Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold241G44212 Striga asiatica HOM05D003694 ORTHO05D004212 3.4e-167 592.0 412 100.0
PGR031G3896 Punica granatum HOM05D003694 ORTHO05D004212 1.2e-13 82.0 52 75.0
Ca_14108_v3 Cicer arietinum L. HOM05D001503 ORTHO05D003820 1.5e-13 81.6 41 92.7
Ca_14110_v3 Cicer arietinum L. HOM05D000660 ORTHO05D004212 1.5e-13 81.6 41 92.7
TWI53G1323 Tripterygium wilfordii HOM05D003694 ORTHO05D004212 3.4e-13 80.5 58 70.7
Peaxi162Scf00065g00118 Petunia axillaris HOM05D003694 ORTHO05D004212 4.4e-13 80.1 53 75.5
THA.LOC104827091 Tarenaya hassleriana HOM05D003694 ORTHO05D004212 4.4e-13 80.1 48 81.2
Cc03_g01040 Coffea canephora HOM05D003694 ORTHO05D004212 5.7e-13 79.7 52 75.0
PGR004G0176 Punica granatum HOM05D003694 ORTHO05D004212 5.7e-13 79.7 42 85.7
Actinidia40358 Actinidia chinensis HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 87.8
Ca_21453_v3 Cicer arietinum L. HOM05D001503 ORTHO05D003820 7.5e-13 79.3 41 90.2
COL.COLO4_23243 Corchorus olitorius HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
COL.COLO4_34653 Corchorus olitorius HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Duzib052G0415 Durio zibethinus HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Duzib151G1193 Durio zibethinus HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Glyma.07G241700 Glycine max HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Glyma.09G038100 Glycine max HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Glyma.15G143232 Glycine max HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Glyma.17G032200 Glycine max HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Gohir.A09G235500 Gossypium hirsutum HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Gohir.A10G170900 Gossypium hirsutum HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Gohir.D09G236300 Gossypium hirsutum HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Gohir.D10G178000 Gossypium hirsutum HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Gorai.001G178400 Gossypium raimondii HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Gorai.006G259400 Gossypium raimondii HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Lj4g0004117 Lotus japonicus HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Lalb_Chr07g0182121 Lupinus albus HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Lalb_Chr12g0200931 Lupinus albus HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Lalb_Chr13g0298361 Lupinus albus HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Manes.03G202400 Manihot esculenta HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Medtr4g121877 Medicago truncatula HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Peaxi162Scf00164g01139 Petunia axillaris HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 87.8
Phvul.003G112200 Phaseolus vulgaris HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Phvul.009G254800 Phaseolus vulgaris HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Psat0s5290g0080 Pisum sativum HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Psat4g023480 Pisum sativum HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Thecc.01G312100 Theobroma cacao HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Thecc.04G297000 Theobroma cacao HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
TWI09G1460 Tripterygium wilfordii HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
TWI73G0909 Tripterygium wilfordii HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
unitig_22.g6341 Utricularia gibba HOM05D003694 ORTHO05D004212 7.5e-13 79.3 41 90.2
Medtr4g121870 Medicago truncatula HOM05D003694 ORTHO05D004212 9.8e-13 79.0 52 76.9
Aa31LG11G7970 Aethionema arabicum HOM05D003694 ORTHO05D004212 1.3e-12 78.6 41 90.2
Aa31LG5G17290 Aethionema arabicum HOM05D003694 ORTHO05D004212 1.3e-12 78.6 41 90.2
Duzib138G1846 Durio zibethinus HOM05D003694 ORTHO05D004212 1.3e-12 78.6 41 90.2
arahy.Tifrunner.gnm1.ann1.GSMV4A Arachis hypogaea HOM05D003694 ORTHO05D004212 1.7e-12 78.2 41 87.8
arahy.Tifrunner.gnm1.ann1.Y758W9 Arachis hypogaea HOM05D003694 ORTHO05D004212 1.7e-12 78.2 41 87.8
MELO3C021278.2 Cucumis melo HOM05D003694 ORTHO05D004212 1.7e-12 78.2 41 85.4
Gorai.001G213200 Gossypium raimondii HOM05D003694 ORTHO05D004212 1.7e-12 78.2 41 90.2
Manes.15G005802 Manihot esculenta HOM05D003694 ORTHO05D004212 1.7e-12 78.2 41 87.8
Hund11958 Selenicereus undatus HOM05D003694 ORTHO05D004212 1.7e-12 78.2 49 79.6
MD16G1157600 Malus domestica HOM05D003694 ORTHO05D004212 2.2e-12 77.8 52 75.0
Potri.008G107700 Populus trichocarpa HOM05D003694 ORTHO05D004212 2.2e-12 77.8 41 90.2
Hund03109 Selenicereus undatus HOM05D003694 ORTHO05D004212 2.2e-12 77.8 41 87.8
TAR365G0516 Trochodendron aralioides HOM05D003694 ORTHO05D004212 2.2e-12 77.8 42 83.3
TAR636G2409 Trochodendron aralioides HOM05D003694 ORTHO05D004212 2.2e-12 77.8 41 85.4
Duzib212G0047 Durio zibethinus HOM05D003694 ORTHO05D004212 2.8e-12 77.4 41 87.8
Actinidia15591 Actinidia chinensis HOM05D000660 ORTHO05D004212 3.7e-12 77.0 41 85.4
CSS0029801 Camellia sinensis var. sinensis HOM05D003694 ORTHO05D004212 3.7e-12 77.0 41 85.4
Cpa.g.sc18.31 Carica papaya HOM05D003694 ORTHO05D004212 3.7e-12 77.0 41 85.4
Cfa015342 Carpinus fangiana HOM05D003694 ORTHO05D004212 3.7e-12 77.0 41 85.4
Haze_01270 Corylus avellana HOM05D003694 ORTHO05D004212 3.7e-12 77.0 41 85.4
Nn4g25621 Nelumbo nucifera HOM05D003694 ORTHO05D004212 3.7e-12 77.0 52 75.0
THA.LOC104810208 Tarenaya hassleriana HOM05D003694 ORTHO05D004212 3.7e-12 77.0 41 87.8
GSVIVG01028108001 Vitis vinifera HOM05D003694 ORTHO05D004212 3.7e-12 77.0 41 85.4
Atru.chr5.1018 Acer truncatum HOM05D003694 ORTHO05D004212 4.8e-12 76.6 41 85.4
Ciclev10006499m.g Citrus clementina HOM05D003694 ORTHO05D004212 4.8e-12 76.6 41 85.4
Ciclev10023233m.g Citrus clementina HOM05D003694 ORTHO05D004212 4.8e-12 76.6 39 89.7
Oeu036981.1 Olea europaea HOM05D003694 ORTHO05D004212 4.8e-12 76.6 41 85.4
Cpa.g.sc929.3 Carica papaya HOM05D003694 ORTHO05D004212 6.3e-12 76.3 41 85.4
Gohir.D02G058400 Gossypium hirsutum HOM05D003694 ORTHO05D004212 6.3e-12 76.3 41 87.8
Gorai.005G066000 Gossypium raimondii HOM05D003694 ORTHO05D004212 6.3e-12 76.3 41 87.8
Potri.010G142001 Populus trichocarpa HOM05D003694 ORTHO05D004212 6.3e-12 76.3 41 87.8
Sabra08G0081400 Salix brachista HOM05D003694 ORTHO05D004212 6.3e-12 76.3 41 87.8
ClCG06G004680 Citrullus lanatus HOM05D003694 ORTHO05D004212 8.3e-12 75.9 41 85.4
MELO3C021277.2 Cucumis melo HOM05D003694 ORTHO05D004212 8.3e-12 75.9 41 82.9
EL10Ac3g05459 Beta vulgaris HOM05D003694 ORTHO05D004212 1.1e-11 75.5 41 85.4
CSS0032275 Camellia sinensis var. sinensis HOM05D003694 ORTHO05D004212 1.1e-11 75.5 41 82.9
CANSAT78G1544 Cannabis sativa HOM05D003694 ORTHO05D004212 1.1e-11 75.5 45 80.0
MBI19_g19943_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 1.1e-11 75.5 39 87.2
Nitab4.5_0000647g0070 Nicotiana tabacum HOM05D003694 ORTHO05D004212 1.1e-11 75.5 42 78.6
Nitab4.5_0006365g0080 Nicotiana tabacum HOM05D003694 ORTHO05D004212 1.1e-11 75.5 52 69.2
Rhsim02G0005300 Rhododendron simsii HOM05D003694 ORTHO05D004212 1.1e-11 75.5 41 82.9
THA.LOC104802199 Tarenaya hassleriana HOM05D003694 ORTHO05D004212 1.1e-11 75.5 40 87.5
CARHR081280 Cardamine hirsuta HOM05D003694 ORTHO05D004212 1.4e-11 75.1 41 87.8
CiPaw.01G140600 Carya illinoinensis HOM05D003694 ORTHO05D004212 1.4e-11 75.1 41 82.9
CiPaw.01G140700 Carya illinoinensis HOM05D003694 ORTHO05D004212 1.4e-11 75.1 41 82.9
Thhalv10015219m.g Eutrema salsugineum HOM05D003694 ORTHO05D004212 1.4e-11 75.1 41 87.8
Thhalv10021900m.g Eutrema salsugineum HOM05D003694 ORTHO05D004212 1.4e-11 75.1 45 82.2
Os01g0304000 Oryza sativa ssp. japonica HOM05D003694 ORTHO05D004212 1.4e-11 75.1 41 85.4
Os05g0355500 Oryza sativa ssp. japonica HOM05D003694 ORTHO05D004212 1.4e-11 75.1 41 85.4
Prupe.1G122500 Prunus persica HOM05D003694 ORTHO05D004212 1.4e-11 75.1 42 83.3
RcHm_v2.0_Chr4g0424471 Rosa chinensis HOM05D003694 ORTHO05D004212 1.4e-11 75.1 45 77.8
THA.LOC104802703 Tarenaya hassleriana HOM05D003694 ORTHO05D004212 1.4e-11 75.1 39 89.7
vmacro08066 Vaccinium macrocarpon HOM05D003694 ORTHO05D004212 1.4e-11 75.1 41 82.9
GSVIVG01035023001 Vitis vinifera HOM05D003694 ORTHO05D004212 1.4e-11 75.1 41 82.9
FvH4_4g19430 Fragaria vesca HOM05D003694 ORTHO05D004212 1.8e-11 74.7 46 78.3
FAN07G2697 Fragaria x ananassa HOM05D003694 ORTHO05D004212 1.8e-11 74.7 46 78.3
FAN12G2422 Fragaria x ananassa HOM05D003694 ORTHO05D004212 1.8e-11 74.7 46 78.3
FAN12G2986 Fragaria x ananassa HOM05D003694 ORTHO05D004212 1.8e-11 74.7 46 78.3
MBI18_g28442_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 1.8e-11 74.7 39 87.2
Oeu019965.1 Olea europaea HOM05D003694 ORTHO05D004212 1.8e-11 74.7 41 87.8
Sed0016103 Sechium edule HOM05D003694 ORTHO05D004212 1.8e-11 74.7 41 82.9
Sed0021312 Sechium edule HOM05D003694 ORTHO05D004212 1.8e-11 74.7 41 82.9
Sc25g0003420 Simmondsia chinensis HOM05D003694 ORTHO05D004212 1.8e-11 74.7 41 82.9
CsaV3_6G022450 Cucumis sativus L. HOM05D003694 ORTHO05D004212 2.4e-11 74.3 41 82.9
HanXRQChr01g0029911 Helianthus annuus HOM05D003694 ORTHO05D004212 2.4e-11 74.3 41 80.5
HanXRQChr02g0048451 Helianthus annuus HOM05D003694 ORTHO05D004212 2.4e-11 74.3 41 80.5
HanXRQChr05g0148201 Helianthus annuus HOM05D003694 ORTHO05D004212 2.4e-11 74.3 41 80.5
Lj2g0007679 Lotus japonicus HOM05D003694 ORTHO05D004212 2.4e-11 74.3 41 85.4
PGSC0003DMG400027161 Solanum tuberosum HOM05D003694 ORTHO05D004212 2.4e-11 74.3 41 82.9
Carub.0003s0623 Capsella rubella HOM05D003694 ORTHO05D004212 3.1e-11 73.9 41 87.8
Carub.0003s0624 Capsella rubella HOM05D003694 ORTHO05D004212 3.1e-11 73.9 41 87.8
CiPaw.07G028500 Carya illinoinensis HOM05D003694 ORTHO05D004212 3.1e-11 73.9 41 82.9
Migut.N00051 Erythranthe guttata HOM05D003694 ORTHO05D004212 3.1e-11 73.9 41 85.4
Gohir.A02G053700 Gossypium hirsutum HOM05D003694 ORTHO05D004212 3.1e-11 73.9 41 85.4
Sed0020513 Sechium edule HOM05D003694 ORTHO05D004212 3.1e-11 73.9 41 82.9
ATR0234G001 Amborella trichopoda HOM05D003694 ORTHO05D004212 4.1e-11 73.6 39 87.2
ATR0693G015 Amborella trichopoda HOM05D003694 ORTHO05D004212 4.1e-11 73.6 39 87.2
Cfa006691 Carpinus fangiana HOM05D003694 ORTHO05D004212 4.1e-11 73.6 41 80.5
Hma1.2p1_0013F.1_g008790 Hydrangea macrophylla HOM05D003694 ORTHO05D004212 4.1e-11 73.6 41 82.9
Hma1.2p1_0078F.1_g040050 Hydrangea macrophylla HOM05D003694 ORTHO05D004212 4.1e-11 73.6 41 82.9
MBI15_g30386_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 4.1e-11 73.6 71 56.3
Nitab4.5_0001305g0040 Nicotiana tabacum HOM05D003694 ORTHO05D004212 4.1e-11 73.6 42 78.6
Oeu019958.1 Olea europaea HOM05D003694 ORTHO05D004212 4.1e-11 73.6 41 85.4
CARHR081290 Cardamine hirsuta HOM05D003694 ORTHO05D004212 5.4e-11 73.2 41 85.4
Aqoxy4G03098 Aquilegia oxysepala HOM05D003694 ORTHO05D004212 7.0e-11 72.8 52 73.1
Lsat_1_v5_gn_1_43921 Lactuca sativa HOM05D003694 ORTHO05D004212 9.1e-11 72.4 54 66.7
Lsat_1_v5_gn_6_114300 Lactuca sativa HOM05D003694 ORTHO05D004212 9.1e-11 72.4 41 80.5
AL3G17820 Arabidopsis lyrata HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
AL4G22460 Arabidopsis lyrata HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
AT3G06680 Arabidopsis thaliana HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
AT3G06700 Arabidopsis thaliana HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BcaC05g30552 Brassica carinata HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BcaC09g47914 Brassica carinata HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
A03p34810 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
A05p41320 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BNapus_Darmor_BZH_scaffold_117p00030 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
C05p60570 Brassica napus HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BolC1t05591H Brassica oleracea HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BolC3t16510H Brassica oleracea HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BolC5t34711H Brassica oleracea HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BraA01t04420Z Brassica rapa HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BraA03t12662Z Brassica rapa HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
BraA05t22855Z Brassica rapa HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
Gorai.010G100800 Gossypium raimondii HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 85.4
Sp3g05670 Schrenkiella parvula HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
Sp3g05680 Schrenkiella parvula HOM05D003694 ORTHO05D004212 1.2e-10 72.0 41 82.9
AL5G26500 Arabidopsis lyrata HOM05D003694 ORTHO05D004212 1.6e-10 71.6 39 84.6
C03p42400 Brassica napus HOM05D003694 ORTHO05D004212 1.6e-10 71.6 39 84.6
Migut.O00932 Erythranthe guttata HOM05D003694 ORTHO05D004212 2.0e-10 71.2 41 82.9
PSO170G6603 Papaver somniferum HOM05D003694 ORTHO05D004212 2.7e-10 70.9 47 76.6
PSO357G0113 Papaver somniferum HOM05D003694 ORTHO05D004212 2.7e-10 70.9 47 76.6
Potri.002G196800 Populus trichocarpa HOM05D003694 ORTHO05D004212 3.5e-10 70.5 39 82.1
Zm00001eb130220 Zea mays HOM05D003694 ORTHO05D004212 5.9e-10 69.7 41 82.9
SEGI_01247 Sequoiadendron giganteum HOM05D003694 ORTHO05D004212 1.0e-09 68.9 39 82.1
DCAR_027014 Daucus carota HOM05D003694 ORTHO05D004212 1.7e-09 68.2 41 78.0
DCAR_023339 Daucus carota HOM05D003694 ORTHO05D004212 2.2e-09 67.8 52 67.3
Pp3c10_8040 Physcomitrium patens HOM05D003694 ORTHO05D004212 2.2e-09 67.8 52 63.5
MBI06_g36538_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 6.5e-09 66.2 41 78.0
AagrBONN_evm.TU.Sc2ySwM_228.446 Anthoceros agrestis HOM05D003694 ORTHO05D004212 8.5e-09 65.9 39 76.9
Mapoly0065s0019 Marchantia polymorpha HOM05D003694 ORTHO05D004212 8.5e-09 65.9 39 76.9
SalBow5G1138 Salvia bowleyana HOM05D003694 ORTHO05D004212 8.5e-09 65.9 38 81.6
Pp3c14_7570 Physcomitrium patens HOM05D003694 ORTHO05D004212 1.1e-08 65.5 52 61.5
Pp3c1_34380 Physcomitrium patens HOM05D003694 ORTHO05D004212 2.5e-08 64.3 47 66.0
MBI15_g23976_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 1.2e-07 62.0 33 84.8
Rhsim04G0233800 Rhododendron simsii HOM05D003694 ORTHO05D004212 2.1e-07 61.2 58 56.9
SMO147G0013 Selaginella moellendorffii HOM05D003694 ORTHO05D004212 2.7e-07 60.8 37 78.4
PRCOL_00005190 Prasinoderma coloniale HOM05D003694 ORTHO05D004212 4.7e-07 60.1 39 69.2
CiPaw.13G143600 Carya illinoinensis HOM05D003694 ORTHO05D004212 6.1e-07 59.7 31 83.9
Sabra15G0036500 Salix brachista HOM05D003694 ORTHO05D004212 1.0e-06 58.9 31 87.1
Nitab4.5_0002848g0050 Nicotiana tabacum HOM05D003694 ORTHO05D004212 1.4e-06 58.5 32 78.1
Cre03.g207050 Chlamydomonas reinhardtii HOM05D003694 ORTHO05D004212 3.0e-06 57.4 41 63.4
Gohir.A06G030200 Gossypium hirsutum HOM05D003694 ORTHO05D004212 4.0e-06 57.0 31 83.9
Gohir.A13G032900 Gossypium hirsutum HOM05D003694 ORTHO05D004212 4.0e-06 57.0 31 83.9
Gohir.D06G087300 Gossypium hirsutum HOM05D003694 ORTHO05D004212 4.0e-06 57.0 31 83.9
Gohir.D06G111200 Gossypium hirsutum HOM05D003694 ORTHO05D004212 4.0e-06 57.0 31 83.9
MCO02G339 Micromonas commoda HOM05D003694 ORTHO05D004212 4.0e-06 57.0 37 70.3
SalBow5G3956 Salvia bowleyana HOM05D003694 ORTHO05D004212 4.0e-06 57.0 32 81.2


User provided reference genes

Program Settings