Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 1.1e-278 962.6 467 100.0
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.7e-226 789.3 483 80.3
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 2.8e-226 788.5 483 81.0
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 8.2e-226 786.9 483 79.9
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 3.5e-224 781.6 486 79.0
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.9e-224 780.8 483 79.1
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 5.5e-222 774.2 484 79.5
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 7.2e-222 773.9 482 79.0
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 9.4e-222 773.5 482 78.8
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 1.2e-221 773.1 484 79.5
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.2e-221 773.1 482 78.8
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 3.6e-221 771.5 484 78.5
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 2.3e-220 768.8 482 78.4
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 6.7e-220 767.3 484 77.9
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 6.7e-220 767.3 484 78.9
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 8.8e-220 766.9 484 79.1
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 4.4e-219 764.6 486 77.6
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 4.4e-219 764.6 481 78.2
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 5.7e-219 764.2 484 78.7
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.3e-218 763.1 424 86.3
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 1.7e-218 762.7 482 77.2
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 1.7e-218 762.7 484 78.1
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 1.7e-218 762.7 482 78.2
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 2.8e-218 761.9 481 78.2
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 3.7e-218 761.5 484 78.3
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 6.3e-218 760.8 486 77.2
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 1.4e-217 759.6 486 76.5
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 4.1e-217 758.1 484 76.9
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 9.1e-217 756.9 480 77.7
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 1.2e-216 756.5 480 78.3
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 4.5e-216 754.6 485 76.9
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 4.5e-216 754.6 483 76.6
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 7.7e-216 753.8 482 76.6
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 1.3e-215 753.1 485 75.7
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 1.7e-215 752.7 485 77.3
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 2.2e-215 752.3 484 76.9
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.9e-215 751.9 483 76.4
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 5.0e-215 751.1 483 76.8
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 5.0e-215 751.1 484 77.1
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 5.0e-215 751.1 485 77.3
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 6.5e-215 750.7 474 77.4
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 8.5e-215 750.4 482 76.3
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 8.5e-215 750.4 483 77.6
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 1.1e-214 750.0 483 76.8
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.5e-214 749.6 483 76.8
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 1.5e-214 749.6 485 76.3
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 2.5e-214 748.8 482 75.7
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 3.2e-214 748.4 479 77.7
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 4.2e-214 748.0 483 76.6
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 4.2e-214 748.0 483 76.4
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 5.5e-214 747.7 486 76.3
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 7.2e-214 747.3 485 76.9
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 7.2e-214 747.3 485 75.7
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.6e-213 746.1 482 76.6
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 2.1e-213 745.7 478 75.5
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 2.7e-213 745.3 479 77.7
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 2.7e-213 745.3 476 77.3
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 3.6e-213 745.0 482 76.3
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 6.1e-213 744.2 490 76.5
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 6.1e-213 744.2 490 76.5
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 1.0e-212 743.4 488 75.4
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 1.0e-212 743.4 480 76.5
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 1.0e-212 743.4 489 74.8
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.0e-212 743.4 489 74.8
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 5.2e-212 741.1 484 75.2
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 6.8e-212 740.7 484 75.0
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 1.5e-211 739.6 478 76.2
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 3.4e-211 738.4 480 76.0
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.4e-211 738.4 490 75.7
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 4.4e-211 738.0 393 87.5
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 9.8e-211 736.9 483 75.2
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 2.8e-210 735.3 480 76.2
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 3.7e-210 734.9 484 74.6
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 3.7e-210 734.9 485 74.6
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 4.8e-210 734.6 480 75.8
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 6.3e-210 734.2 479 74.9
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 6.3e-210 734.2 478 75.1
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 8.3e-210 733.8 395 86.6
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 8.3e-210 733.8 395 86.6
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 8.3e-210 733.8 480 75.6
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 1.4e-209 733.0 469 76.5
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.4e-209 733.0 395 86.3
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 2.4e-209 732.3 477 74.8
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 2.4e-209 732.3 478 76.2
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 3.1e-209 731.9 476 75.4
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 5.4e-209 731.1 392 86.5
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 4.5e-208 728.0 482 74.5
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 1.7e-207 726.1 478 75.5
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 1.7e-207 726.1 515 71.1
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 3.8e-207 724.9 392 86.0
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 3.8e-207 724.9 409 82.4
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 8.6e-207 723.8 392 85.7
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 8.6e-207 723.8 472 74.8
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 1.1e-206 723.4 392 85.5
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 1.9e-206 722.6 392 85.5
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 1.9e-206 722.6 479 73.9
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 3.3e-206 721.8 393 85.0
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 7.8e-200 700.7 442 76.7
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 2.8e-197 692.2 488 71.9
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 1.7e-194 682.9 420 77.1
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 5.4e-193 677.9 399 77.7
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 7.8e-192 674.1 443 74.5
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 6.6e-191 671.0 395 78.0
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 6.2e-189 664.5 389 78.4
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 4.0e-188 661.8 392 80.1
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 3.7e-186 655.2 472 68.4
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 6.0e-176 621.3 392 73.0
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 1.9e-174 616.3 481 67.6
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.1e-173 612.8 430 71.2
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 2.7e-168 595.9 391 68.3
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.0e-167 594.0 389 68.1
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 1.1e-161 573.9 384 74.2
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 7.6e-155 551.2 289 90.7
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 4.6e-152 542.0 289 89.3
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 8.7e-135 484.6 325 72.0
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.2e-133 479.9 317 72.6
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.9e-105 387.1 237 77.2
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 5.9e-99 365.5 190 86.3
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.5e-81 307.0 172 83.1
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.0e-62 244.2 135 87.4
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.4e-60 237.3 196 60.2
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.0e-58 231.9 139 80.6
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 5.1e-58 229.6 130 80.8
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 1.7e-50 204.5 140 75.0
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 9.9e-38 162.2 94 84.0
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 1.6e-32 144.8 105 67.6
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 5.3e-31 139.8 158 50.6
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 4.6e-11 73.6 59 57.6
Hund14215 Selenicereus undatus HOM05D000776 ORTHO05D001624 1.8e-10 71.6 283 26.9
Pp3c3_1820 Physcomitrium patens HOM05D000776 ORTHO05D001624 5.7e-09 66.6 160 30.6
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 2.8e-08 64.3 153 28.8
SEGI_37678 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 1.8e-07 61.6 155 29.0
SEGI_05924 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 4.1e-07 60.5 159 27.7
Pp3c13_5280 Physcomitrium patens HOM05D000776 ORTHO05D001624 5.3e-07 60.1 132 31.1
Haze_27503 Corylus avellana HOM05D000776 ORTHO05D002281 1.2e-06 58.9 158 27.8
SMO358G0402 Selaginella moellendorffii HOM05D000776 ORTHO05D001624 1.5e-06 58.5 134 28.4
CiPaw.11G120200 Carya illinoinensis HOM05D000776 ORTHO05D001624 2.6e-06 57.8 135 27.4


User provided reference genes

Program Settings