Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 1.8e-234 816.6 479 100.0
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 3.6e-134 483.4 489 64.2
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 3.0e-101 374.0 483 56.7
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.4e-82 312.0 446 53.4
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 1.8e-69 268.5 440 48.6
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 4.7e-62 243.8 407 49.4
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 3.1e-61 241.1 413 48.2
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 8.4e-59 233.0 463 44.5
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 4.3e-55 220.7 247 50.6
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 2.8e-54 218.0 483 42.4
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 4.7e-54 217.2 489 42.7
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 3.2e-50 204.5 460 42.6
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 3.0e-48 198.0 489 36.2
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 6.2e-46 190.3 470 40.6
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 6.2e-46 190.3 289 39.4
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 2.4e-45 188.3 477 40.3
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 9.9e-44 183.0 481 41.4
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 2.2e-43 181.8 484 40.7
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.4e-42 179.1 482 41.5
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.1e-41 175.3 457 42.0
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 3.9e-40 171.0 477 40.5
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 4.3e-39 167.5 448 27.9
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 4.3e-39 167.5 476 26.7
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 7.4e-39 166.8 303 34.7
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 1.6e-38 165.6 484 39.3
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 1.5e-36 159.1 356 33.4
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.6e-36 158.3 391 37.3
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 3.4e-36 157.9 214 37.9
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 5.8e-36 157.1 480 39.6
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 1.3e-35 156.0 411 39.4
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 1.3e-35 156.0 411 39.7
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.9e-34 152.1 235 37.9
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 5.5e-34 150.6 332 32.5
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 5.5e-34 150.6 332 32.5
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.2e-33 149.4 476 38.2
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 6.0e-33 147.1 206 38.8
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.3e-32 145.2 247 43.7
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.5e-31 141.7 490 29.0
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 1.6e-30 139.0 484 34.5
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 2.1e-30 138.7 310 32.9
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.1e-30 138.7 235 37.9
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.4e-29 136.0 495 36.8
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 4.0e-29 134.4 254 34.3
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 1.3e-27 129.4 171 41.5
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 2.2e-27 128.6 185 38.9
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 8.4e-27 126.7 174 39.7
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 8.4e-27 126.7 248 31.9
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 3.2e-26 124.8 163 38.7
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 3.2e-26 124.8 160 40.0
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 4.2e-26 124.4 167 36.5
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 1.6e-25 122.5 167 36.5
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.1e-25 122.1 190 37.4
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 3.5e-25 121.3 247 56.3
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 6.0e-25 120.6 180 34.4
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 1.0e-24 119.8 178 40.4
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 3.0e-24 118.2 179 35.2
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.9e-23 115.5 200 35.0
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 7.4e-23 113.6 285 44.2
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 2.2e-22 112.1 128 36.7
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 6.3e-22 110.5 456 35.5
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 8.2e-22 110.2 178 34.8
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 1.1e-21 109.8 119 42.0
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.4e-21 109.4 429 33.6
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 2.4e-21 108.6 156 35.3
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 3.1e-21 108.2 181 35.9
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 4.1e-21 107.8 145 37.2
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 4.1e-21 107.8 126 37.3
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 4.1e-21 107.8 166 34.9
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 5.3e-21 107.5 337 27.9
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 6.9e-21 107.1 126 38.9
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 6.9e-21 107.1 187 35.3
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.0e-20 105.5 143 39.2
Migut.A00317 Erythranthe guttata HOM05D006287 ORTHO05D008192 4.5e-20 104.4 266 52.3
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 5.9e-20 104.0 193 32.6
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 1.0e-19 103.2 162 35.8
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 1.3e-19 102.8 196 33.2
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.3e-19 102.8 187 35.8
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 2.9e-19 101.7 184 32.1
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 1.1e-18 99.8 103 50.5
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.9e-18 99.0 181 34.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 4.2e-18 97.8 147 35.4
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 5.5e-18 97.4 357 37.8
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.2e-17 96.3 145 35.9
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.6e-17 95.9 126 38.1
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 2.7e-17 95.1 432 28.5
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.7e-17 95.1 432 28.5
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 4.6e-17 94.4 108 37.0
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 6.1e-17 94.0 178 32.0
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 2.3e-16 92.0 117 35.0
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 3.0e-16 91.7 181 37.0
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 8.8e-16 90.1 168 32.7
CAN.G1030.28 Capsicum annuum HOM05D006287 ORTHO05D008192 1.5e-15 89.4 152 73.0
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 2.5e-15 88.6 155 36.1
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 5.7e-15 87.4 191 29.3
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 2.2e-14 85.5 198 28.8
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 2.2e-14 85.5 469 33.9
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 2.8e-14 85.1 177 32.8
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 3.7e-14 84.7 273 27.5
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 4.8e-14 84.3 204 30.4
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 6.3e-14 84.0 132 37.9
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 1.8e-13 82.4 176 33.0
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 1.8e-13 82.4 156 29.5
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 4.5e-12 77.8 228 27.6
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 5.9e-12 77.4 144 31.2
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 1.0e-11 76.6 124 32.3
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 2.2e-11 75.5 374 36.1
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 3.8e-11 74.7 125 32.8
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.1e-10 73.2 99 35.4
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 1.9e-10 72.4 184 33.7
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 4.2e-10 71.2 66 50.0
TWI63G0498 Tripterygium wilfordii HOM05D002890 ORTHO05D009847 5.5e-10 70.9 269 23.0
BcaNung04646 Brassica carinata HOM05D006287 ORTHO05D008192 1.2e-09 69.7 68 44.1
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 1.8e-08 65.9 204 25.5
MBI01_g07128_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 2.0e-07 62.4 224 24.1
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 2.6e-07 62.0 54 44.4
TAR624G0355 Trochodendron aralioides HOM05D002890 ORTHO05D009847 9.7e-07 60.1 190 24.2
BcaNung04645 Brassica carinata HOM05D006287 ORTHO05D008192 1.7e-06 59.3 136 30.1
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.7e-06 59.3 62 41.9
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 1.7e-06 59.3 59 45.8
Sabra11G0096300 Salix brachista HOM05D000891 ORTHO05D008746 1.7e-06 59.3 67 37.3
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 2.2e-06 58.9 65 38.5
Potri.011G108500 Populus trichocarpa HOM05D002453 ORTHO05D008746 3.7e-06 58.2 67 38.8
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 4.8e-06 57.8 62 41.9
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 4.8e-06 57.8 97 33.0


User provided reference genes

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