Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 0.0e+00 2171.7 1190 100.0
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 0.0e+00 1316.2 1296 60.5
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 0.0e+00 1300.4 1250 60.1
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 1.5e-308 1063.1 1366 51.2
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 2.8e-302 1042.3 1230 53.3
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.4e-290 1003.4 1362 48.3
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 2.6e-284 982.6 1304 47.4
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 3.0e-280 969.1 1362 46.0
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 6.6e-280 968.0 1263 47.7
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 3.6e-278 962.2 1358 47.5
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 9.9e-276 954.1 1302 46.8
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 1.8e-272 943.3 1211 49.5
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 5.3e-269 931.8 1211 48.5
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 2.0e-268 929.9 1332 48.1
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.2e-265 920.6 1376 43.4
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 4.6e-265 918.7 1298 46.3
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 5.1e-264 915.2 1293 45.2
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 2.6e-260 902.9 1298 44.8
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 4.5e-260 902.1 1386 42.3
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 7.9e-257 891.3 1255 46.0
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 3.9e-256 889.0 1320 43.5
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 8.5e-251 871.3 1380 41.4
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 3.9e-248 862.4 1303 45.7
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 1.1e-247 860.9 1230 45.7
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 7.4e-247 858.2 1255 45.4
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 3.1e-245 852.8 1302 43.3
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 4.1e-245 852.4 1262 43.9
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 6.5e-243 845.1 1261 43.4
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 8.5e-243 844.7 1260 43.3
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 9.4e-242 841.3 1339 41.2
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.2e-241 840.9 1203 44.0
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 2.3e-240 836.6 1337 44.3
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 2.0e-239 833.6 1227 44.1
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 1.3e-238 830.9 1341 44.3
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.5e-236 823.9 1295 42.8
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 3.4e-236 822.8 1276 43.3
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 2.5e-234 816.6 1284 46.3
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 1.0e-232 811.2 1292 45.1
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 5.2e-232 808.9 1318 44.9
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 6.7e-232 808.5 1224 42.6
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.1e-226 791.2 1285 41.8
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 3.6e-225 786.2 1335 41.3
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 2.2e-219 766.9 1273 41.2
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 2.9e-219 766.5 1329 40.4
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.5e-215 754.2 1259 40.9
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.3e-211 741.1 1255 39.0
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 8.0e-209 731.9 1254 40.9
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 4.4e-207 726.1 1166 41.4
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.5e-207 725.3 1304 39.3
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.7e-206 724.2 1264 39.9
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.0e-205 718.8 1313 39.0
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 4.5e-204 716.1 1321 38.5
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 5.9e-204 715.7 1140 43.4
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 8.0e-201 705.3 1215 40.0
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 2.6e-199 700.3 869 47.1
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 2.2e-198 697.2 1255 40.1
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 5.4e-197 692.6 1203 40.4
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 7.0e-197 692.2 1226 40.4
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 2.0e-196 690.6 1365 36.5
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 2.0e-196 690.6 1256 39.6
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 7.8e-196 688.7 1254 39.6
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 3.7e-190 669.8 1252 39.3
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.7e-182 644.4 1190 39.3
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.4e-181 640.6 1191 38.7
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 1.6e-169 601.3 1220 38.2
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 4.0e-168 596.7 1251 35.9
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.2e-165 587.0 1210 36.8
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 7.1e-165 585.9 1255 36.0
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 2.1e-164 584.3 1220 37.5
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 1.9e-162 577.8 1271 35.5
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 3.3e-162 577.0 1252 35.3
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 2.8e-161 573.9 1247 37.0
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 2.4e-160 570.9 1254 34.1
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 7.6e-159 565.8 1250 34.7
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 9.9e-159 565.5 1255 33.1
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 1.7e-158 564.7 1196 37.5
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 4.9e-158 563.1 1258 34.9
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 8.4e-158 562.4 1251 36.2
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 2.7e-156 557.4 1037 36.6
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.9e-154 551.2 1225 34.8
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 5.6e-154 549.7 1248 36.9
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 7.4e-146 522.7 1190 33.4
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 2.4e-144 517.7 879 37.3
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 3.4e-143 513.8 744 41.8
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 1.7e-129 468.4 1241 32.7
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 8.2e-129 466.1 1150 32.9
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 1.8e-115 421.8 1359 29.6
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.2e-113 414.8 687 43.5
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 1.8e-104 385.2 914 34.5
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.1e-101 375.9 500 44.4
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 1.8e-96 358.6 760 33.4
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 6.1e-92 343.6 1124 28.7
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.4e-88 332.4 724 34.9
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 5.6e-85 320.5 505 44.8
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.6e-79 302.4 733 34.1
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 6.4e-65 253.8 1496 24.5
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 7.1e-64 250.4 1638 23.9
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 6.6e-62 243.8 226 54.9
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 6.8e-59 233.8 157 71.3
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 2.9e-57 228.4 998 29.1
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 9.3e-56 223.4 352 42.6
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.5e-55 221.5 353 38.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 5.1e-54 217.6 1204 26.0
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 1.1e-51 209.9 275 42.9
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 3.5e-39 168.3 100 78.0
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 3.2e-32 145.2 165 45.5
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.1e-31 142.5 332 32.5
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.9e-30 138.3 199 41.7
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 2.2e-25 122.5 253 34.8
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.1e-19 102.1 77 59.7
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.3e-19 101.3 77 59.7
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 2.6e-18 99.0 122 39.3
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 1.7e-17 96.3 98 42.9
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.9e-17 95.5 74 56.8
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 1.5e-13 83.2 183 33.3
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 1.5e-13 83.2 100 44.0
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 4.3e-13 81.6 154 33.1
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 9.7e-13 80.5 54 66.7
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 2.8e-12 79.0 97 44.3
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 2.8e-12 79.0 202 31.2
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 9.1e-11 73.9 110 44.5
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 2.0e-10 72.8 72 48.6
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 5.9e-10 71.2 63 55.6
AUR62023840 Chenopodium quinoa HOM05D002300 ORTHO05D002340 7.7e-10 70.9 740 20.5
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 7.7e-10 70.9 233 28.8
AUR62002349 Chenopodium quinoa HOM05D002300 ORTHO05D002340 2.2e-09 69.3 736 20.1
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 2.9e-09 68.9 177 32.2
Lj3g0017734 Lotus japonicus HOM05D002300 ORTHO05D002340 5.0e-09 68.2 751 21.3
Cc03_g12090 Coffea canephora HOM05D002300 ORTHO05D002340 1.1e-08 67.0 360 23.3
MBI11_g10482_MAGBIO Magnolia biondii HOM05D002300 ORTHO05D002340 1.4e-08 66.6 718 21.0
HPP92_021918 Vanilla planifolia HOM05D002300 ORTHO05D002340 4.2e-08 65.1 75 42.7
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 5.5e-08 64.7 145 26.9
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 7.2e-08 64.3 97 41.2
SEGI_23247 Sequoiadendron giganteum HOM05D002300 ORTHO05D002340 9.4e-08 63.9 744 22.2
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.6e-07 63.2 191 29.3
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 1.6e-07 63.2 69 43.5
ATR0743G014 Amborella trichopoda HOM05D002300 ORTHO05D002340 3.6e-07 62.0 144 27.1
Aqoxy2G04157 Aquilegia oxysepala HOM05D002300 ORTHO05D002340 3.6e-07 62.0 727 21.9
C04p04460 Brassica napus HOM05D002300 ORTHO05D002340 4.7e-07 61.6 113 30.1
Phvul.011G053300 Phaseolus vulgaris HOM05D002300 ORTHO05D002340 7.9e-07 60.8 708 20.5
Psat7g209640 Pisum sativum HOM05D002300 ORTHO05D002340 7.9e-07 60.8 71 38.0
Nitab4.5_0006064g0040 Nicotiana tabacum HOM05D002300 ORTHO05D002340 1.0e-06 60.5 71 39.4
A09p51810 Brassica napus HOM05D002300 ORTHO05D002340 1.4e-06 60.1 113 32.7
BraA09t40616Z Brassica rapa HOM05D002300 ORTHO05D002340 1.4e-06 60.1 113 32.7
PGR083G0540 Punica granatum HOM05D002300 ORTHO05D002340 1.4e-06 60.1 73 35.6
Sc19g0002840 Simmondsia chinensis HOM05D002300 ORTHO05D002340 1.4e-06 60.1 147 27.9
AL4G42150 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 1.8e-06 59.7 113 28.3
AT2G43410 Arabidopsis thaliana HOM05D002300 ORTHO05D002340 1.8e-06 59.7 113 28.3
Peaxi162Scf00180g00216 Petunia axillaris HOM05D002300 ORTHO05D002340 1.8e-06 59.7 72 38.9
Ah.13g073790 Amaranthus hybridus HOM05D002300 ORTHO05D002340 2.3e-06 59.3 153 22.9
BcaC02g12397 Brassica carinata HOM05D002300 ORTHO05D002340 2.3e-06 59.3 113 30.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 3.0e-06 58.9 51 45.1
TPR.G34226 Trifolium pratense HOM05D002300 ORTHO05D002340 3.0e-06 58.9 71 35.2
BcaC07g40485 Brassica carinata HOM05D002300 ORTHO05D002340 3.9e-06 58.5 71 40.8
C08p34540 Brassica napus HOM05D002300 ORTHO05D002340 3.9e-06 58.5 71 40.8
BolC8t51055H Brassica oleracea HOM05D002300 ORTHO05D002340 3.9e-06 58.5 71 40.8
CDE06G1373 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 3.9e-06 58.5 73 35.6
Pp3c11_21890 Physcomitrium patens HOM05D002300 ORTHO05D002340 3.9e-06 58.5 73 32.9
Sp4g25510 Schrenkiella parvula HOM05D002300 ORTHO05D002340 3.9e-06 58.5 113 29.2
CARHR138490 Cardamine hirsuta HOM05D002300 ORTHO05D002340 5.1e-06 58.2 83 38.6
ECA248G2483 Erigeron canadensis HOM05D002300 ORTHO05D002340 5.1e-06 58.2 113 30.1
AL5G41460 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 6.7e-06 57.8 71 39.4
A05p03760 Brassica napus HOM05D002300 ORTHO05D002340 6.7e-06 57.8 71 38.0
BolC4t22079H Brassica oleracea HOM05D002042 ORTHO05D002340 6.7e-06 57.8 71 38.0
CARHR169930 Cardamine hirsuta HOM05D002300 ORTHO05D002340 6.7e-06 57.8 71 39.4
CDE08G0044 Ceratophyllum demersum HOM05D002300 ORTHO05D002340 6.7e-06 57.8 172 24.4
Thhalv10001307m.g Eutrema salsugineum HOM05D002300 ORTHO05D002340 6.7e-06 57.8 113 29.2
VMungo1127G0975 Vigna mungo HOM05D002300 ORTHO05D002340 6.7e-06 57.8 114 26.3
Glyma.12G051000 Glycine max HOM05D002300 ORTHO05D002340 8.8e-06 57.4 73 34.2
Sed0001804 Sechium edule HOM05D002300 ORTHO05D002340 8.8e-06 57.4 72 36.1
Sopen06g008320 Solanum pennellii HOM05D002300 ORTHO05D002340 8.8e-06 57.4 71 36.6


User provided reference genes

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