Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold207G41883 Striga asiatica HOM05D003097 ORTHO05D003437 2.2e-89 332.4 186 100.0
SGA_v2.0_scaffold80G25871 Striga asiatica HOM05D003097 ORTHO05D003437 7.9e-63 244.2 186 70.4
SalBow3G2226 Salvia bowleyana HOM05D003097 ORTHO05D003437 4.1e-59 231.9 189 72.0
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 8.2e-52 207.6 185 64.3
Migut.N01282 Erythranthe guttata HOM05D003097 ORTHO05D003437 6.5e-49 198.0 189 64.0
Hma1.2p1_1385F.1_g279750 Hydrangea macrophylla HOM05D003097 ORTHO05D003437 2.8e-44 182.6 191 57.6
Oeu002954.1 Olea europaea HOM05D003097 ORTHO05D003437 6.3e-44 181.4 189 61.9
Thecc.02G067000 Theobroma cacao HOM05D003097 ORTHO05D003437 1.1e-43 180.6 187 57.2
Gohir.A03G203100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 1.8e-43 179.9 187 56.7
Gohir.D02G224400 Gossypium hirsutum HOM05D003097 ORTHO05D003437 1.8e-43 179.9 187 56.7
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 2.4e-43 179.5 187 56.7
Nitab4.5_0000980g0160 Nicotiana tabacum HOM05D003097 ORTHO05D003437 5.3e-43 178.3 190 61.1
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 7.0e-43 177.9 186 60.2
Lj5C185T3 Lonicera japonica HOM05D003097 ORTHO05D003437 3.5e-42 175.6 185 56.8
Nitab4.5_0000283g0080 Nicotiana tabacum HOM05D003097 ORTHO05D003437 4.5e-42 175.3 190 59.5
Manes.05G200500 Manihot esculenta HOM05D003097 ORTHO05D003437 1.3e-41 173.7 189 57.1
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 2.2e-41 172.9 187 56.1
Peaxi162Scf00684g00019 Petunia axillaris HOM05D003097 ORTHO05D003437 2.2e-41 172.9 185 60.5
COL.COLO4_17256 Corchorus olitorius HOM05D003097 ORTHO05D003437 2.9e-41 172.6 187 55.6
Peaxi162Scf00362g01043 Petunia axillaris HOM05D003097 ORTHO05D003437 3.8e-41 172.2 190 58.9
Atru.chr5.3226 Acer truncatum HOM05D003097 ORTHO05D003437 6.5e-41 171.4 187 56.1
Nitab4.5_0000128g0360 Nicotiana tabacum HOM05D003097 ORTHO05D003437 1.1e-40 170.6 187 55.1
Nitab4.5_0007006g0010 Nicotiana tabacum HOM05D003097 ORTHO05D003437 2.5e-40 169.5 181 57.5
CANSAT25G1721 Cannabis sativa HOM05D003097 ORTHO05D003437 5.5e-40 168.3 186 53.8
PGSC0003DMG400001594 Solanum tuberosum HOM05D003097 ORTHO05D003437 5.5e-40 168.3 187 60.4
Cc02_g16520 Coffea canephora HOM05D003097 ORTHO05D003437 7.2e-40 167.9 190 57.4
RcHm_v2.0_Chr6g0245181 Rosa chinensis HOM05D003097 ORTHO05D003437 1.2e-39 167.2 189 57.7
Actinidia32084 Actinidia chinensis HOM05D003097 ORTHO05D003437 2.1e-39 166.4 190 60.0
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 4.7e-39 165.2 186 54.3
Cfa005183 Carpinus fangiana HOM05D003097 ORTHO05D003437 1.4e-38 163.7 189 52.4
CAN.G588.25 Capsicum annuum HOM05D003097 ORTHO05D003437 4.0e-38 162.2 190 56.8
Rhsim05G0063200 Rhododendron simsii HOM05D001403 ORTHO05D001313 5.2e-38 161.8 187 58.3
QL11p047530 Quercus lobata HOM05D003097 ORTHO05D003437 8.8e-38 161.0 148 60.8
Prupe.8G160700 Prunus persica HOM05D003097 ORTHO05D003437 1.3e-36 157.1 189 57.1
FAN27G3375 Fragaria x ananassa HOM05D003097 ORTHO05D003437 3.7e-36 155.6 188 56.4
FAN20G1328 Fragaria x ananassa HOM05D003097 ORTHO05D003437 6.3e-36 154.8 188 56.4
FvH4_2g02000 Fragaria vesca HOM05D003097 ORTHO05D003437 8.3e-36 154.5 188 55.9
Potri.004G168100 Populus trichocarpa HOM05D003097 ORTHO05D003437 1.8e-35 153.3 148 59.5
MD05G1115800 Malus domestica HOM05D003097 ORTHO05D003437 7.0e-35 151.4 187 57.8
FAN24G0689 Fragaria x ananassa HOM05D003097 ORTHO05D003437 9.1e-35 151.0 188 55.3
Sabra04G0112700 Salix brachista HOM05D003097 ORTHO05D003437 1.6e-34 150.2 184 54.9
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 2.0e-34 149.8 162 59.3
DCAR_022957 Daucus carota HOM05D003097 ORTHO05D003437 3.5e-34 149.1 182 51.6
Medtr4g075480 Medicago truncatula HOM05D003097 ORTHO05D003437 5.9e-34 148.3 189 55.0
CSS0029047 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 7.7e-34 147.9 141 62.4
Solyc01g111130.4 Solanum lycopersicum HOM05D003097 ORTHO05D003437 1.0e-33 147.5 187 55.1
TPR.G17152 Trifolium pratense HOM05D003097 ORTHO05D003437 1.7e-33 146.7 186 53.2
Nn5g29092 Nelumbo nucifera HOM05D003097 ORTHO05D003437 3.8e-33 145.6 192 51.6
Sopen01g053190 Solanum pennellii HOM05D003097 ORTHO05D003437 3.8e-33 145.6 187 54.5
Cpa.g.sc17.155 Carica papaya HOM05D003097 ORTHO05D003437 6.5e-33 144.8 189 54.5
Haze_02198 Corylus avellana HOM05D003097 ORTHO05D003437 6.5e-33 144.8 189 50.3
vmacro17382 Vaccinium macrocarpon HOM05D003097 ORTHO05D003437 1.5e-32 143.7 188 55.3
Actinidia31235 Actinidia chinensis HOM05D003097 ORTHO05D003437 3.2e-32 142.5 163 62.0
arahy.Tifrunner.gnm1.ann1.4M6RGX Arachis hypogaea HOM05D003097 ORTHO05D003437 5.5e-32 141.7 187 49.2
arahy.Tifrunner.gnm1.ann1.WD5AW4 Arachis hypogaea HOM05D003097 ORTHO05D003437 5.5e-32 141.7 187 49.2
Psat7g178360 Pisum sativum HOM05D003097 ORTHO05D003437 5.5e-32 141.7 190 51.6
Ca_19000_v3 Cicer arietinum L. HOM05D003097 ORTHO05D003437 7.2e-32 141.4 189 51.3
Lj3g0016767 Lotus japonicus HOM05D003097 ORTHO05D003437 7.2e-32 141.4 190 50.5
Duzib052G0688 Durio zibethinus HOM05D003097 ORTHO05D003437 2.1e-31 139.8 187 48.1
CsaV3_2G015700 Cucumis sativus L. HOM05D003097 ORTHO05D003437 2.7e-31 139.4 183 53.0
FAN15G0773 Fragaria x ananassa HOM05D003097 ORTHO05D003437 1.4e-30 137.1 162 58.0
HanXRQChr17g0553701 Helianthus annuus HOM05D003097 ORTHO05D003437 1.8e-30 136.7 188 48.4
PGR042G1899 Punica granatum HOM05D003097 ORTHO05D003437 6.8e-30 134.8 193 47.7
Glyma.08G148500 Glycine max HOM05D003097 ORTHO05D003437 2.0e-29 133.3 141 53.9
Ciclev10028783m.g Citrus clementina HOM05D003097 ORTHO05D003437 2.6e-29 132.9 187 52.4
GSVIVG01024084001 Vitis vinifera HOM05D003097 ORTHO05D003437 4.4e-29 132.1 191 50.8
TAR628G1174 Trochodendron aralioides HOM05D003097 ORTHO05D003437 5.7e-29 131.7 182 51.6
CiPaw.08G131400 Carya illinoinensis HOM05D003097 ORTHO05D003437 1.7e-28 130.2 186 48.9
Lalb_Chr01g0001311 Lupinus albus HOM05D003097 ORTHO05D003437 4.8e-28 128.6 189 52.4
Phvul.011G178100 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 1.1e-27 127.5 150 52.0
VMungo1127G0811 Vigna mungo HOM05D003097 ORTHO05D003437 2.4e-27 126.3 190 45.3
GSVIVG01018777001 Vitis vinifera HOM05D003097 ORTHO05D003437 2.4e-27 126.3 193 51.3
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 3.1e-27 125.9 183 51.9
MD02G1132000 Malus domestica HOM05D003097 ORTHO05D003437 3.1e-27 125.9 183 48.6
CiPaw.06G125400 Carya illinoinensis HOM05D003097 ORTHO05D003437 5.4e-27 125.2 149 50.3
TAR376G0456 Trochodendron aralioides HOM05D003097 ORTHO05D003437 5.4e-27 125.2 192 51.0
ECA233G5410 Erigeron canadensis HOM05D003097 ORTHO05D003437 9.1e-27 124.4 190 47.4
QL06p032886 Quercus lobata HOM05D003097 ORTHO05D003437 9.1e-27 124.4 184 49.5
MELO3C007905.2 Cucumis melo HOM05D003097 ORTHO05D003437 1.6e-26 123.6 183 53.0
Prupe.7G168500 Prunus persica HOM05D003097 ORTHO05D003437 1.6e-26 123.6 183 47.0
AUR62010097 Chenopodium quinoa HOM05D003097 ORTHO05D003437 2.0e-26 123.2 183 47.5
AUR62013093 Chenopodium quinoa HOM05D003097 ORTHO05D003437 4.5e-26 122.1 182 48.4
ClCG01G020320 Citrullus lanatus HOM05D003097 ORTHO05D003437 4.5e-26 122.1 183 51.4
Lalb_Chr19g0139511 Lupinus albus HOM05D003097 ORTHO05D003437 7.7e-26 121.3 189 47.1
Dinv40090 Davidia involucrata HOM05D003097 ORTHO05D003437 1.0e-25 120.9 184 48.9
FvH4_1g11770 Fragaria vesca HOM05D003097 ORTHO05D003437 1.3e-25 120.6 184 47.8
EL10Ac9g21441 Beta vulgaris HOM05D003097 ORTHO05D003437 1.7e-25 120.2 177 44.1
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 2.3e-25 119.8 191 42.4
MELO3C020781.2 Cucumis melo HOM05D003097 ORTHO05D003437 2.3e-25 119.8 183 48.6
CsaV3_6G047120 Cucumis sativus L. HOM05D003097 ORTHO05D003437 2.3e-25 119.8 183 50.8
FAN26G3019 Fragaria x ananassa HOM05D003097 ORTHO05D003437 2.3e-25 119.8 184 47.8
MBI09_g12954_MAGBIO Magnolia biondii HOM05D003097 ORTHO05D003437 2.3e-25 119.8 199 48.7
PSO541G5166 Papaver somniferum HOM05D003097 ORTHO05D003437 2.9e-25 119.4 192 49.5
Sed0015022 Sechium edule HOM05D003097 ORTHO05D003437 3.8e-25 119.0 137 60.6
TWI53G0815 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 3.8e-25 119.0 184 47.8
PSO675G5479 Papaver somniferum HOM05D003097 ORTHO05D003437 1.5e-24 117.1 191 49.7
FAN19G0902 Fragaria x ananassa HOM05D003097 ORTHO05D003437 2.5e-24 116.3 184 47.3
Cfa006975 Carpinus fangiana HOM05D003097 ORTHO05D003437 3.3e-24 115.9 185 45.9
Sc03g0003590 Simmondsia chinensis HOM05D003097 ORTHO05D003437 3.3e-24 115.9 185 45.4
RcHm_v2.0_Chr2g0099391 Rosa chinensis HOM05D003097 ORTHO05D003437 5.5e-24 115.2 184 47.3
Thecc.01G018200 Theobroma cacao HOM05D003097 ORTHO05D003437 5.5e-24 115.2 182 46.2
Dinv33630 Davidia involucrata HOM05D003097 ORTHO05D003437 7.2e-24 114.8 184 45.7
Thhalv10021271m.g Eutrema salsugineum HOM05D003097 ORTHO05D003437 7.2e-24 114.8 191 42.4
PGR119G0495 Punica granatum HOM05D003097 ORTHO05D003437 1.2e-23 114.0 184 44.6
FAN23G2650 Fragaria x ananassa HOM05D003097 ORTHO05D003437 2.1e-23 113.2 184 46.2
Sed0015691 Sechium edule HOM05D003097 ORTHO05D003437 3.6e-23 112.5 183 52.5
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 4.7e-23 112.1 186 47.3
FAN28G2069 Fragaria x ananassa HOM05D003097 ORTHO05D003437 4.7e-23 112.1 184 45.7
CSS0021352 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 8.0e-23 111.3 183 47.0
THA.LOC104804101 Tarenaya hassleriana HOM05D003097 ORTHO05D003437 8.0e-23 111.3 145 48.3
Hma1.2p1_0956F.1_g241270 Hydrangea macrophylla HOM05D003097 ORTHO05D003437 1.8e-22 110.2 185 45.4
COL.COLO4_21904 Corchorus olitorius HOM05D003097 ORTHO05D003437 2.3e-22 109.8 192 42.7
Atru.chr3.803 Acer truncatum HOM05D003097 ORTHO05D003437 8.9e-22 107.8 183 43.7
Aqoxy6G02341 Aquilegia oxysepala HOM05D003097 ORTHO05D003437 1.5e-21 107.1 184 41.8
Glyma.12G024400 Glycine max HOM05D003097 ORTHO05D003437 2.0e-21 106.7 179 48.0
Glyma.15G215100 Glycine max HOM05D003097 ORTHO05D003437 2.0e-21 106.7 189 42.3
vmacro22134 Vaccinium macrocarpon HOM05D003097 ORTHO05D003437 3.4e-21 105.9 185 44.3
Potri.005G113400 Populus trichocarpa HOM05D003097 ORTHO05D003437 7.5e-21 104.8 170 47.1
Gorai.003G009400 Gossypium raimondii HOM05D003097 ORTHO05D003437 9.8e-21 104.4 182 47.3
AT3G19860 Arabidopsis thaliana HOM05D003097 ORTHO05D003437 1.3e-20 104.0 153 43.1
Carub.0003s1974 Capsella rubella HOM05D003097 ORTHO05D003437 1.3e-20 104.0 153 43.1
Eucgr.G01757 Eucalyptus grandis HOM05D003097 ORTHO05D003437 1.3e-20 104.0 140 47.1
Sp3g17880 Schrenkiella parvula HOM05D003097 ORTHO05D003437 1.7e-20 103.6 153 43.8
Hund06404 Selenicereus undatus HOM05D003097 ORTHO05D003437 1.7e-20 103.6 140 43.6
Gohir.A02G170900 Gossypium hirsutum HOM05D003097 ORTHO05D003437 4.9e-20 102.1 161 47.2
AL3G33380 Arabidopsis lyrata HOM05D003097 ORTHO05D003437 1.8e-19 100.1 153 41.8
VMungo1127G0884 Vigna mungo HOM05D003097 ORTHO05D003437 1.8e-19 100.1 179 45.3
Rhsim10G0211800 Rhododendron simsii HOM05D003097 ORTHO05D003437 2.4e-19 99.8 178 42.7
Gohir.D03G009200 Gossypium hirsutum HOM05D003097 ORTHO05D003437 4.1e-19 99.0 182 45.6
CiPaw.07G058800 Carya illinoinensis HOM05D003097 ORTHO05D003437 7.0e-19 98.2 184 45.1
Hund14046 Selenicereus undatus HOM05D003097 ORTHO05D003437 9.2e-19 97.8 187 40.1
Actinidia17442 Actinidia chinensis HOM05D003097 ORTHO05D003437 1.2e-18 97.4 182 41.2
Actinidia22974 Actinidia chinensis HOM05D003097 ORTHO05D003437 1.2e-18 97.4 183 42.6
Phvul.011G026500 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 1.6e-18 97.1 179 43.0
TWI75G0491 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 1.6e-18 97.1 184 47.8
Duzib187G0417 Durio zibethinus HOM05D003097 ORTHO05D003437 2.0e-18 96.7 184 44.0
Eucgr.E03686 Eucalyptus grandis HOM05D003097 ORTHO05D003437 2.0e-18 96.7 151 47.0
Lsat_1_v5_gn_8_125901 Lactuca sativa HOM05D003097 ORTHO05D003437 2.7e-18 96.3 186 47.3
Eucgr.F04044 Eucalyptus grandis HOM05D003097 ORTHO05D003437 5.9e-18 95.1 155 46.5
Lalb_Chr03g0024691 Lupinus albus HOM05D003097 ORTHO05D003437 7.8e-18 94.7 189 40.7
Eucgr.I02346 Eucalyptus grandis HOM05D003097 ORTHO05D003437 1.0e-17 94.4 181 44.2
Eucgr.A02944 Eucalyptus grandis HOM05D003097 ORTHO05D003437 1.7e-17 93.6 151 47.0
AUR62029468 Chenopodium quinoa HOM05D003097 ORTHO05D003437 2.9e-17 92.8 178 41.0
Thhalv10023630m.g Eutrema salsugineum HOM05D003097 ORTHO05D003437 3.9e-17 92.4 154 39.6
CARHR095380 Cardamine hirsuta HOM05D003097 ORTHO05D003437 1.1e-16 90.9 189 42.3
Manes.01G145900 Manihot esculenta HOM05D003097 ORTHO05D003437 1.1e-16 90.9 183 42.1
Sed0000450 Sechium edule HOM05D003097 ORTHO05D003437 2.5e-16 89.7 158 46.2
THA.LOC104819748 Tarenaya hassleriana HOM05D003097 ORTHO05D003437 3.3e-16 89.4 150 40.0
Eucgr.L03636 Eucalyptus grandis HOM05D003097 ORTHO05D003437 5.6e-16 88.6 151 46.4
Gohir.D11G182600 Gossypium hirsutum HOM05D003097 ORTHO05D003437 7.3e-16 88.2 164 40.2
Os02g0433600 Oryza sativa ssp. japonica HOM05D003097 ORTHO05D003437 1.2e-15 87.4 203 45.3
BraA01t03571Z Brassica rapa HOM05D003882 ORTHO05D004598 1.6e-15 87.0 154 41.6
ATR0810G161 Amborella trichopoda HOM05D003097 ORTHO05D003437 2.1e-15 86.7 188 39.9
Eucgr.C02076 Eucalyptus grandis HOM05D003097 ORTHO05D003437 2.1e-15 86.7 151 45.7
Eucgr.L03550 Eucalyptus grandis HOM05D003097 ORTHO05D003437 2.1e-15 86.7 151 45.7
A01p34880 Brassica napus HOM05D003097 ORTHO05D003437 3.6e-15 85.9 154 40.9
Gorai.007G194400 Gossypium raimondii HOM05D003097 ORTHO05D003437 8.0e-15 84.7 185 36.8
unitig_0.g2347 Utricularia gibba HOM05D003097 ORTHO05D003437 1.4e-14 84.0 119 51.3
C01p44290 Brassica napus HOM05D003097 ORTHO05D003437 1.8e-14 83.6 154 40.3
BolC1t04394H Brassica oleracea HOM05D003882 ORTHO05D004598 1.8e-14 83.6 154 40.3
CANSAT01G2970 Cannabis sativa HOM05D003097 ORTHO05D003437 2.3e-14 83.2 145 45.5
Glyma.07G171600 Glycine max HOM05D003097 ORTHO05D003437 2.3e-14 83.2 190 37.9
Eucgr.E02120 Eucalyptus grandis HOM05D003097 ORTHO05D003437 3.1e-14 82.8 151 45.0
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 5.2e-14 82.0 180 38.3
arahy.Tifrunner.gnm1.ann1.4V5YZV Arachis hypogaea HOM05D003097 ORTHO05D003437 1.2e-13 80.9 194 39.7
arahy.Tifrunner.gnm1.ann1.SH99DR Arachis hypogaea HOM05D003097 ORTHO05D003437 1.2e-13 80.9 194 39.7
Phvul.003G016700 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 1.2e-13 80.9 196 40.8
HPP92_027730 Vanilla planifolia HOM05D003097 ORTHO05D003437 1.5e-13 80.5 203 33.0
Lj2A468T74 Lonicera japonica HOM05D003097 ORTHO05D003437 2.0e-13 80.1 184 39.7
VMungo1215G2525 Vigna mungo HOM05D003097 ORTHO05D003437 4.4e-13 79.0 192 39.1
HPP92_026029 Vanilla planifolia HOM05D003097 ORTHO05D003437 5.8e-13 78.6 197 33.0
Ca_12533_v3 Cicer arietinum L. HOM05D000822 ORTHO05D002021 2.2e-12 76.6 181 40.9
CDE05G0451 Ceratophyllum demersum HOM05D003097 ORTHO05D003437 2.9e-12 76.3 139 45.3
Zm00001eb159750 Zea mays HOM05D003097 ORTHO05D003437 8.3e-12 74.7 183 39.9
Ah.03g148800 Amaranthus hybridus HOM05D003097 ORTHO05D003437 1.1e-11 74.3 190 35.8
AUR62003365 Chenopodium quinoa HOM05D003097 ORTHO05D003437 1.9e-11 73.6 134 35.8
Lsat_1_v5_gn_4_144860 Lactuca sativa HOM05D003097 ORTHO05D003437 1.2e-10 70.9 176 35.2
Medtr1g032600 Medicago truncatula HOM05D003097 ORTHO05D003437 1.3e-09 67.4 184 37.5
BcaC09g48940 Brassica carinata HOM05D003097 ORTHO05D003437 3.9e-09 65.9 154 37.7
ECA232G2587 Erigeron canadensis HOM05D003097 ORTHO05D003437 5.0e-09 65.5 183 35.5
MD15G1245200 Malus domestica HOM05D003097 ORTHO05D003437 1.9e-08 63.5 70 50.0
TPR.G35316 Trifolium pratense HOM05D003097 ORTHO05D003437 5.6e-08 62.0 180 36.1
Psat6g051600 Pisum sativum HOM05D003097 ORTHO05D003437 3.1e-06 56.2 176 35.8
CDE05G2414 Ceratophyllum demersum HOM05D003097 ORTHO05D003437 5.2e-06 55.5 187 36.9


User provided reference genes

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