Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold242G44254 Striga asiatica HOM05D001502 ORTHO05D002950 8.3e-70 266.9 136 100.0
SGA_v2.0_scaffold42G16088 Striga asiatica HOM05D001502 ORTHO05D002950 2.7e-44 182.2 138 76.1
SGA_v2.0_scaffold173G39192 Striga asiatica HOM05D001502 ORTHO05D002950 1.9e-34 149.4 185 53.0
SGA_v2.0_scaffold96G28937 Striga asiatica HOM05D001502 ORTHO05D002950 1.2e-28 130.2 185 46.5
unitig_88.g27614 Utricularia gibba HOM05D001502 ORTHO05D002950 4.5e-23 111.7 178 44.9
SalBow1G7558 Salvia bowleyana HOM05D001502 ORTHO05D002950 4.2e-21 105.1 187 39.0
MSTRG.25606 Avicennia marina HOM05D001502 ORTHO05D002950 1.1e-18 97.1 191 39.3
unitig_0.g2859 Utricularia gibba HOM05D001502 ORTHO05D002950 1.5e-18 96.7 180 41.7
Nitab4.5_0023620g0010 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.9e-18 96.3 199 39.2
Oeu019190.1 Olea europaea HOM05D001502 ORTHO05D002950 7.4e-18 94.4 199 35.7
Nitab4.5_0001615g0190 Nicotiana tabacum HOM05D001502 ORTHO05D002950 9.7e-18 94.0 199 37.7
Actinidia33752 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.3e-17 93.6 191 35.1
Nitab4.5_0001315g0080 Nicotiana tabacum HOM05D001502 ORTHO05D002950 1.3e-17 93.6 199 37.2
SGA_v2.0_scaffold6G03380 Striga asiatica HOM05D001502 ORTHO05D403056 1.7e-17 93.2 100 57.0
Nitab4.5_0010968g0020 Nicotiana tabacum HOM05D001502 ORTHO05D002950 2.2e-17 92.8 199 37.2
CSS0008990 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.8e-17 92.4 196 35.7
CSS0043015 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002950 2.8e-17 92.4 196 35.7
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 4.8e-17 91.7 189 34.9
Peaxi162Scf00119g00829 Petunia axillaris HOM05D001502 ORTHO05D002950 8.2e-17 90.9 200 36.5
MSTRG.13843 Avicennia marina HOM05D001502 ORTHO05D002950 1.1e-16 90.5 193 36.8
Hma1.2p1_0792F.1_g218570 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 1.8e-16 89.7 179 36.9
CAN.G1842.1 Capsicum annuum HOM05D001502 ORTHO05D002950 2.4e-16 89.4 200 38.0
Hma1.2p1_0896F.1_g234010 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 4.1e-16 88.6 199 33.2
SGA_v2.0_scaffold242G44258 Striga asiatica HOM05D006491 ORTHO05D008412 9.1e-16 87.4 61 77.0
Sopen08g029370 Solanum pennellii HOM05D001502 ORTHO05D002950 1.2e-15 87.0 200 36.5
CAN.G774.38 Capsicum annuum HOM05D001502 ORTHO05D002950 1.5e-15 86.7 200 36.0
Sc22g0005600 Simmondsia chinensis HOM05D001502 ORTHO05D002950 2.0e-15 86.3 193 34.2
Hma1.2p1_2966F.1_g330990 Hydrangea macrophylla HOM05D001502 ORTHO05D002950 2.6e-15 85.9 191 34.0
CAN.G774.33 Capsicum annuum HOM05D001502 ORTHO05D002950 3.4e-15 85.5 200 37.0
PGSC0003DMG400012341 Solanum tuberosum HOM05D001502 ORTHO05D002950 3.4e-15 85.5 200 35.5
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 7.7e-15 84.3 200 37.0
Lj2A192G36 Lonicera japonica HOM05D001502 ORTHO05D002950 7.7e-15 84.3 194 34.5
Sed0014228 Sechium edule HOM05D001502 ORTHO05D002950 7.7e-15 84.3 151 36.4
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 1.0e-14 84.0 200 32.0
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 2.2e-14 82.8 173 38.2
Eucgr.E00595 Eucalyptus grandis HOM05D001502 ORTHO05D002950 6.5e-14 81.3 185 34.1
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 6.5e-14 81.3 140 39.3
vmacro11332 Vaccinium macrocarpon HOM05D001502 ORTHO05D002950 8.5e-14 80.9 198 32.3
Cpa.g.sc74.47 Carica papaya HOM05D001502 ORTHO05D002950 2.5e-13 79.3 192 32.8
CAN.G774.34 Capsicum annuum HOM05D001502 ORTHO05D002950 5.5e-13 78.2 200 37.0
DCAR_000610 Daucus carota HOM05D001502 ORTHO05D002950 5.5e-13 78.2 198 30.8
Duzib205G1526 Durio zibethinus HOM05D001502 ORTHO05D002950 5.5e-13 78.2 201 30.8
Migut.E01091 Erythranthe guttata HOM05D001502 ORTHO05D002950 7.2e-13 77.8 140 35.0
Ciclev10019291m.g Citrus clementina HOM05D001502 ORTHO05D002950 1.6e-12 76.6 199 30.7
Duzib068G0032 Durio zibethinus HOM05D001502 ORTHO05D002950 1.6e-12 76.6 131 36.6
Thecc.03G278600 Theobroma cacao HOM05D001502 ORTHO05D002950 1.6e-12 76.6 163 33.1
EL10Ac5g13060 Beta vulgaris HOM05D001502 ORTHO05D002950 2.7e-12 75.9 187 28.9
ClCG01G002730 Citrullus lanatus HOM05D001502 ORTHO05D002950 2.7e-12 75.9 128 39.8
Gohir.A08G182600 Gossypium hirsutum HOM05D001502 ORTHO05D002950 2.7e-12 75.9 186 30.6
Gohir.D08G201100 Gossypium hirsutum HOM05D001502 ORTHO05D002950 3.6e-12 75.5 186 30.6
Gorai.004G212000 Gossypium raimondii HOM05D001502 ORTHO05D002950 3.6e-12 75.5 186 30.6
Manes.01G061900 Manihot esculenta HOM05D001502 ORTHO05D002950 3.6e-12 75.5 197 30.5
TAR375G0676 Trochodendron aralioides HOM05D001502 ORTHO05D002950 3.6e-12 75.5 141 36.2
TAR629G2340 Trochodendron aralioides HOM05D001502 ORTHO05D002950 3.6e-12 75.5 128 38.3
Gohir.A11G022300 Gossypium hirsutum HOM05D001502 ORTHO05D002950 4.7e-12 75.1 130 36.9
Gohir.D11G022000 Gossypium hirsutum HOM05D001502 ORTHO05D002950 4.7e-12 75.1 130 36.9
Gorai.007G023400 Gossypium raimondii HOM05D001502 ORTHO05D002950 4.7e-12 75.1 130 36.9
Nn6g33451 Nelumbo nucifera HOM05D001502 ORTHO05D002950 7.9e-12 74.3 200 31.0
SGA_v2.0_scaffold479G52245 Striga asiatica HOM05D001502 ORTHO05D002950 7.9e-12 74.3 181 33.1
CiPaw.12G093300 Carya illinoinensis HOM05D001502 ORTHO05D002950 1.0e-11 73.9 197 30.5
CANSAT21G0813 Cannabis sativa HOM05D001502 ORTHO05D002950 1.4e-11 73.6 200 30.0
MELO3C005675.2 Cucumis melo HOM05D001502 ORTHO05D002950 1.4e-11 73.6 128 39.8
CsaV3_5G002820 Cucumis sativus L. HOM05D001502 ORTHO05D002950 1.4e-11 73.6 128 39.8
Sabra01G0078700 Salix brachista HOM05D001502 ORTHO05D002950 1.4e-11 73.6 202 30.7
Manes.02G022300 Manihot esculenta HOM05D001502 ORTHO05D002950 2.3e-11 72.8 190 30.0
Potri.001G104300 Populus trichocarpa HOM05D001502 ORTHO05D002950 2.3e-11 72.8 202 29.2
Hund11470 Selenicereus undatus HOM05D001502 ORTHO05D002950 2.3e-11 72.8 189 30.2
Solyc08g081050.4 Solanum lycopersicum HOM05D001502 ORTHO05D002950 3.0e-11 72.4 136 37.5
Ah.12g056920 Amaranthus hybridus HOM05D001502 ORTHO05D002950 3.9e-11 72.0 191 28.8
Actinidia02007 Actinidia chinensis HOM05D001502 ORTHO05D002950 5.1e-11 71.6 196 32.7
PGR042G2965 Punica granatum HOM05D001502 ORTHO05D002950 5.1e-11 71.6 182 31.3
PSO170G6703 Papaver somniferum HOM05D001502 ORTHO05D002950 6.7e-11 71.2 175 31.4
Lsat_1_v5_gn_6_6481 Lactuca sativa HOM05D001502 ORTHO05D002950 8.8e-11 70.9 175 32.6
Atru.chr9.2191 Acer truncatum HOM05D001502 ORTHO05D002950 1.1e-10 70.5 125 34.4
Actinidia27383 Actinidia chinensis HOM05D001502 ORTHO05D002950 1.1e-10 70.5 102 42.2
AUR62017203 Chenopodium quinoa HOM05D001502 ORTHO05D002950 1.5e-10 70.1 172 30.2
VMungo0251G3461 Vigna mungo HOM05D001502 ORTHO05D002950 1.5e-10 70.1 199 30.7
CDE08G1696 Ceratophyllum demersum HOM05D001502 ORTHO05D002950 2.0e-10 69.7 128 33.6
Aqoxy3G00056 Aquilegia oxysepala HOM05D001502 ORTHO05D002950 2.6e-10 69.3 162 30.9
MBI18_g46887_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 2.6e-10 69.3 158 33.5
Cfa012182 Carpinus fangiana HOM05D001502 ORTHO05D002950 3.3e-10 68.9 199 29.1
Potri.003G127400 Populus trichocarpa HOM05D001502 ORTHO05D002950 4.4e-10 68.6 130 38.5
THA.LOC104813019 Tarenaya hassleriana HOM05D001502 ORTHO05D002950 5.7e-10 68.2 130 36.2
AUR62010679 Chenopodium quinoa HOM05D001502 ORTHO05D002950 9.7e-10 67.4 172 30.2
SHI07143 Sapria himalayana HOM05D001502 ORTHO05D002950 9.7e-10 67.4 168 30.4
CiPaw.11G135500 Carya illinoinensis HOM05D001502 ORTHO05D002950 1.3e-09 67.0 195 31.3
Phvul.002G289400 Phaseolus vulgaris HOM05D001502 ORTHO05D002950 1.3e-09 67.0 199 28.6
Glyma.05G207800 Glycine max HOM05D001502 ORTHO05D002950 2.2e-09 66.2 199 28.6
MD06G1082900 Malus domestica HOM05D001502 ORTHO05D002950 2.2e-09 66.2 200 29.5
Sabra03G0090400 Salix brachista HOM05D001502 ORTHO05D002950 2.8e-09 65.9 201 30.8
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 3.7e-09 65.5 195 28.7
Glyma.08G014500 Glycine max HOM05D001502 ORTHO05D002950 3.7e-09 65.5 199 29.1
arahy.Tifrunner.gnm1.ann1.T4KI49 Arachis hypogaea HOM05D001502 ORTHO05D002950 4.8e-09 65.1 200 30.5
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 6.3e-09 64.7 195 28.7
HPP92_025727 Vanilla planifolia HOM05D001502 ORTHO05D002950 8.2e-09 64.3 188 29.8
arahy.Tifrunner.gnm1.ann1.RBC6WC Arachis hypogaea HOM05D001502 ORTHO05D002950 1.4e-08 63.5 200 30.0
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 1.8e-08 63.2 195 28.2
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 2.4e-08 62.8 196 28.1
HanXRQChr07g0187221 Helianthus annuus HOM05D001502 ORTHO05D002950 3.1e-08 62.4 182 31.9
Prupe.5G100000 Prunus persica HOM05D001502 ORTHO05D002950 3.1e-08 62.4 196 26.5
Ca_17534_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 4.1e-08 62.0 199 27.6
Glyma.11G023500 Glycine max HOM05D001502 ORTHO05D002950 4.1e-08 62.0 200 28.5
HanXRQChr07g0189841 Helianthus annuus HOM05D001502 ORTHO05D002950 4.1e-08 62.0 191 25.1
Carub.0006s3060 Capsella rubella HOM05D001502 ORTHO05D002950 9.1e-08 60.8 189 27.5
FvH4_5g02390 Fragaria vesca HOM05D001502 ORTHO05D002950 9.1e-08 60.8 195 27.7
ECA233G0801 Erigeron canadensis HOM05D001502 ORTHO05D002950 1.2e-07 60.5 188 26.6
Lj4g0001385 Lotus japonicus HOM05D001502 ORTHO05D002950 1.2e-07 60.5 127 33.1
Ciclev10003744m.g Citrus clementina HOM05D001502 ORTHO05D002950 2.0e-07 59.7 118 35.6
Psat7g033280 Pisum sativum HOM05D001502 ORTHO05D002950 2.0e-07 59.7 198 27.3
TWI60G1236 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 2.0e-07 59.7 128 32.0
TWI81G0062 Tripterygium wilfordii HOM05D001502 ORTHO05D002950 2.0e-07 59.7 128 32.0
ATR0680G298 Amborella trichopoda HOM05D001502 ORTHO05D002950 2.6e-07 59.3 127 36.2
MD14G1104300 Malus domestica HOM05D001502 ORTHO05D002950 2.6e-07 59.3 199 28.1
RcHm_v2.0_Chr7g0197721 Rosa chinensis HOM05D001502 ORTHO05D002950 2.6e-07 59.3 195 26.7
Sp6g05920 Schrenkiella parvula HOM05D001502 ORTHO05D002950 4.5e-07 58.5 127 32.3
AT4G11560 Arabidopsis thaliana HOM05D001502 ORTHO05D002950 5.9e-07 58.2 130 31.5
BcaC01g04626 Brassica carinata HOM05D001502 ORTHO05D002950 5.9e-07 58.2 179 26.8
Aa31LG9G10750 Aethionema arabicum HOM05D001502 ORTHO05D002950 7.7e-07 57.8 127 33.1
MBI18_g25520_MAGBIO Magnolia biondii HOM05D001502 ORTHO05D002950 1.0e-06 57.4 89 40.4
QL12p033043 Quercus lobata HOM05D001502 ORTHO05D002950 1.0e-06 57.4 233 26.2
AL6G46080 Arabidopsis lyrata HOM05D001502 ORTHO05D002950 1.3e-06 57.0 130 30.8
Thhalv10028529m.g Eutrema salsugineum HOM05D001502 ORTHO05D002950 1.3e-06 57.0 127 32.3
Migut.A00766 Erythranthe guttata HOM05D001502 ORTHO05D002950 1.7e-06 56.6 187 27.3
Lalb_Chr16g0389971 Lupinus albus HOM05D001502 ORTHO05D002950 1.7e-06 56.6 199 27.1
Ca_24551_v3 Cicer arietinum L. HOM05D001502 ORTHO05D002950 2.2e-06 56.2 129 32.6
Os01g0527400 Oryza sativa ssp. japonica HOM05D001502 ORTHO05D002950 2.2e-06 56.2 126 34.1
BolC3t15864H Brassica oleracea HOM05D001502 ORTHO05D002950 3.8e-06 55.5 179 26.3
LjContig00312_ERROPOS870357g0010973 Lotus japonicus HOM05D001502 ORTHO05D002950 3.8e-06 55.5 128 34.4
BcaB01g02692 Brassica carinata HOM05D001502 ORTHO05D002950 8.5e-06 54.3 127 31.5
CARHR254850 Cardamine hirsuta HOM05D001502 ORTHO05D002950 8.5e-06 54.3 127 30.7


User provided reference genes

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