Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09168 Striga asiatica HOM05D006035 ORTHO05D007155 1.0e-64 250.0 132 100.0
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 1.4e-13 80.1 75 53.3
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 5.3e-13 78.2 72 51.4
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 1.3e-11 73.6 103 42.7
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 2.9e-11 72.4 97 42.3
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 5.0e-11 71.6 73 50.7
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 5.0e-11 71.6 73 50.7
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 5.0e-11 71.6 74 45.9
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 8.5e-11 70.9 75 50.7
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 7.2e-10 67.8 103 37.9
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 2.7e-09 65.9 103 35.9
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 3.6e-09 65.5 73 45.2
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 4.7e-09 65.1 72 48.6
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 4.7e-09 65.1 95 35.8
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 8.0e-09 64.3 72 47.2
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 8.0e-09 64.3 74 45.9
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 8.0e-09 64.3 74 47.3
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.0e-08 63.9 76 40.8
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 1.0e-08 63.9 74 47.3
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 1.0e-08 63.9 103 40.8
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 1.4e-08 63.5 78 43.6
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 1.8e-08 63.2 75 48.0
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 2.3e-08 62.8 80 45.0
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 4.0e-08 62.0 96 38.5
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 4.0e-08 62.0 110 37.3
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 5.2e-08 61.6 73 45.2
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 5.2e-08 61.6 73 45.2
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 5.2e-08 61.6 73 45.2
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 5.2e-08 61.6 78 42.3
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 6.7e-08 61.2 98 38.8
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 6.7e-08 61.2 74 41.9
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 8.8e-08 60.8 75 45.3
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 8.8e-08 60.8 81 42.0
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 1.2e-07 60.5 81 39.5
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 1.2e-07 60.5 72 47.2
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 1.2e-07 60.5 72 47.2
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 1.2e-07 60.5 78 43.6
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 1.5e-07 60.1 77 41.6
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 1.5e-07 60.1 72 45.8
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 2.0e-07 59.7 76 42.1
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.0e-07 59.7 98 38.8
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 2.0e-07 59.7 72 45.8
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 2.6e-07 59.3 105 39.0
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 2.6e-07 59.3 89 37.1
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 2.6e-07 59.3 75 44.0
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 2.6e-07 59.3 73 41.1
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 2.6e-07 59.3 72 41.7
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 4.4e-07 58.5 73 43.8
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 4.4e-07 58.5 81 40.7
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 4.4e-07 58.5 73 41.1
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 7.5e-07 57.8 73 41.1
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 9.7e-07 57.4 72 40.3
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 1.3e-06 57.0 76 44.7
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 1.3e-06 57.0 99 35.4
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 1.3e-06 57.0 73 45.2
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 1.3e-06 57.0 101 32.7
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 1.7e-06 56.6 72 43.1
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 2.2e-06 56.2 76 39.5
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 2.2e-06 56.2 76 39.5
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 2.2e-06 56.2 76 39.5
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 2.2e-06 56.2 76 39.5
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 2.2e-06 56.2 76 39.5
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 2.2e-06 56.2 76 39.5
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 2.2e-06 56.2 76 42.1
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 2.2e-06 56.2 79 39.2
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 2.2e-06 56.2 72 43.1
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 2.8e-06 55.8 72 37.5
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 3.7e-06 55.5 93 36.6
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 4.8e-06 55.1 72 38.9
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 4.8e-06 55.1 73 43.8
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 6.3e-06 54.7 75 42.7
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 6.3e-06 54.7 72 41.7
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 6.3e-06 54.7 72 43.1
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 8.2e-06 54.3 72 37.5
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 8.2e-06 54.3 72 41.7
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 8.2e-06 54.3 72 40.3


User provided reference genes

Program Settings