Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold228G43254 Striga asiatica HOM05D000978 ORTHO05D005320 1.0e-110 403.3 191 100.0
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.8e-52 208.8 204 61.3
SGA_v2.0_scaffold100G29630 Striga asiatica HOM05D000978 ORTHO05D000813 3.4e-29 132.5 73 80.8
SGA_v2.0_scaffold22G09802 Striga asiatica HOM05D000978 ORTHO05D000813 7.4e-24 114.8 73 65.8
Oeu029213.1 Olea europaea HOM05D000978 ORTHO05D000813 1.0e-17 94.4 73 60.3
SalBow6G4065 Salvia bowleyana HOM05D000978 ORTHO05D000813 1.8e-14 83.6 73 52.1
MSTRG.18788 Avicennia marina HOM05D000978 ORTHO05D000813 3.5e-13 79.3 73 58.9
MSTRG.12387 Avicennia marina HOM05D000978 ORTHO05D000813 1.3e-12 77.4 73 50.7
Dinv18835 Davidia involucrata HOM05D000978 ORTHO05D000813 1.3e-12 77.4 76 50.0
Dinv09383 Davidia involucrata HOM05D000978 ORTHO05D000813 2.9e-12 76.3 84 44.0
CiPaw.14G094300 Carya illinoinensis HOM05D000978 ORTHO05D000813 6.5e-12 75.1 73 52.1
Oeu009043.2 Olea europaea HOM05D000978 ORTHO05D000813 8.5e-12 74.7 76 47.4
MSTRG.21013 Avicennia marina HOM05D000978 ORTHO05D000813 1.1e-11 74.3 81 46.9
PGSC0003DMG400005894 Solanum tuberosum HOM05D000978 ORTHO05D000813 1.1e-11 74.3 76 48.7
Oeu048834.2 Olea europaea HOM05D000978 ORTHO05D000813 1.9e-11 73.6 75 46.7
Lj1C267T8 Lonicera japonica HOM05D000978 ORTHO05D000813 3.2e-11 72.8 75 46.7
CAN.G1726.1 Capsicum annuum HOM05D000978 ORTHO05D000813 7.2e-11 71.6 76 48.7
CSS0008992 Camellia sinensis var. sinensis HOM05D000978 ORTHO05D000813 9.4e-11 71.2 76 48.7
CSS0038620 Camellia sinensis var. sinensis HOM05D000978 ORTHO05D000813 9.4e-11 71.2 76 48.7
PGSC0003DMG400019624 Solanum tuberosum HOM05D000978 ORTHO05D000813 9.4e-11 71.2 76 46.1
SGA_v2.0_scaffold268G46225 Striga asiatica HOM05D000978 ORTHO05D000813 1.2e-10 70.9 81 48.1
Cc01_g07640 Coffea canephora HOM05D000978 ORTHO05D000813 1.6e-10 70.5 73 47.9
Manes.04G060100 Manihot esculenta HOM05D000978 ORTHO05D000813 2.1e-10 70.1 76 47.4
Solyc06g074110.3 Solanum lycopersicum HOM05D000978 ORTHO05D000813 2.1e-10 70.1 76 46.1
Sopen06g030540 Solanum pennellii HOM05D000978 ORTHO05D000813 2.1e-10 70.1 76 46.1
SGA_v2.0_scaffold92G28141 Striga asiatica HOM05D000978 ORTHO05D000813 2.7e-10 69.7 75 50.7
CAN.G689.20 Capsicum annuum HOM05D000978 ORTHO05D000813 4.7e-10 68.9 76 47.4
Duzib168G0251 Durio zibethinus HOM05D000978 ORTHO05D000813 1.4e-09 67.4 78 46.2
Sopen11g027670 Solanum pennellii HOM05D000978 ORTHO05D000813 1.8e-09 67.0 76 43.4
Cfa010170 Carpinus fangiana HOM05D000978 ORTHO05D000813 2.3e-09 66.6 73 43.8
SalBow3G3004 Salvia bowleyana HOM05D000978 ORTHO05D000813 2.3e-09 66.6 81 45.7
MSTRG.17682 Avicennia marina HOM05D000978 ORTHO05D000813 3.0e-09 66.2 97 40.2
Haze_23556 Corylus avellana HOM05D000978 ORTHO05D000813 3.0e-09 66.2 73 45.2
Solyc11g068960.2 Solanum lycopersicum HOM05D000978 ORTHO05D000813 3.0e-09 66.2 76 43.4
CSS0042975 Camellia sinensis var. sinensis HOM05D000978 ORTHO05D000813 6.8e-09 65.1 75 46.7
Nitab4.5_0000380g0090 Nicotiana tabacum HOM05D000978 ORTHO05D000813 6.8e-09 65.1 76 46.1
Rhsim01G0201100 Rhododendron simsii HOM05D000978 ORTHO05D000813 6.8e-09 65.1 76 46.1
Actinidia24252 Actinidia chinensis HOM05D000978 ORTHO05D000813 8.8e-09 64.7 77 41.6
arahy.Tifrunner.gnm1.ann1.14I9QE Arachis hypogaea HOM05D000978 ORTHO05D000813 2.6e-08 63.2 74 40.5
arahy.Tifrunner.gnm1.ann1.A34414 Arachis hypogaea HOM05D000978 ORTHO05D000813 2.6e-08 63.2 74 40.5
Atru.chr3.3115 Acer truncatum HOM05D000978 ORTHO05D000813 4.4e-08 62.4 73 43.8
arahy.Tifrunner.gnm1.ann1.UZ1SEH Arachis hypogaea HOM05D000978 ORTHO05D000813 5.7e-08 62.0 72 41.7
CiPaw.13G129400 Carya illinoinensis HOM05D000978 ORTHO05D000813 5.7e-08 62.0 73 45.2
Nitab4.5_0010113g0010 Nicotiana tabacum HOM05D000978 ORTHO05D000813 9.8e-08 61.2 76 43.4
Duzib150G0471 Durio zibethinus HOM05D000978 ORTHO05D000813 1.3e-07 60.8 75 44.0
GSVIVG01037572001 Vitis vinifera HOM05D000978 ORTHO05D000813 1.3e-07 60.8 76 43.4
QL01p019775 Quercus lobata HOM05D000978 ORTHO05D000813 1.7e-07 60.5 72 40.3
vmacro14321 Vaccinium macrocarpon HOM05D000978 ORTHO05D000813 1.7e-07 60.5 76 42.1
TWI79G0638 Tripterygium wilfordii HOM05D000978 ORTHO05D000813 2.2e-07 60.1 76 43.4
Nitab4.5_0001491g0090 Nicotiana tabacum HOM05D000978 ORTHO05D000813 2.8e-07 59.7 76 42.1
CANSAT54G1931 Cannabis sativa HOM05D000978 ORTHO05D000813 8.3e-07 58.2 76 43.4
Gohir.A09G099100 Gossypium hirsutum HOM05D000978 ORTHO05D000813 1.1e-06 57.8 75 42.7
DCAR_018203 Daucus carota HOM05D000978 ORTHO05D000813 1.4e-06 57.4 76 40.8
Duzib170G0301 Durio zibethinus HOM05D000978 ORTHO05D000813 1.4e-06 57.4 76 40.8
Nitab4.5_0000158g0070 Nicotiana tabacum HOM05D000978 ORTHO05D000813 1.8e-06 57.0 76 40.8
PGR119G0843 Punica granatum HOM05D000978 ORTHO05D000813 1.8e-06 57.0 74 37.8
Gohir.D09G098500 Gossypium hirsutum HOM05D000978 ORTHO05D000813 2.4e-06 56.6 75 42.7
Gorai.006G115500 Gossypium raimondii HOM05D000978 ORTHO05D000813 2.4e-06 56.6 75 42.7
Potri.001G216900 Populus trichocarpa HOM05D000978 ORTHO05D000813 4.1e-06 55.8 76 40.8
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 4.1e-06 55.8 69 44.9
Sc21g0006800 Simmondsia chinensis HOM05D000978 ORTHO05D000813 5.4e-06 55.5 77 39.0
Medtr2g087295 Medicago truncatula HOM05D000978 ORTHO05D000813 7.0e-06 55.1 80 41.2
Medtr4g051565 Medicago truncatula HOM05D000978 ORTHO05D000813 9.1e-06 54.7 75 36.0


User provided reference genes

Program Settings