Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.7e-138 495.4 259 100.0
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 8.3e-103 377.5 207 85.0
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 8.6e-100 367.5 263 69.2
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 3.3e-99 365.5 257 71.2
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 6.2e-98 361.3 253 71.5
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.8e-97 359.8 253 71.1
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 4.0e-97 358.6 254 69.7
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 6.8e-97 357.8 256 70.3
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.5e-96 356.7 263 69.6
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 1.5e-96 356.7 257 68.9
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 2.0e-96 356.3 247 72.1
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 2.6e-96 355.9 253 71.1
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 3.4e-96 355.5 263 69.2
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 3.4e-96 355.5 263 69.2
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 5.8e-96 354.8 245 72.2
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.8e-96 354.8 257 68.9
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.8e-96 354.8 257 68.9
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 7.6e-96 354.4 266 68.0
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 7.6e-96 354.4 258 68.2
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.3e-95 353.6 269 67.3
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.3e-95 353.6 251 70.1
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.7e-95 353.2 252 71.0
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.7e-95 353.2 254 68.9
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 2.2e-95 352.8 262 69.5
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 2.2e-95 352.8 250 70.4
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.9e-95 352.4 257 68.5
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 3.8e-95 352.1 274 66.1
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 3.8e-95 352.1 287 63.4
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 4.9e-95 351.7 244 71.7
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 4.9e-95 351.7 243 72.0
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 6.4e-95 351.3 273 65.2
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 8.4e-95 350.9 253 68.4
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.1e-94 350.5 257 68.5
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 1.4e-94 350.1 282 64.2
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.4e-94 350.1 288 62.8
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.4e-94 350.1 282 64.2
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.4e-94 350.1 282 64.2
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.9e-94 349.7 249 71.1
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 1.9e-94 349.7 254 68.9
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 2.4e-94 349.4 266 66.2
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 3.2e-94 349.0 266 67.7
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 4.2e-94 348.6 199 81.4
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 9.2e-94 347.4 271 67.2
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 9.2e-94 347.4 202 81.2
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.2e-93 347.1 252 69.4
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.6e-93 346.7 269 65.8
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 4.6e-93 345.1 253 67.2
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 6.0e-93 344.7 199 82.4
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 6.0e-93 344.7 267 66.7
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 7.8e-93 344.4 265 66.8
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 1.0e-92 344.0 268 66.0
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.3e-92 343.6 254 69.3
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 1.3e-92 343.6 266 66.5
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.7e-92 343.2 252 68.3
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 3.9e-92 342.0 251 68.9
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 3.9e-92 342.0 198 81.3
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 1.1e-91 340.5 252 74.6
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 1.1e-91 340.5 252 68.3
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 1.5e-91 340.1 258 66.7
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.5e-91 340.1 250 68.8
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 5.6e-91 338.2 202 78.7
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 5.6e-91 338.2 246 67.1
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 7.3e-91 337.8 257 66.9
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 1.2e-90 337.0 283 61.8
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.2e-90 337.0 266 64.7
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 3.6e-90 335.5 259 66.4
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 4.7e-90 335.1 259 66.8
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 4.7e-90 335.1 254 67.3
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.1e-89 334.0 251 68.5
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 1.4e-89 333.6 202 76.2
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.4e-89 333.6 252 67.5
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 1.4e-89 333.6 256 68.0
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 3.1e-89 332.4 200 78.0
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 4.0e-89 332.0 233 68.7
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 4.0e-89 332.0 278 62.2
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 4.4e-88 328.6 265 64.9
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.3e-87 327.0 206 76.2
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.3e-87 327.0 272 60.7
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 2.2e-87 326.2 270 62.2
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 4.9e-87 325.1 197 76.6
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 8.4e-87 324.3 202 75.2
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 1.1e-86 323.9 277 60.6
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 1.1e-86 323.9 277 60.6
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 1.4e-86 323.6 275 60.7
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.4e-86 322.8 203 74.4
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 5.4e-86 321.6 278 60.8
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 5.4e-86 321.6 277 60.3
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 5.4e-86 321.6 277 60.3
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 1.2e-85 320.5 277 60.6
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 1.2e-85 320.5 290 59.0
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 2.7e-85 319.3 244 66.0
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 3.5e-85 318.9 273 61.2
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 4.6e-85 318.5 202 74.8
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 4.6e-85 318.5 202 74.8
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 6.0e-85 318.2 275 60.7
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 6.0e-85 318.2 203 74.4
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 1.0e-84 317.4 197 74.6
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 3.9e-84 315.5 279 60.2
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 5.1e-84 315.1 279 59.9
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 4.3e-83 312.0 211 71.6
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 7.3e-83 311.2 206 68.9
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 1.6e-82 310.1 281 59.1
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 5.3e-81 305.1 208 69.2
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 5.8e-80 301.6 250 62.0
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.7e-79 300.1 208 69.2
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 7.4e-75 284.6 190 71.6
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.2e-69 267.3 234 59.8
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.8e-68 263.5 198 63.6
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 8.7e-68 261.2 204 65.7
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 2.1e-66 256.5 245 56.7
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 1.4e-65 253.8 187 69.0
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 1.5e-64 250.4 253 54.9
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 5.8e-64 248.4 238 54.2
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 1.0e-63 247.7 202 56.9
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 5.5e-62 241.9 264 47.7
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 1.9e-59 233.4 217 53.9
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.4e-57 227.3 178 62.4
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 5.9e-56 221.9 175 62.3
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 6.5e-55 218.4 177 61.0
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 7.2e-54 214.9 178 59.0
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.0e-52 211.1 173 61.3
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 4.3e-51 205.7 170 57.1
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 2.2e-47 193.4 236 43.6
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 4.2e-46 189.1 108 85.2
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 6.5e-39 165.2 212 40.1
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 4.7e-29 132.5 82 82.9
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.0e-27 127.1 174 43.7
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 2.6e-27 126.7 170 40.0
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 7.5e-27 125.2 78 84.6
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 1.6e-24 117.5 227 32.6
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 6.1e-21 105.5 52 96.2
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 3.0e-20 103.2 57 86.0
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-17 94.0 48 89.6
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 9.2e-09 65.1 174 28.2
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 3.5e-08 63.2 148 31.1
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.5e-08 62.8 177 28.2
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.5e-08 62.8 177 28.2
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 4.5e-08 62.8 179 27.9
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 4.5e-08 62.8 180 27.2
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 7.8e-08 62.0 186 26.9
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 7.8e-08 62.0 173 27.7
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 7.8e-08 62.0 189 25.9
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 1.0e-07 61.6 174 28.2
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 1.3e-07 61.2 173 27.7
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 1.3e-07 61.2 183 27.9
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.7e-07 60.8 187 29.9
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 1.7e-07 60.8 179 30.7
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.7e-07 60.8 182 28.6
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 2.3e-07 60.5 180 27.8
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.3e-07 60.5 162 28.4
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 2.3e-07 60.5 173 27.7
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 2.9e-07 60.1 175 28.0
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 2.9e-07 60.1 181 27.1
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 2.9e-07 60.1 186 27.4
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 2.9e-07 60.1 173 27.7
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 3.9e-07 59.7 184 27.7
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 5.0e-07 59.3 174 28.2
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 6.6e-07 58.9 176 26.7
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 1.1e-06 58.2 179 26.3
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 1.1e-06 58.2 178 26.4
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.5e-06 57.8 170 26.5
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.5e-06 57.8 153 26.1
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 1.5e-06 57.8 178 27.5
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.9e-06 57.4 154 29.9
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 1.9e-06 57.4 175 28.0
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 3.3e-06 56.6 184 28.8
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 3.3e-06 56.6 171 26.3
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 3.3e-06 56.6 177 26.0
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 3.3e-06 56.6 173 30.1
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 4.3e-06 56.2 183 26.8
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 5.6e-06 55.8 156 28.8
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 5.6e-06 55.8 177 29.4
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 5.6e-06 55.8 173 27.2
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 5.6e-06 55.8 189 28.0
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 7.3e-06 55.5 183 26.8
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 7.3e-06 55.5 56 58.9
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 7.3e-06 55.5 178 28.1
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 9.5e-06 55.1 164 25.6


User provided reference genes

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