e-18 95.1 70 64.3
Carub.0003s2314 Capsella rubella HOM05D000835 ORTHO05D007655 5.3e-18 95.1 70 62.9
CiPaw.13G147400 Carya illinoinensis HOM05D000835 ORTHO05D007655 5.3e-18 95.1 100 52.0
Cc01_g07990 Coffea canephora HOM05D000835 ORTHO05D007655 5.3e-18 95.1 70 64.3
Gohir.A12G232600 Gossypium hirsutum HOM05D000835 ORTHO05D007655 5.3e-18 95.1 70 65.7
Gohir.D12G234800 Gossypium hirsutum HOM05D000835 ORTHO05D007655 5.3e-18 95.1 70 65.7
HanXRQChr08g0217071 Helianthus annuus HOM05D000835 ORTHO05D007655 5.3e-18 95.1 70 64.3
Solyc11g071770.1 Solanum lycopersicum HOM05D000835 ORTHO05D007655 5.3e-18 95.1 76 61.8
Sopen11g029440 Solanum pennellii HOM05D000835 ORTHO05D007655 5.3e-18 95.1 76 61.8
PGSC0003DMG400002992 Solanum tuberosum HOM05D000835 ORTHO05D007655 5.3e-18 95.1 76 61.8
DCAR_001041 Daucus carota HOM05D000835 ORTHO05D007655 7.0e-18 94.7 70 64.3
Duzib147G1214 Durio zibethinus HOM05D000835 ORTHO05D007655 7.0e-18 94.7 70 64.3
Lalb_Chr11g0073081 Lupinus albus HOM05D000835 ORTHO05D007655 7.0e-18 94.7 99 51.5
Manes.11G105000 Manihot esculenta HOM05D000835 ORTHO05D007655 7.0e-18 94.7 70 64.3
unitig_27.g25353 Utricularia gibba HOM05D000835 ORTHO05D007655 7.0e-18 94.7 70 64.3
VMungo0647G1181 Vigna mungo HOM05D000835 ORTHO05D007655 7.0e-18 94.7 99 53.5
CARHR098920 Cardamine hirsuta HOM05D000835 ORTHO05D007655 9.1e-18 94.4 70 61.4
Medtr4g119340 Medicago truncatula HOM05D000835 ORTHO05D007655 9.1e-18 94.4 99 51.5
Oeu051478.1 Olea europaea HOM05D000835 ORTHO05D007655 9.1e-18 94.4 131 44.3
Phvul.003G003900 Phaseolus vulgaris HOM05D000835 ORTHO05D007655 9.1e-18 94.4 99 52.5
Sabra09G0120400 Salix brachista HOM05D000835 ORTHO05D007655 9.1e-18 94.4 70 64.3
Sc11g0003980 Simmondsia chinensis HOM05D000835 ORTHO05D007655 9.1e-18 94.4 92 53.3
Dinv18870 Davidia involucrata HOM05D000835 ORTHO05D007655 1.2e-17 94.0 70 64.3
Psat4g027720 Pisum sativum HOM05D000835 ORTHO05D007655 1.2e-17 94.0 70 62.9
Potri.009G152500 Populus trichocarpa HOM05D000835 ORTHO05D007655 1.2e-17 94.0 70 64.3
TPR.G14630 Trifolium pratense HOM05D000835 ORTHO05D007655 1.2e-17 94.0 70 62.9
Ca_12421_v3 Cicer arietinum L. HOM05D000835 ORTHO05D007655 1.6e-17 93.6 70 62.9
ClCG09G010670 Citrullus lanatus HOM05D000835 ORTHO05D007655 1.6e-17 93.6 70 61.4
COL.COLO4_14020 Corchorus olitorius HOM05D000835 ORTHO05D007655 1.6e-17 93.6 70 62.9
CsaV3_7G021670 Cucumis sativus L. HOM05D000835 ORTHO05D007655 1.6e-17 93.6 70 61.4
Gorai.008G251100 Gossypium raimondii HOM05D000835 ORTHO05D007655 1.6e-17 93.6 69 65.2
Hma1.2p1_1811F.1_g303580 Hydrangea macrophylla HOM05D000835 ORTHO05D007655 1.6e-17 93.6 70 62.9
Thecc.01G127400 Theobroma cacao HOM05D000835 ORTHO05D007655 1.6e-17 93.6 69 65.2
CAN.G742.24 Capsicum annuum HOM05D000835 ORTHO05D007655 2.0e-17 93.2 90 54.4
Ciclev10030601m.g Citrus clementina HOM05D000835 ORTHO05D007655 2.0e-17 93.2 70 64.3
Haze_23278 Corylus avellana HOM05D000835 ORTHO05D007655 2.0e-17 93.2 70 64.3
MELO3C013183.2 Cucumis melo HOM05D000835 ORTHO05D007655 2.0e-17 93.2 70 61.4
Lj2A837G8 Lonicera japonica HOM05D000835 ORTHO05D007655 2.0e-17 93.2 70 64.3
Lj1g0017347 Lotus japonicus HOM05D000835 ORTHO05D007655 2.0e-17 93.2 70 62.9
Nn6g34584 Nelumbo nucifera HOM05D000835 ORTHO05D007655 2.0e-17 93.2 70 62.9
Rhsim08G0237400 Rhododendron simsii HOM05D000835 ORTHO05D007655 2.6e-17 92.8 69 63.8
Sed0018542 Sechium edule HOM05D000835 ORTHO05D007655 2.6e-17 92.8 70 60.0
ECA233G2238 Erigeron canadensis HOM05D000835 ORTHO05D007655 3.5e-17 92.4 70 61.4
Pp3c17_21830 Physcomitrium patens HOM05D000835 ORTHO05D007655 3.5e-17 92.4 69 62.3
GSVIVG01026440001 Vitis vinifera HOM05D000835 ORTHO05D007655 3.5e-17 92.4 69 62.3
Nn7g38301 Nelumbo nucifera HOM05D000835 ORTHO05D007655 4.5e-17 92.0 70 61.4
CANSAT54G0347 Cannabis sativa HOM05D000835 ORTHO05D007655 5.9e-17 91.7 69 60.9
HPP92_017079 Vanilla planifolia HOM05D000835 ORTHO05D007655 5.9e-17 91.7 70 62.9
Atru.chr6.1375 Acer truncatum HOM05D000835 ORTHO05D007655 7.7e-17 91.3 70 61.4
Dinv32150 Davidia involucrata HOM05D000835 ORTHO05D007655 7.7e-17 91.3 70 61.4
Thhalv10019976m.g Eutrema salsugineum HOM05D000835 ORTHO05D007655 7.7e-17 91.3 70 60.0
Cfa009920 Carpinus fangiana HOM05D000835 ORTHO05D007655 1.0e-16 90.9 70 62.9
Prupe.4G129900 Prunus persica HOM05D000835 ORTHO05D007655 1.0e-16 90.9 68 63.2
Aqoxy2G02907 Aquilegia oxysepala HOM05D000835 ORTHO05D007655 1.3e-16 90.5 70 60.0
TWI53G1197 Tripterygium wilfordii HOM05D000835 ORTHO05D007655 1.3e-16 90.5 69 62.3
ATR0697G189 Amborella trichopoda HOM05D000835 ORTHO05D007655 1.7e-16 90.1 70 60.0
BcaB06g26420 Brassica carinata HOM05D000835 ORTHO05D007655 2.9e-16 89.4 70 57.1
Mapoly0095s0055 Marchantia polymorpha HOM05D000835 ORTHO05D007655 2.9e-16 89.4 70 60.0
SEGI_39423 Sequoiadendron giganteum HOM05D000835 ORTHO05D007655 3.8e-16 89.0 70 60.0
TAR374G1323 Trochodendron aralioides HOM05D000835 ORTHO05D007655 3.8e-16 89.0 70 58.6
A01p21380 Brassica napus HOM05D000835 ORTHO05D007655 5.0e-16 88.6 70 57.1
BraA01t02043Z Brassica rapa HOM05D000835 ORTHO05D007655 5.0e-16 88.6 70 57.1
BcaC05g27990 Brassica carinata HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 57.1
C05p40010 Brassica napus HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 57.1
BolC5t32747H Brassica oleracea HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 57.1
FvH4_3g14510 Fragaria vesca HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 58.6
FAN11G2664 Fragaria x ananassa HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 58.6
FAN16G0727 Fragaria x ananassa HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 58.6
FAN21G3290 Fragaria x ananassa HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 58.6
FAN25G3716 Fragaria x ananassa HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 58.6
QL01p016405 Quercus lobata HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 61.4
RcHm_v2.0_Chr6g0274771 Rosa chinensis HOM05D000835 ORTHO05D007655 6.5e-16 88.2 70 58.6
A05p25720 Brassica napus HOM05D000835 ORTHO05D007655 1.1e-15 87.4 70 57.1
BraA05t21453Z Brassica rapa HOM05D000835 ORTHO05D007655 1.1e-15 87.4 70 57.1
MCO13G577 Micromonas commoda HOM05D000835 ORTHO05D007655 1.9e-15 86.7 70 58.6
Sp3g20670 Schrenkiella parvula HOM05D000835 ORTHO05D007655 2.5e-15 86.3 70 58.6
AagrBONN_evm.TU.Sc2ySwM_362.224 Anthoceros agrestis HOM05D000835 ORTHO05D007655 3.2e-15 85.9 69 59.4
CDE07G0289 Ceratophyllum demersum HOM05D000835 ORTHO05D007655 3.2e-15 85.9 70 57.1
Zm00001eb052970 Zea mays HOM05D000835 ORTHO05D007655 3.2e-15 85.9 69 60.9
SMO367G1260 Selaginella moellendorffii HOM05D000835 ORTHO05D007655 5.5e-15 85.1 87 52.9
Os03g0650700 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D007655 7.2e-15 84.7 69 62.3
PSO210G1464 Papaver somniferum HOM05D000835 ORTHO05D007655 7.2e-15 84.7 68 63.2
PSO238G0019 Papaver somniferum HOM05D000835 ORTHO05D007655 7.2e-15 84.7 68 63.2
MD10G1213300 Malus domestica HOM05D000835 ORTHO05D007655 1.6e-14 83.6 68 60.3
Os02g0543300 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D007655 1.6e-14 83.6 76 53.9
unitig_28.g29436 Utricularia gibba HOM05D000835 ORTHO05D007655 1.6e-14 83.6 79 55.7
CBR_g53556 Chara braunii HOM05D000835 ORTHO05D007655 2.7e-14 82.8 70 52.9
Ca_13611_v3 Cicer arietinum L. HOM05D000835 ORTHO05D007655 4.7e-14 82.0 117 40.2
PSO801G0441 Papaver somniferum HOM05D000835 ORTHO05D007655 6.1e-14 81.6 68 60.3
Cre13.g564950 Chlamydomonas reinhardtii HOM05D000835 ORTHO05D007655 1.0e-13 80.9 70 55.7
Actinidia03880 Actinidia chinensis HOM05D000835 ORTHO05D038046 1.4e-13 80.5 77 55.8
Actinidia03989 Actinidia chinensis HOM05D000835 ORTHO05D038046 1.4e-13 80.5 77 55.8
MBI04_g45345_MAGBIO Magnolia biondii HOM05D000835 ORTHO05D007655 5.2e-13 78.6 70 58.6
FvH4_4g04800 Fragaria vesca HOM05D000835 ORTHO05D007655 1.7e-11 73.6 56 64.3
SMO361G0467 Selaginella moellendorffii HOM05D000835 ORTHO05D007655 2.8e-11 72.8 70 50.0
FAN12G0217 Fragaria x ananassa HOM05D000835 ORTHO05D007655 3.1e-10 69.3 56 62.5
PRCOL_00005628 Prasinoderma coloniale HOM05D000835 ORTHO05D007655 3.1e-10 69.3 56 60.7
Cpa.g.sc103.46 Carica papaya HOM05D000835 ORTHO05D007655 2.7e-09 66.2 38 78.9
Cpa.g.sc103.45 Carica papaya HOM05D000835 ORTHO05D007655 6.5e-08 61.6 33 93.9
SGA_v2.0_scaffold73G24197 Striga asiatica HOM05D008023 ORTHO05D002944 8.5e-08 61.2 38 73.7
Actinidia12903 Actinidia chinensis HOM05D000835 ORTHO05D007655 1.1e-07 60.8 33 90.9
PGR083G0454 Punica granatum HOM05D000835 ORTHO05D014291 1.5e-07 60.5 33 90.9
SMO364G0415 Selaginella moellendorffii HOM05D000835 ORTHO05D002122 1.9e-07 60.1 78 41.0
Lj2P836T6 Lonicera japonica HOM05D000835 ORTHO05D014291 4.2e-07 58.9 33 90.9
Cfa025935 Carpinus fangiana HOM05D000835 ORTHO05D007655 5.5e-07 58.5 85 36.5
Peaxi162Scf00073g00038 Petunia axillaris HOM05D000835 ORTHO05D002122 1.2e-06 57.4 79 43.0
Peaxi162Scf00073g00057 Petunia axillaris HOM05D000835 ORTHO05D002122 1.2e-06 57.4 79 43.0
Zm00001eb311640 Zea mays HOM05D000835 ORTHO05D002122 1.2e-06 57.4 73 41.1
ATR0763G253 Amborella trichopoda HOM05D000835 ORTHO05D002122 1.6e-06 57.0 79 41.8
COL.COLO4_08186 Corchorus olitorius HOM05D000835 ORTHO05D002122 1.6e-06 57.0 79 43.0
MCO12G218 Micromonas commoda HOM05D000835 ORTHO05D002122 1.6e-06 57.0 79 40.5
Haze_26539 Corylus avellana HOM05D000835 ORTHO05D002122 2.1e-06 56.6 65 47.7
TPR.G9739 Trifolium pratense HOM05D000835 ORTHO05D002122 2.1e-06 56.6 79 41.8
Os01g0742200 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D002122 2.7e-06 56.2 79 40.5
CDE01G0562 Ceratophyllum demersum HOM05D000835 ORTHO05D002122 3.6e-06 55.8 79 41.8
FvH4_4g04801 Fragaria vesca HOM05D000835 ORTHO05D014291 3.6e-06 55.8 33 81.8
Glyma.15G256900 Glycine max HOM05D000835 ORTHO05D002122 3.6e-06 55.8 79 39.2
Os02g0519900 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D002122 3.6e-06 55.8 79 41.8
Os04g0118400 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D002122 3.6e-06 55.8 79 41.8
CBR_g17567 Chara braunii HOM05D000835 ORTHO05D002122 4.7e-06 55.5 79 43.0
PRCOL_00000385 Prasinoderma coloniale HOM05D000835 ORTHO05D002122 6.1e-06 55.1 79 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3134 Anthoceros agrestis HOM05D000835 ORTHO05D002122 8.0e-06 54.7 79 40.5
AagrBONN_evm.TU.Sc2ySwM_117.3141 Anthoceros agrestis HOM05D000835 ORTHO05D002122 8.0e-06 54.7 79 40.5
CDE12G0479 Ceratophyllum demersum HOM05D000835 ORTHO05D002122 8.0e-06 54.7 79 41.8
Zm00001eb063810 Zea mays HOM05D000835 ORTHO05D002122 8.0e-06 54.7 79 40.5
Zm00001eb063840 Zea mays HOM05D000835 ORTHO05D002122 8.0e-06 54.7 79 40.5
Zm00001eb063860 Zea mays HOM05D000835 ORTHO05D002122 8.0e-06 54.7 79 40.5
Zm00001eb371200 Zea mays HOM05D000835 ORTHO05D002122 8.0e-06 54.7 79 40.5


User provided reference genes

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