Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold20G09128 Striga asiatica HOM05D006001 ORTHO05D006714 2.8e-174 615.1 300 100.0
SGA_v2.0_scaffold24G10238 Striga asiatica HOM05D006001 ORTHO05D006714 5.1e-152 541.2 300 89.0
Migut.C00706 Erythranthe guttata HOM05D006001 ORTHO05D006714 4.6e-52 209.1 342 43.3
SalBow7G4402 Salvia bowleyana HOM05D006001 ORTHO05D006714 1.9e-42 177.2 390 36.7
Dinv42605 Davidia involucrata HOM05D006001 ORTHO05D006714 1.5e-39 167.5 339 39.8
Oeu063699.1 Olea europaea HOM05D006001 ORTHO05D006714 2.9e-38 163.3 332 39.2
Peaxi162Scf00160g00103 Petunia axillaris HOM05D006001 ORTHO05D006714 3.3e-34 149.8 382 35.6
Nitab4.5_0000354g0120 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.4e-32 144.4 357 35.0
GSVIVG01009188001 Vitis vinifera HOM05D006001 ORTHO05D006714 3.1e-32 143.3 344 35.8
Oeu034401.1 Olea europaea HOM05D006001 ORTHO05D006714 6.8e-32 142.1 361 34.9
CAN.G1700.2 Capsicum annuum HOM05D006001 ORTHO05D006714 4.4e-31 139.4 363 34.7
unitig_578.g16728 Utricularia gibba HOM05D006001 ORTHO05D006714 9.2e-29 131.7 327 34.3
BcaC09g50862 Brassica carinata HOM05D006001 ORTHO05D006714 6.0e-28 129.0 334 34.1
PGSC0003DMG400002050 Solanum tuberosum HOM05D006001 ORTHO05D006714 1.3e-27 127.9 367 33.5
A01p15870 Brassica napus HOM05D002298 ORTHO05D006714 1.7e-27 127.5 333 34.8
BolC1t01909H Brassica oleracea HOM05D002298 ORTHO05D006714 3.0e-27 126.7 336 33.9
C01p19810 Brassica napus HOM05D002298 ORTHO05D006714 5.1e-27 125.9 336 33.9
BraA01t01521Z Brassica rapa HOM05D002298 ORTHO05D006714 6.6e-27 125.6 336 34.2
DCAR_023481 Daucus carota HOM05D006001 ORTHO05D006714 6.6e-27 125.6 416 33.4
Sopen12g030020 Solanum pennellii HOM05D006001 ORTHO05D006714 2.8e-25 120.2 366 32.8
TAR381G0479 Trochodendron aralioides HOM05D006001 ORTHO05D006714 1.1e-24 118.2 316 33.9
Carub.0007s1657 Capsella rubella HOM05D006001 ORTHO05D006714 1.4e-24 117.9 337 36.2
Eucgr.L02666 Eucalyptus grandis HOM05D006001 ORTHO05D006714 5.2e-24 115.9 334 33.8
QL09p017955 Quercus lobata HOM05D006001 ORTHO05D006714 8.9e-24 115.2 350 32.3
Sc04g0007160 Simmondsia chinensis HOM05D006001 ORTHO05D006714 8.9e-24 115.2 305 35.7
Sopen04g030170 Solanum pennellii HOM05D006001 ORTHO05D006714 8.9e-24 115.2 305 37.0
Eucgr.H00032 Eucalyptus grandis HOM05D006001 ORTHO05D006714 2.6e-23 113.6 331 33.8
Lsat_1_v5_gn_3_133380 Lactuca sativa HOM05D006001 ORTHO05D006714 4.4e-23 112.8 338 34.6
PGSC0003DMG400009339 Solanum tuberosum HOM05D006001 ORTHO05D006714 5.8e-23 112.5 305 38.0
Cc00_g15770 Coffea canephora HOM05D006001 ORTHO05D006714 1.3e-22 111.3 354 33.1
Solyc04g076410.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 1.3e-22 111.3 305 36.4
CSS0018086 Camellia sinensis var. sinensis HOM05D006001 ORTHO05D006714 3.8e-22 109.8 404 31.7
BcaC06g32880 Brassica carinata HOM05D006001 ORTHO05D006714 1.9e-21 107.5 306 33.7
Thecc.08G071800 Theobroma cacao HOM05D006001 ORTHO05D006714 2.4e-21 107.1 377 32.6
A03p55330 Brassica napus HOM05D006001 ORTHO05D006714 5.4e-21 105.9 335 32.8
CiPaw.03G148200 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.2e-20 104.8 360 31.9
CsaV3_2G036230 Cucumis sativus L. HOM05D006001 ORTHO05D006714 1.6e-20 104.4 317 33.8
AT4G24500 Arabidopsis thaliana HOM05D006001 ORTHO05D006714 2.1e-20 104.0 329 33.7
arahy.Tifrunner.gnm1.ann1.5459VI Arachis hypogaea HOM05D006001 ORTHO05D006714 2.7e-20 103.6 323 33.1
HanXRQChr03g0093751 Helianthus annuus HOM05D006001 ORTHO05D006714 3.5e-20 103.2 324 31.2
QL12p023212 Quercus lobata HOM05D006001 ORTHO05D006714 3.5e-20 103.2 343 32.9
MBI16_g12475_MAGBIO Magnolia biondii HOM05D006001 ORTHO05D006714 4.6e-20 102.8 328 33.5
CANSAT11G1699 Cannabis sativa HOM05D006001 ORTHO05D006714 6.0e-20 102.4 311 33.4
MELO3C021835.2 Cucumis melo HOM05D006001 ORTHO05D006714 6.0e-20 102.4 341 33.7
Glyma.02G215100 Glycine max HOM05D006001 ORTHO05D006714 6.0e-20 102.4 349 32.7
Manes.18G058066 Manihot esculenta HOM05D006001 ORTHO05D006714 7.8e-20 102.1 345 31.9
Sp7g22490 Schrenkiella parvula HOM05D006001 ORTHO05D006714 7.8e-20 102.1 328 32.0
CARHR231890 Cardamine hirsuta HOM05D006001 ORTHO05D006714 1.0e-19 101.7 338 32.2
CiPaw.07G164600 Carya illinoinensis HOM05D006001 ORTHO05D006714 1.3e-19 101.3 350 31.4
Sabra02G0088000 Salix brachista HOM05D006001 ORTHO05D006714 1.3e-19 101.3 342 31.9
LjContig00408g0013719 Lotus japonicus HOM05D006001 ORTHO05D006714 1.7e-19 100.9 362 30.4
Potri.002G111500 Populus trichocarpa HOM05D006001 ORTHO05D006714 1.7e-19 100.9 354 32.8
Haze_22467 Corylus avellana HOM05D006001 ORTHO05D006714 1.1e-18 98.2 373 30.8
Cpa.g.c29936.2 Carica papaya HOM05D006001 ORTHO05D006714 1.5e-18 97.8 383 30.5
Rhsim07G0212300 Rhododendron simsii HOM05D006001 ORTHO05D006714 3.3e-18 96.7 417 30.2
Duzib106G1137 Durio zibethinus HOM05D006001 ORTHO05D006714 4.3e-18 96.3 370 30.5
Nn6g34170 Nelumbo nucifera HOM05D006001 ORTHO05D006714 5.6e-18 95.9 351 32.8
Potri.005G153300 Populus trichocarpa HOM05D006001 ORTHO05D006714 5.6e-18 95.9 336 30.7
PGR042G0630 Punica granatum HOM05D006001 ORTHO05D006714 5.6e-18 95.9 335 31.6
Ciclev10001506m.g Citrus clementina HOM05D006001 ORTHO05D006714 1.3e-17 94.7 381 31.5
MELO3C008828.2 Cucumis melo HOM05D006001 ORTHO05D006714 1.3e-17 94.7 340 32.1
Gorai.009G346500 Gossypium raimondii HOM05D006001 ORTHO05D006714 1.3e-17 94.7 342 31.6
AL7G28720 Arabidopsis lyrata HOM05D006001 ORTHO05D006714 2.1e-17 94.0 318 32.4
Cfa013804 Carpinus fangiana HOM05D006001 ORTHO05D006714 2.1e-17 94.0 366 30.3
Medtr5g066450 Medicago truncatula HOM05D006001 ORTHO05D006714 2.8e-17 93.6 333 32.7
TWI12G0152 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 2.8e-17 93.6 316 31.6
TWI56G0486 Tripterygium wilfordii HOM05D006001 ORTHO05D006714 2.8e-17 93.6 365 31.0
Thhalv10025760m.g Eutrema salsugineum HOM05D006001 ORTHO05D006714 3.6e-17 93.2 326 33.1
Atru.chr13.1002 Acer truncatum HOM05D006001 ORTHO05D006714 6.2e-17 92.4 362 30.1
BolC7t45854H Brassica oleracea HOM05D006001 ORTHO05D006714 8.1e-17 92.0 333 31.2
PSO210G5625 Papaver somniferum HOM05D006001 ORTHO05D006714 8.1e-17 92.0 310 32.6
Gohir.A05G320600 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.1e-16 91.7 343 30.9
BraA03t14592Z Brassica rapa HOM05D006001 ORTHO05D006714 1.8e-16 90.9 337 32.0
arahy.Tifrunner.gnm1.ann1.X0SJ4P Arachis hypogaea HOM05D006001 ORTHO05D006714 2.4e-16 90.5 346 31.8
ClCG09G016810 Citrullus lanatus HOM05D006001 ORTHO05D006714 6.9e-16 89.0 344 32.0
Hund26817 Selenicereus undatus HOM05D006001 ORTHO05D006714 9.0e-16 88.6 338 32.5
Gohir.D05G322800 Gossypium hirsutum HOM05D006001 ORTHO05D006714 1.2e-15 88.2 344 32.0
Aa31LG4G9600 Aethionema arabicum HOM05D006001 ORTHO05D006714 1.5e-15 87.8 344 31.1
Actinidia19626 Actinidia chinensis HOM05D006001 ORTHO05D006714 4.5e-15 86.3 385 30.9
Psat2g065160 Pisum sativum HOM05D006001 ORTHO05D006714 7.6e-15 85.5 346 30.1
Haze_22468 Corylus avellana HOM05D006001 ORTHO05D006714 1.3e-14 84.7 375 29.1
Nitab4.5_0019796g0010 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.7e-14 84.3 210 32.9
Lj4A738G22 Lonicera japonica HOM05D006001 ORTHO05D006714 2.2e-14 84.0 408 28.2
THA.LOC104806890 Tarenaya hassleriana HOM05D006001 ORTHO05D006714 2.9e-14 83.6 341 30.8
Glyma.14G182400 Glycine max HOM05D006001 ORTHO05D006714 4.9e-14 82.8 365 28.8
Ca_05452_v3 Cicer arietinum L. HOM05D006001 ORTHO05D006714 1.9e-13 80.9 327 28.7
PSO170G4643 Papaver somniferum HOM05D006001 ORTHO05D006714 1.9e-13 80.9 322 31.7
HPP92_021096 Vanilla planifolia HOM05D006001 ORTHO05D006714 2.4e-13 80.5 324 32.1
Duzib128G1071 Durio zibethinus HOM05D006001 ORTHO05D006714 3.2e-13 80.1 379 29.3
ECA240G2279 Erigeron canadensis HOM05D006001 ORTHO05D006714 3.2e-13 80.1 358 27.7
COL.COLO4_35255 Corchorus olitorius HOM05D006001 ORTHO05D006714 3.5e-12 76.6 356 30.6
Solyc12g087990.3 Solanum lycopersicum HOM05D006001 ORTHO05D006714 6.0e-12 75.9 210 36.2
TAR376G0788 Trochodendron aralioides HOM05D006001 ORTHO05D006714 5.1e-11 72.8 224 31.2
Nitab4.5_0000131g0110 Nicotiana tabacum HOM05D006001 ORTHO05D006714 1.1e-10 71.6 301 29.2
Zm00001eb089620 Zea mays HOM05D034158 ORTHO05D037074 1.1e-10 71.6 318 32.1
Sed0021215 Sechium edule HOM05D006001 ORTHO05D006714 1.9e-10 70.9 129 38.8
Aqoxy5G01371 Aquilegia oxysepala HOM05D006001 ORTHO05D006714 4.3e-10 69.7 422 26.8
TPR.G34712 Trifolium pratense HOM05D006001 ORTHO05D006714 5.6e-10 69.3 376 27.4
Prupe.1G533200 Prunus persica HOM05D006001 ORTHO05D006714 9.6e-10 68.6 420 27.6
HanXRQChr13g0425671 Helianthus annuus HOM05D006001 ORTHO05D006714 2.1e-09 67.4 90 42.2
Nn5g29866 Nelumbo nucifera HOM05D006001 ORTHO05D006714 2.8e-09 67.0 288 30.6
VMungo1127G1493 Vigna mungo HOM05D006001 ORTHO05D006714 6.2e-09 65.9 132 37.1
Lj6g0019377 Lotus japonicus HOM05D006001 ORTHO05D006714 2.4e-08 63.9 264 31.8
Sed0021655 Sechium edule HOM05D006001 ORTHO05D006714 5.3e-08 62.8 101 40.6
CDE06G2159 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.0e-07 60.8 89 39.3
HanXRQChr13g0425801 Helianthus annuus HOM05D006001 ORTHO05D006714 2.6e-07 60.5 76 46.1
Pp3c22_17340 Physcomitrium patens HOM05D006001 ORTHO05D006714 5.8e-07 59.3 262 30.9
SEGI_15482 Sequoiadendron giganteum HOM05D006001 ORTHO05D006714 9.9e-07 58.5 205 34.1
C07p53620 Brassica napus HOM05D006001 ORTHO05D006714 1.7e-06 57.8 214 36.0
CDE04G0496 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 1.7e-06 57.8 308 30.8
CDE06G1720 Ceratophyllum demersum HOM05D006001 ORTHO05D006714 2.2e-06 57.4 163 35.6
Zm00001eb418930 Zea mays HOM05D034158 ORTHO05D037074 2.9e-06 57.0 212 34.0
HanXRQChr13g0425001 Helianthus annuus HOM05D006001 ORTHO05D006714 3.8e-06 56.6 79 46.8
DCAR_002596 Daucus carota HOM05D006001 ORTHO05D006714 4.9e-06 56.2 159 35.8
Os02g0510300 Oryza sativa ssp. japonica HOM05D034158 ORTHO05D037074 4.9e-06 56.2 220 30.9
Phvul.008G182500 Phaseolus vulgaris HOM05D006001 ORTHO05D006714 8.4e-06 55.5 420 25.5
SHI11238 Sapria himalayana HOM05D006001 ORTHO05D006714 8.4e-06 55.5 74 45.9


User provided reference genes

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