Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold242G44255 Striga asiatica HOM05D001502 ORTHO05D002950 1.1e-80 303.1 140 100.0
SGA_v2.0_scaffold242G44258 Striga asiatica HOM05D006491 ORTHO05D008412 5.6e-21 104.8 55 90.9
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 9.0e-11 70.9 60 60.0
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 1.2e-10 70.5 59 61.0
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 1.5e-10 70.1 59 59.3
Glyma.01G220200 Glycine max HOM05D001502 ORTHO05D002950 2.0e-10 69.7 60 58.3
Glyma.11G023500 Glycine max HOM05D001502 ORTHO05D002950 2.0e-10 69.7 60 58.3
Phvul.002G157900 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 2.0e-10 69.7 60 58.3
Actinidia27383 Actinidia chinensis HOM05D001502 ORTHO05D002950 2.6e-10 69.3 60 58.3
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 3.4e-10 68.9 59 57.6
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 3.4e-10 68.9 59 57.6
VMungo1215G2558 Vigna mungo HOM05D001502 ORTHO05D002950 4.5e-10 68.6 60 56.7
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 5.9e-10 68.2 59 55.9
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 5.9e-10 68.2 59 59.3
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 5.9e-10 68.2 59 57.6
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 7.6e-10 67.8 60 56.7
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 7.6e-10 67.8 60 56.7
Medtr8g098290 Medicago truncatula HOM05D001502 ORTHO05D002950 7.6e-10 67.8 92 42.4
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 1.0e-09 67.4 59 57.6
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 1.0e-09 67.4 59 57.6
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 1.0e-09 67.4 59 57.6
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 1.3e-09 67.0 59 55.9
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 1.7e-09 66.6 60 56.7
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
BcaB05g23821 Brassica carinata HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 1.7e-09 66.6 60 56.7
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 1.7e-09 66.6 60 55.0
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 1.7e-09 66.6 59 55.9
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.2e-09 66.2 59 55.9
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 2.2e-09 66.2 59 55.9
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 2.2e-09 66.2 59 55.9
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 2.2e-09 66.2 59 55.9
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.2e-09 66.2 59 55.9
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.2e-09 66.2 59 55.9
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 2.2e-09 66.2 59 55.9
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 2.2e-09 66.2 59 55.9
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 2.9e-09 65.9 109 39.4
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.9e-09 65.9 60 55.0
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 2.9e-09 65.9 59 54.2
Lalb_Chr22g0359321 Lupinus albus HOM05D001502 ORTHO05D002950 2.9e-09 65.9 59 55.9
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 2.9e-09 65.9 59 54.2
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 2.9e-09 65.9 60 55.0
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 2.9e-09 65.9 60 55.0
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 54.2
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 54.2
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 55.9
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 55.9
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 55.9
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 57.6
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 54.2
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 54.2
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 54.2
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 3.8e-09 65.5 59 54.2
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Glyma.01G220100 Glycine max HOM05D001502 ORTHO05D002950 5.0e-09 65.1 60 55.0
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 55.9
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Potri.001G104300 Populus trichocarpa HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Sed0021720 Sechium edule HOM05D001502 ORTHO05D002950 5.0e-09 65.1 59 54.2
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
Mapoly0111s0032 Marchantia polymorpha HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 55.9
Medtr5g010190 Medicago truncatula HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
Psat2g182400 Pisum sativum HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
THA.LOC104814493 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
TPR.G16303 Trifolium pratense HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
TPR.G6654 Trifolium pratense HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 6.5e-09 64.7 59 54.2
BcaC03g16347 Brassica carinata HOM05D001502 ORTHO05D002950 8.5e-09 64.3 59 54.2
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 8.5e-09 64.3 59 54.2
BraA02t07622Z Brassica rapa HOM05D001502 ORTHO05D002950 1.1e-08 63.9 59 54.2
Cpa.g.sc74.47 Carica papaya HOM05D001502 ORTHO05D002950 1.1e-08 63.9 59 54.2
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 1.1e-08 63.9 59 52.5
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 1.1e-08 63.9 60 53.3
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 1.1e-08 63.9 59 54.2
Glyma.19G131300 Glycine max HOM05D001502 ORTHO05D002950 1.1e-08 63.9 60 55.0
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 1.1e-08 63.9 59 54.2
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 1.1e-08 63.9 59 52.5
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 1.1e-08 63.9 59 52.5
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 1.4e-08 63.5 59 52.5
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 1.4e-08 63.5 59 52.5
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.4e-08 63.5 59 52.5
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.4e-08 63.5 59 54.2
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.4e-08 63.5 59 54.2
VMungo1215G0918 Vigna mungo HOM05D001502 ORTHO05D002950 1.4e-08 63.5 59 54.2
BcaB01g01539 Brassica carinata HOM05D001502 ORTHO05D002950 1.9e-08 63.2 59 50.8
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.9e-08 63.2 59 52.5
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 1.9e-08 63.2 59 54.2
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 1.9e-08 63.2 59 52.5
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 1.9e-08 63.2 59 52.5
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 2.5e-08 62.8 59 50.8
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.5e-08 62.8 59 52.5
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.5e-08 62.8 59 52.5
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.5e-08 62.8 59 52.5
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 2.5e-08 62.8 59 50.8
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 3.2e-08 62.4 59 52.5
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 3.2e-08 62.4 59 52.5
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 3.2e-08 62.4 59 52.5
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 3.2e-08 62.4 59 52.5
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 3.2e-08 62.4 59 52.5
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 3.2e-08 62.4 60 50.0
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 4.2e-08 62.0 59 57.6
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 4.2e-08 62.0 59 52.5
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 4.2e-08 62.0 61 49.2
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 4.2e-08 62.0 59 52.5
SMO353G0270 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 4.2e-08 62.0 59 52.5
SMO364G0341 Selaginella moellendorffii HOM05D001502 ORTHO05D002950 4.2e-08 62.0 59 52.5
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 4.2e-08 62.0 59 50.8
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 5.5e-08 61.6 59 52.5
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 5.5e-08 61.6 60 51.7
Phvul.002G157800 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 5.5e-08 61.6 59 52.5
TPR.G12968 Trifolium pratense HOM05D001502 ORTHO05D002950 5.5e-08 61.6 59 50.8
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 7.2e-08 61.2 60 50.0
Solyc08g081050.4 Solanum lycopersicum HOM05D001502 ORTHO05D002950 7.2e-08 61.2 59 54.2
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 7.2e-08 61.2 59 54.2
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 9.3e-08 60.8 59 50.8
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 9.3e-08 60.8 59 54.2
VMungo1215G0294 Vigna mungo HOM05D001502 ORTHO05D002950 1.2e-07 60.5 60 53.3
BraA09t38408Z Brassica rapa HOM05D001502 ORTHO05D002950 1.6e-07 60.1 59 49.2
BcaC04g21076 Brassica carinata HOM05D001502 ORTHO05D002950 2.1e-07 59.7 59 47.5
BcaC04g21078 Brassica carinata HOM05D001502 ORTHO05D002950 2.1e-07 59.7 59 47.5
BolC9t56433H Brassica oleracea HOM05D001502 ORTHO05D002950 2.1e-07 59.7 59 47.5
BolC9t56434H Brassica oleracea HOM05D001502 ORTHO05D002950 2.1e-07 59.7 59 47.5
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.1e-07 59.7 59 49.2
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 2.1e-07 59.7 59 49.2
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.1e-07 59.7 59 50.8
SEGI_03884 Sequoiadendron giganteum HOM05D001502 ORTHO05D002950 2.1e-07 59.7 59 52.5
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 2.7e-07 59.3 59 52.5
BcaC03g14142 Brassica carinata HOM05D001502 ORTHO05D002950 3.6e-07 58.9 59 47.5
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 3.6e-07 58.9 59 50.8
MBI18_g25520_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 3.6e-07 58.9 59 49.2
Pp3c1_20810 Physcomitrium patens HOM05D001502 ORTHO05D002950 3.6e-07 58.9 59 52.5
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 4.6e-07 58.5 59 45.8
arahy.Tifrunner.gnm1.ann1.HI8SJE Arachis hypogaea HOM05D001502 ORTHO05D002950 4.6e-07 58.5 59 50.8
arahy.Tifrunner.gnm1.ann1.W3TBCC Arachis hypogaea HOM05D001502 ORTHO05D002950 4.6e-07 58.5 59 50.8
Pp3c14_3750 Physcomitrium patens HOM05D001502 ORTHO05D002950 6.1e-07 58.2 59 49.2
CBR_g52340 Chara braunii HOM05D001502 ORTHO05D002950 7.9e-07 57.8 59 49.2
Potri.003G127300 Populus trichocarpa HOM05D001502 ORTHO05D002950 1.0e-06 57.4 61 50.8
Sabra03G0090200 Salix brachista HOM05D001502 ORTHO05D002950 1.0e-06 57.4 61 50.8
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 1.0e-06 57.4 58 46.6
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 1.0e-06 57.4 59 49.2
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 1.3e-06 57.0 59 49.2
BolC2t07531H Brassica oleracea HOM05D001502 ORTHO05D002950 1.8e-06 56.6 59 45.8
Lalb_Chr09g0320971 Lupinus albus HOM05D001502 ORTHO05D002950 1.8e-06 56.6 59 45.8
SHI07143 Sapria himalayana HOM05D001502 ORTHO05D002950 1.8e-06 56.6 59 49.2
BcaB01g01657 Brassica carinata HOM05D001502 ORTHO05D002950 2.3e-06 56.2 59 45.8
BcaB01g01658 Brassica carinata HOM05D001502 ORTHO05D002950 2.3e-06 56.2 59 45.8
Thhalv10027137m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 2.3e-06 56.2 61 47.5
BcaB01g01516 Brassica carinata HOM05D001502 ORTHO05D002950 3.0e-06 55.8 59 45.8
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 3.0e-06 55.8 59 49.2
Medtr8g098260 Medicago truncatula HOM05D001502 ORTHO05D002950 3.0e-06 55.8 58 48.3
Zm00001eb341940 Zea mays HOM05D001502 ORTHO05D002950 5.1e-06 55.1 61 47.5
Cc06_g18970 Coffea canephora HOM05D001502 ORTHO05D002950 8.7e-06 54.3 60 48.3


User provided reference genes

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