Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 3.2e-185 651.7 366 100.0
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 4.3e-145 518.5 309 96.1
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.1e-111 406.0 414 66.7
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 6.9e-111 404.8 412 65.0
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 4.5e-110 402.1 421 64.1
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.3e-109 400.6 411 65.2
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 1.4e-108 397.1 411 63.7
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 1.9e-108 396.7 421 62.7
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 9.3e-108 394.4 410 63.9
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.2e-107 394.0 410 64.1
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 3.5e-107 392.5 421 62.2
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 4.6e-107 392.1 420 63.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.6e-107 392.1 410 63.7
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 4.6e-107 392.1 409 63.1
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.9e-105 386.7 410 63.2
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 2.8e-104 382.9 417 60.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.4e-103 379.8 417 60.0
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.2e-102 377.5 414 59.9
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.2e-102 377.5 421 60.3
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.2e-102 377.5 409 61.6
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.4e-102 375.9 415 61.2
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.5e-102 375.6 415 61.0
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.7e-101 373.6 419 60.4
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 8.5e-101 371.3 421 59.9
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 4.2e-100 369.0 413 61.3
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 4.2e-100 369.0 430 59.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.7e-99 366.3 413 60.5
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 4.6e-99 365.5 428 59.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 3.0e-98 362.8 420 58.6
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 5.1e-98 362.1 428 56.5
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 5.1e-98 362.1 408 60.3
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 1.9e-97 360.1 422 57.3
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 1.3e-96 357.5 420 59.5
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 4.8e-96 355.5 415 57.3
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.1e-95 354.4 418 57.4
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.1e-95 354.4 417 59.0
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 1.2e-94 350.9 411 58.2
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 2.6e-94 349.7 422 56.4
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.4e-94 349.4 417 59.0
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 3.4e-94 349.4 436 56.7
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 7.7e-94 348.2 414 56.8
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 1.0e-93 347.8 434 56.2
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.7e-93 347.1 414 58.9
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.9e-93 346.3 418 57.7
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 2.9e-93 346.3 401 58.9
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 8.5e-93 344.7 428 55.8
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 8.5e-93 344.7 413 57.4
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.9e-92 343.6 413 56.4
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.9e-92 343.6 419 57.0
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.9e-92 343.6 430 56.5
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 1.9e-92 343.6 398 58.3
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 3.2e-92 342.8 415 56.1
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 4.2e-92 342.4 415 57.6
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 4.2e-92 342.4 398 59.0
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 7.2e-92 341.7 413 56.2
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 9.4e-92 341.3 413 56.2
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 9.4e-92 341.3 415 57.3
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.6e-91 340.5 417 56.4
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 1.6e-91 340.5 416 56.2
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.1e-91 340.1 420 55.7
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 2.1e-91 340.1 423 57.9
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 3.6e-91 339.3 413 55.7
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 3.6e-91 339.3 411 57.4
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 4.6e-91 339.0 413 55.9
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.6e-91 339.0 413 55.4
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 6.1e-91 338.6 420 57.6
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 3.0e-90 336.3 401 58.9
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 3.9e-90 335.9 420 56.2
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 8.8e-90 334.7 432 55.8
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 1.1e-89 334.3 437 55.8
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 1.1e-89 334.3 437 55.8
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.1e-89 334.3 419 54.2
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 1.5e-89 334.0 438 56.4
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 1.5e-89 334.0 446 54.3
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.5e-89 334.0 414 55.3
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 2.0e-89 333.6 414 55.3
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 2.6e-89 333.2 419 55.6
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 3.3e-89 332.8 420 55.7
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.3e-89 332.8 414 55.3
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.3e-89 332.8 336 64.9
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 4.4e-89 332.4 400 57.2
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 5.7e-89 332.0 410 56.8
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.4e-89 331.6 421 55.6
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 9.7e-89 331.3 439 54.7
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.7e-88 330.5 419 55.4
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 2.2e-88 330.1 403 57.1
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 2.8e-88 329.7 432 54.4
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 3.7e-88 329.3 403 55.6
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 4.8e-88 328.9 414 55.1
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.2e-88 328.2 420 55.5
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 2.4e-87 326.6 408 56.4
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 3.1e-87 326.2 414 53.4
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 5.3e-87 325.5 414 53.1
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 6.9e-87 325.1 431 53.6
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 1.0e-85 321.2 439 53.8
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 6.5e-85 318.5 412 51.2
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.9e-84 317.0 440 53.2
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.9e-84 317.0 414 53.1
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.2e-84 316.2 406 54.7
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 5.5e-84 315.5 438 53.9
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-83 314.3 412 54.1
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 1.6e-83 313.9 441 54.0
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 3.6e-83 312.8 425 53.4
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 6.1e-83 312.0 364 58.2
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 1.8e-82 310.5 443 52.6
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.0e-82 309.7 411 53.0
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.9e-82 309.3 327 56.3
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 8.8e-82 308.1 364 58.2
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 1.1e-81 307.8 436 53.0
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.5e-81 307.4 364 58.2
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.0e-81 307.0 348 59.8
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 1.8e-79 300.4 443 49.7
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 1.2e-78 297.7 404 51.0
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 3.8e-77 292.7 336 57.7
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.1e-76 291.2 350 54.9
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 1.9e-76 290.4 400 54.0
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 3.2e-76 289.7 333 60.1
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.8e-74 283.9 351 52.7
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 4.4e-73 279.3 325 56.3
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 9.7e-73 278.1 329 51.1
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.7e-72 277.3 352 53.7
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.6e-70 270.8 368 50.3
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.2e-64 250.4 410 46.8
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 1.2e-62 244.6 421 44.4
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 2.7e-62 243.4 331 48.6
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.0e-61 241.5 369 50.4
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 3.8e-61 239.6 368 50.0
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.0e-59 231.9 394 47.7
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 8.6e-53 211.8 425 41.9
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 5.6e-52 209.1 397 42.3
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.6e-51 206.5 245 58.4
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 1.2e-49 201.4 196 62.8
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.0e-46 190.7 308 44.5
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.1e-39 168.3 273 46.9
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 2.0e-38 164.1 268 47.4
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 2.0e-38 164.1 268 47.4
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 5.0e-37 159.5 211 52.6
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.2e-35 154.8 320 46.6
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.3e-34 150.6 183 56.3
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 4.0e-34 149.8 350 36.6
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.5e-33 147.9 243 42.8
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.4e-33 146.7 344 39.0
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 4.1e-31 139.8 156 51.3
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 3.0e-29 133.7 368 36.7
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 6.6e-29 132.5 252 36.5
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 4.9e-24 116.3 200 45.5
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 5.4e-23 112.8 219 41.1
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.2e-22 111.7 103 63.1
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 7.3e-20 102.4 103 56.3
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.2e-19 101.7 249 31.3
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 2.1e-19 100.9 155 55.5
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.0e-13 82.0 105 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.9e-08 63.9 216 27.8
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 9.3e-07 58.9 69 52.2


User provided reference genes

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