Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 9.3e-87 323.6 169 100.0
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.2e-81 306.6 169 91.7
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 6.5e-80 300.8 169 88.8
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.2e-79 298.1 169 87.6
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 84.6
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.0e-77 293.5 169 84.6
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 84.0
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.0e-77 292.0 167 86.2
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 5.1e-77 291.2 168 85.7
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 6.7e-77 290.8 168 85.7
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 6.7e-77 290.8 169 83.4
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 84.6
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 84.6
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.1e-76 290.0 167 84.4
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.1e-76 290.0 167 85.6
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.0e-76 289.3 169 82.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 84.0
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 83.4
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.5e-76 288.9 169 84.6
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 83.4
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 4.3e-76 288.1 166 83.7
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 84.0
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 5.7e-76 287.7 169 84.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 7.4e-76 287.3 169 83.4
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 83.4
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 9.7e-76 287.0 168 85.1
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 1.3e-75 286.6 169 84.6
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 1.7e-75 286.2 169 83.4
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 82.2
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.2e-75 285.8 166 84.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.2e-75 285.8 166 84.9
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.2e-75 285.8 166 84.9
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.2e-75 285.8 166 84.9
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.2e-75 285.8 169 82.8
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 2.8e-75 285.4 169 82.2
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.7e-75 285.0 166 84.9
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 3.7e-75 285.0 169 83.4
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.7e-75 285.0 168 83.9
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.7e-75 285.0 168 83.9
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 8.2e-75 283.9 169 82.2
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.1e-74 283.5 167 83.2
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.4e-74 283.1 168 82.7
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 1.4e-74 283.1 169 82.2
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.8e-74 282.7 166 82.5
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 81.7
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 82.2
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 81.1
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 82.8
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 81.7
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 81.7
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.2e-73 280.0 169 81.7
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 1.2e-73 280.0 186 76.3
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.5e-73 279.6 169 81.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 2.0e-73 279.3 166 81.9
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.0e-73 279.3 169 81.1
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 2.0e-73 279.3 169 81.7
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 2.0e-73 279.3 169 80.5
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 3.4e-73 278.5 167 85.0
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 4.5e-73 278.1 167 83.2
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.0e-72 276.9 169 81.1
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 1.0e-72 276.9 182 76.4
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 1.0e-72 276.9 169 79.9
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.3e-72 276.6 169 80.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.9e-72 275.4 169 79.3
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 5.0e-72 274.6 169 78.7
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 8.5e-72 273.9 169 78.7
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.5e-72 273.9 183 77.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 8.5e-72 273.9 183 77.0
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-71 273.5 183 76.5
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 1.1e-71 273.5 207 69.6
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.4e-71 273.1 192 72.9
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.4e-71 273.1 169 81.7
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.5e-71 272.3 169 78.7
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 2.5e-71 272.3 169 82.2
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.2e-71 271.6 169 78.7
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 4.2e-71 271.6 169 78.7
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 9.4e-71 270.4 169 77.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 9.4e-71 270.4 169 78.1
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 1.2e-70 270.0 169 78.7
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.7e-70 268.1 167 77.8
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 6.1e-70 267.7 167 77.8
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 7.9e-70 267.3 169 77.5
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 7.9e-70 267.3 149 87.2
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 2.3e-69 265.8 169 79.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.3e-69 265.8 169 79.3
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 3.0e-69 265.4 166 81.3
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.9e-69 265.0 226 63.7
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.9e-69 265.0 158 84.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 6.7e-69 264.2 214 66.4
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-68 263.1 169 76.3
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.0e-68 262.7 169 76.3
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 2.6e-68 262.3 169 76.3
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 2.6e-68 262.3 149 85.2
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.3e-68 261.9 158 83.5
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 7.4e-68 260.8 145 86.2
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.7e-67 259.6 197 67.5
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 1.7e-67 259.6 149 84.6
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.7e-67 259.6 169 73.4
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.2e-67 259.2 169 72.2
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 2.2e-67 259.2 149 83.9
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 4.8e-67 258.1 168 78.0
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 6.3e-67 257.7 149 82.6
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.4e-66 256.5 169 72.2
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 2.4e-66 255.8 167 72.5
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 7.0e-66 254.2 153 81.0
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.5e-65 253.1 153 82.4
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 3.5e-65 251.9 148 81.8
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 4.5e-65 251.5 147 83.0
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 7.7e-65 250.8 177 75.1
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.2e-64 249.2 143 83.9
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 1.1e-63 246.9 167 71.3
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 2.5e-63 245.7 150 78.7
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 1.2e-62 243.4 239 57.3
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 8.0e-62 240.7 167 73.7
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.0e-61 240.4 168 70.8
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 2.0e-60 236.1 170 75.9
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 7.4e-60 234.2 149 75.8
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 9.7e-60 233.8 149 77.2
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 1.4e-58 229.9 156 75.0
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 9.1e-58 227.3 149 76.5
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 7.7e-57 224.2 124 91.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.2e-56 222.6 152 72.4
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 2.2e-56 222.6 124 83.1
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 2.9e-56 222.2 126 81.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 3.2e-55 218.8 123 82.9
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 5.5e-55 218.0 124 87.1
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.1e-54 216.1 169 69.2
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 3.6e-54 215.3 166 68.7
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 3.6e-54 215.3 157 68.2
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 6.1e-54 214.5 121 87.6
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 8.0e-54 214.2 121 86.8
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 8.0e-54 214.2 121 86.8
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.8e-53 213.0 121 86.0
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.3e-53 212.6 132 79.5
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 3.0e-53 212.2 168 65.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 3.0e-53 212.2 191 57.6
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 8.8e-53 210.7 131 84.7
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 2.6e-52 209.1 143 75.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.3e-48 196.8 157 70.1
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 2.9e-48 195.7 155 65.8
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.9e-47 193.0 136 69.1
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.8e-45 186.4 141 69.5
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 6.3e-43 177.9 106 84.9
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 8.6e-40 167.5 90 88.9
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.1e-38 162.9 90 84.4
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 6.8e-37 157.9 94 87.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.7e-33 146.0 112 65.2
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 2.7e-33 146.0 83 88.0
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.2e-28 130.6 87 73.6
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 4.9e-27 125.2 99 63.6
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-26 123.6 82 74.4
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.4e-26 122.9 73 86.3
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 5.4e-26 121.7 103 63.1
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.7e-22 108.6 74 71.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 8.3e-19 97.8 64 75.0
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-18 97.1 65 76.9
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 2.4e-18 96.3 75 64.0
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 4.1e-18 95.5 159 39.0
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 7.0e-18 94.7 78 56.4
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 3.5e-17 92.4 130 39.2
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 3.3e-15 85.9 49 87.8
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 3.3e-15 85.9 49 87.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.1e-13 80.9 111 52.3
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 8.3e-11 71.2 159 32.7
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.4e-10 69.7 44 68.2


User provided reference genes

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