Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold23G10212 Striga asiatica HOM05D000399 ORTHO05D000304 2.2e-125 452.2 212 100.0
SGA_v2.0_scaffold36G14385 Striga asiatica HOM05D000399 ORTHO05D000304 1.2e-51 207.2 160 70.0
MSTRG.6943 Avicennia marina HOM05D000399 ORTHO05D000304 4.7e-35 152.1 164 53.0
Actinidia35365 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.4e-31 140.6 236 41.1
Oeu005523.2 Olea europaea HOM05D000399 ORTHO05D000304 1.4e-31 140.6 165 51.5
Migut.M01731 Erythranthe guttata HOM05D000399 ORTHO05D000304 3.8e-29 132.5 164 51.2
Dinv40784 Davidia involucrata HOM05D000399 ORTHO05D000304 1.1e-28 131.0 115 60.0
CSS0028681 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.5e-28 128.6 168 46.4
RhsimUnG0248400 Rhododendron simsii HOM05D000399 ORTHO05D000304 7.2e-28 128.3 123 54.5
Cc05_g14090 Coffea canephora HOM05D000399 ORTHO05D000304 9.4e-28 127.9 165 46.7
Nitab4.5_0005265g0030 Nicotiana tabacum HOM05D000399 ORTHO05D000304 9.4e-28 127.9 163 46.0
Nitab4.5_0000981g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.7e-27 126.3 108 60.2
PGSC0003DMG400012864 Solanum tuberosum HOM05D000399 ORTHO05D000304 2.3e-26 123.2 163 46.0
Lj1C878T5 Lonicera japonica HOM05D000399 ORTHO05D000304 6.8e-26 121.7 115 54.8
TAR626G0927 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.2e-25 120.9 167 42.5
vmacro09696 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.5e-25 120.6 160 45.0
GSVIVG01037698001 Vitis vinifera HOM05D000399 ORTHO05D000304 2.0e-25 120.2 164 47.6
Ciclev10008694m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.6e-25 119.8 169 46.2
Sopen12g007270 Solanum pennellii HOM05D000399 ORTHO05D000304 2.6e-25 119.8 163 46.0
Solyc12g014410.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.4e-25 119.4 163 45.4
CSS0004286 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.7e-25 118.6 115 53.0
CANSAT01G2756 Cannabis sativa HOM05D000399 ORTHO05D000304 5.7e-25 118.6 165 46.1
DCAR_016850 Daucus carota HOM05D000399 ORTHO05D000304 7.5e-25 118.2 111 54.1
SalBow8G1530 Salvia bowleyana HOM05D000399 ORTHO05D000304 7.5e-25 118.2 166 45.8
QL08p006916 Quercus lobata HOM05D000399 ORTHO05D000304 9.8e-25 117.9 116 59.5
QL09p024256 Quercus lobata HOM05D000399 ORTHO05D000304 9.8e-25 117.9 116 59.5
Haze_09717 Corylus avellana HOM05D000399 ORTHO05D000304 1.7e-24 117.1 113 57.5
RcHm_v2.0_Chr5g0040931 Rosa chinensis HOM05D000399 ORTHO05D000304 2.2e-24 116.7 166 44.6
CiPaw.12G132200 Carya illinoinensis HOM05D000399 ORTHO05D000304 4.8e-24 115.5 115 58.3
Potri.011G086700 Populus trichocarpa HOM05D000399 ORTHO05D000304 6.3e-24 115.2 120 55.8
MD11G1212500 Malus domestica HOM05D000399 ORTHO05D000304 1.1e-23 114.4 165 44.2
CAN.G952.2 Capsicum annuum HOM05D000399 ORTHO05D000304 1.4e-23 114.0 110 56.4
Cfa020304 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.4e-23 114.0 113 55.8
Thecc.07G031500 Theobroma cacao HOM05D000399 ORTHO05D000304 1.8e-23 113.6 114 57.0
TAR624G0323 Trochodendron aralioides HOM05D000399 ORTHO05D000304 3.1e-23 112.8 165 42.4
MD03G1196200 Malus domestica HOM05D000399 ORTHO05D000304 5.4e-23 112.1 115 56.5
Manes.15G068000 Manihot esculenta HOM05D000399 ORTHO05D000304 1.2e-22 110.9 163 42.9
FAN16G0322 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.6e-22 110.5 116 50.0
Duzib213G0551 Durio zibethinus HOM05D000399 ORTHO05D000304 7.7e-22 108.2 117 54.7
Nn1g03450 Nelumbo nucifera HOM05D000399 ORTHO05D000304 7.7e-22 108.2 160 43.8
arahy.Tifrunner.gnm1.ann1.7RWM6D Arachis hypogaea HOM05D000399 ORTHO05D000304 1.7e-21 107.1 164 42.7
QL08p006924 Quercus lobata HOM05D000399 ORTHO05D000304 1.7e-21 107.1 116 55.2
QL09p024268 Quercus lobata HOM05D000399 ORTHO05D000304 1.7e-21 107.1 116 55.2
TAR629G3020 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.7e-21 107.1 115 51.3
Atru.chr2.3497 Acer truncatum HOM05D000399 ORTHO05D000304 2.2e-21 106.7 115 53.0
Prupe.4G219200 Prunus persica HOM05D000399 ORTHO05D000304 2.2e-21 106.7 122 50.8
FAN25G2496 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.8e-21 105.9 122 48.4
QL01p000915 Quercus lobata HOM05D000399 ORTHO05D000304 3.8e-21 105.9 112 57.1
TWI39G0857 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 3.8e-21 105.9 160 43.8
FAN25G1948 Fragaria x ananassa HOM05D000399 ORTHO05D000304 5.0e-21 105.5 113 50.4
Sc07g0002840 Simmondsia chinensis HOM05D000399 ORTHO05D000304 5.0e-21 105.5 110 52.7
CAN.G492.19 Capsicum annuum HOM05D000399 ORTHO05D000304 8.5e-21 104.8 110 50.0
LjContig00272g0000787 Lotus japonicus HOM05D000399 ORTHO05D000304 8.5e-21 104.8 113 51.3
Lalb_Chr04g0248271 Lupinus albus HOM05D000399 ORTHO05D000304 8.5e-21 104.8 161 44.1
PSO541G6031 Papaver somniferum HOM05D000399 ORTHO05D000304 8.5e-21 104.8 169 41.4
PSO675G6810 Papaver somniferum HOM05D000399 ORTHO05D000304 8.5e-21 104.8 169 41.4
MELO3C014194.2 Cucumis melo HOM05D000399 ORTHO05D000304 1.1e-20 104.4 166 41.6
arahy.Tifrunner.gnm1.ann1.U657KI Arachis hypogaea HOM05D000399 ORTHO05D000304 1.5e-20 104.0 162 40.7
MBI10_g29392_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 1.9e-20 103.6 155 42.6
Peaxi162Scf00339g00079 Petunia axillaris HOM05D000399 ORTHO05D000304 1.9e-20 103.6 110 56.4
COL.COLO4_09700 Corchorus olitorius HOM05D001348 ORTHO05D000304 3.2e-20 102.8 112 54.5
ECA248G1950 Erigeron canadensis HOM05D000399 ORTHO05D000304 5.5e-20 102.1 113 54.0
CsaV3_4G013380 Cucumis sativus L. HOM05D000399 ORTHO05D000304 7.2e-20 101.7 166 40.4
EL10Ac4g07760 Beta vulgaris HOM05D000399 ORTHO05D000304 9.4e-20 101.3 161 42.2
Eucgr.F00717 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.2e-19 100.9 114 50.9
CsaV3_3G004960 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.6e-19 100.5 166 40.4
FvH4_3g23250 Fragaria vesca HOM05D000399 ORTHO05D000304 3.6e-19 99.4 114 48.2
ECA236G2771 Erigeron canadensis HOM05D000399 ORTHO05D000304 4.7e-19 99.0 112 53.6
Gohir.A04G012700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.7e-19 99.0 111 52.3
Lsat_1_v5_gn_3_14921 Lactuca sativa HOM05D000399 ORTHO05D000304 4.7e-19 99.0 117 49.6
Gohir.D05G373200 Gossypium hirsutum HOM05D000399 ORTHO05D000304 8.0e-19 98.2 111 52.3
Gorai.009G441900 Gossypium raimondii HOM05D000399 ORTHO05D000304 8.0e-19 98.2 111 52.3
AUR62015826 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.4e-18 97.4 159 40.3
ClCG10G005250 Citrullus lanatus HOM05D000399 ORTHO05D000304 1.4e-18 97.4 116 48.3
Phvul.008G269800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.4e-18 97.4 168 39.9
Hund23862 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.4e-18 97.4 110 52.7
Ca_06337_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.0e-18 96.3 116 49.1
PGR083G1485 Punica granatum HOM05D000399 ORTHO05D000304 3.0e-18 96.3 116 50.0
Prupe.4G219400 Prunus persica HOM05D000399 ORTHO05D000304 4.0e-18 95.9 120 49.2
Cpa.g.sc12.267 Carica papaya HOM05D000399 ORTHO05D000304 5.2e-18 95.5 166 41.0
PGSC0003DMG400014420 Solanum tuberosum HOM05D000399 ORTHO05D000304 8.8e-18 94.7 74 64.9
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.5e-17 94.0 104 49.0
AUR62020392 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.5e-17 94.0 159 39.6
FAN11G3687 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.0e-17 93.6 113 48.7
BcaC01g01692 Brassica carinata HOM05D000399 ORTHO05D000304 3.4e-17 92.8 109 48.6
BcaC05g28326 Brassica carinata HOM05D000399 ORTHO05D000304 3.4e-17 92.8 109 48.6
C05p43940 Brassica napus HOM05D000399 ORTHO05D000304 3.4e-17 92.8 109 47.7
BolC5t33112H Brassica oleracea HOM05D000399 ORTHO05D000304 3.4e-17 92.8 109 48.6
Sp3g18430 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.4e-17 92.8 109 43.1
QL08p008239 Quercus lobata HOM05D000399 ORTHO05D000304 4.4e-17 92.4 116 48.3
AL3G34140 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 7.5e-17 91.7 112 44.6
Nitab4.5_0004927g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 7.5e-17 91.7 110 48.2
Sed0015579 Sechium edule HOM05D000399 ORTHO05D000304 7.5e-17 91.7 114 48.2
HanXRQChr17g0546431 Helianthus annuus HOM05D000399 ORTHO05D000304 9.8e-17 91.3 156 41.7
Sed0023956 Sechium edule HOM05D000399 ORTHO05D000304 9.8e-17 91.3 161 41.6
Psat2g012440 Pisum sativum HOM05D000399 ORTHO05D000304 1.7e-16 90.5 113 46.0
TPR.G17891 Trifolium pratense HOM05D001608 ORTHO05D002070 1.7e-16 90.5 112 45.5
THA.LOC104817859 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 2.8e-16 89.7 160 39.4
HanXRQChr17g0546441 Helianthus annuus HOM05D000399 ORTHO05D000304 3.7e-16 89.4 166 36.7
AT3G20420 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 4.9e-16 89.0 112 43.8
Lsat_1_v5_gn_7_114480 Lactuca sativa HOM05D000399 ORTHO05D000304 6.3e-16 88.6 72 62.5
Medtr3g096700 Medicago truncatula HOM05D000399 ORTHO05D000304 6.3e-16 88.6 116 45.7
AUR62020393 Chenopodium quinoa HOM05D000399 ORTHO05D000304 8.3e-16 88.2 103 47.6
Glyma.14G021600 Glycine max HOM05D000399 ORTHO05D000304 8.3e-16 88.2 118 47.5
A05p28480 Brassica napus HOM05D000399 ORTHO05D000304 1.1e-15 87.8 109 46.8
BraA05t21727Z Brassica rapa HOM05D000399 ORTHO05D000304 1.1e-15 87.8 109 46.8
QL08p008192 Quercus lobata HOM05D000399 ORTHO05D000304 1.1e-15 87.8 114 48.2
Ah.03g148780 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.4e-15 87.4 161 37.3
TPR.G1198 Trifolium pratense HOM05D000399 ORTHO05D000304 1.8e-15 87.0 113 46.9
CARHR096130 Cardamine hirsuta HOM05D000399 ORTHO05D000304 2.4e-15 86.7 111 39.6
QL08p008278 Quercus lobata HOM05D000399 ORTHO05D000304 3.1e-15 86.3 113 48.7
VMungo0647G2567 Vigna mungo HOM05D000399 ORTHO05D000304 3.1e-15 86.3 121 43.0
Thhalv10020929m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 5.4e-15 85.5 112 40.2
Aqoxy4G01902 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 7.0e-15 85.1 159 35.2
Carub.0003s2036 Capsella rubella HOM05D000399 ORTHO05D000304 7.0e-15 85.1 109 42.2
MELO3C014193.2 Cucumis melo HOM05D000399 ORTHO05D000304 7.0e-15 85.1 163 37.4
Medtr8g058930 Medicago truncatula HOM05D000399 ORTHO05D000304 2.7e-14 83.2 113 42.5
DCAR_030339 Daucus carota HOM05D000399 ORTHO05D000304 3.5e-14 82.8 109 41.3
TPR.G10756 Trifolium pratense HOM05D000399 ORTHO05D000304 1.0e-13 81.3 112 42.0
CDE11G1088 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.7e-13 80.5 167 35.3
Aa31LG8G7230 Aethionema arabicum HOM05D000399 ORTHO05D000304 2.3e-13 80.1 113 39.8
RcHm_v2.0_Chr5g0040941 Rosa chinensis HOM05D000399 ORTHO05D000304 2.3e-13 80.1 112 42.9
Hund23225 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.3e-13 80.1 106 47.2
HPP92_005298 Vanilla planifolia HOM05D000399 ORTHO05D000304 2.9e-13 79.7 188 29.8
CsaV3_3G004950 Cucumis sativus L. HOM05D000399 ORTHO05D000304 3.8e-13 79.3 161 39.1
VMungo1309G1448 Vigna mungo HOM05D000399 ORTHO05D000304 3.8e-13 79.3 173 37.0
BcaB06g26107 Brassica carinata HOM05D000399 ORTHO05D000304 5.0e-13 79.0 112 42.0
HPP92_008857 Vanilla planifolia HOM05D000399 ORTHO05D000304 2.5e-12 76.6 180 32.2
CsaV3_4G013400 Cucumis sativus L. HOM05D000399 ORTHO05D000304 4.3e-12 75.9 161 37.9
Lj5g0016531 Lotus japonicus HOM05D000399 ORTHO05D000304 4.3e-12 75.9 70 57.1
EL10Ac4g07761 Beta vulgaris HOM05D000399 ORTHO05D000304 1.2e-11 74.3 158 36.7
AUR62015825 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.2e-11 74.3 103 43.7
Rhsim13G0151000 Rhododendron simsii HOM05D000399 ORTHO05D000304 6.1e-11 72.0 201 30.3
TPR.G13409 Trifolium pratense HOM05D000399 ORTHO05D000304 6.1e-11 72.0 68 54.4
Eucgr.F00718 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.3e-08 64.3 105 41.9
Os05g0271300 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 3.7e-08 62.8 107 37.4
MD11G1212400 Malus domestica HOM05D000399 ORTHO05D000304 4.9e-08 62.4 150 36.0
Nitab4.5_0001393g0110 Nicotiana tabacum HOM05D000399 ORTHO05D000304 8.3e-08 61.6 158 32.3
Solyc10g006200.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 9.2e-07 58.2 99 41.4
Lsat_1_v5_gn_7_109260 Lactuca sativa HOM05D000399 ORTHO05D000304 2.7e-06 56.6 116 31.9
Nitab4.5_0004829g0060 Nicotiana tabacum HOM05D000399 ORTHO05D000304 3.5e-06 56.2 48 50.0
QL08p008309 Quercus lobata HOM05D000399 ORTHO05D000304 3.5e-06 56.2 71 47.9
QL05p059181 Quercus lobata HOM05D000399 ORTHO05D000304 5.9e-06 55.5 65 55.4


User provided reference genes

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