Gene: AT3G06680
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G06680
- Transcript Identifier AT3G06680.3
- Gene Type Coding gene
- Location Chr3 : 2114402-2114724 : negative
Gene Family Information
- ID HOM05D003694
- #Genes/#Species 186/82
- Phylogenetic origin
- ID ORTHO05D004212
- #Genes/#Species 187/83
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT3G06680.3
- uniprot Q84WM0
Descriptions
- Description Ribosomal L29e protein family
- Computational description Ribosomal L29e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: Ribosomal L29e protein family (TAIR:AT3G06700.3); Has 760 Blast hits to 760 proteins in 244 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 97; Plants - 113; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
- Computational description Ribosomal L29e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L29e (InterPro:IPR002673); BEST Arabidopsis thaliana protein match is: Ribosomal L29e protein family (TAIR:AT3G06700.3).
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Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006412 | IEA | Gene Ontology | translation | |
| GO:0006412 | IEA | InterPro | translation | |
| GO:0002181 | IBA | GOA Database | cytoplasmic translation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003735 | IBA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0022625 | IBA | GOA Database | cytosolic large ribosomal subunit | |
| GO:0022625 | HDA | Gene Ontology | cytosolic large ribosomal subunit | 1 |
| GO:0005840 | IEA | GOA Database | ribosome | |
| GO:0005840 | IEA | InterPro | ribosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002673 | Ribosomal protein L29e |
| Mapman id | Description |
|---|---|
| 17.1.2.1.30 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL29 |