Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.6e-71 272.7 140 100.0
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.4e-66 254.6 140 92.1
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 5.8e-66 254.2 139 92.8
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 3.7e-65 251.5 140 90.7
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 5.4e-64 247.7 140 90.0
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 3.0e-62 241.9 140 89.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 8.3e-57 223.8 140 82.1
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.4e-56 222.2 145 83.4
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 4.6e-55 218.0 145 84.1
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.3e-54 215.7 145 80.0
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 5.6e-53 211.1 153 73.9
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 4.7e-52 208.0 155 74.8
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.7e-52 208.0 145 78.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 6.2e-52 207.6 155 74.8
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 6.2e-52 207.6 145 78.6
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 8.1e-52 207.2 155 74.2
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 8.1e-52 207.2 155 74.2
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.1e-51 206.8 143 79.7
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.8e-51 206.1 155 73.5
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 8.9e-51 203.8 145 77.9
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 8.9e-51 203.8 155 71.6
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.5e-50 203.0 157 73.9
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 2.0e-50 202.6 155 72.3
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 2.0e-50 202.6 155 72.9
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 2.0e-50 202.6 155 72.9
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.0e-50 202.6 157 70.7
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.6e-50 202.2 155 70.3
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.6e-50 202.2 145 77.2
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 2.6e-50 202.2 145 77.2
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 7.6e-50 200.7 155 72.3
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 9.9e-50 200.3 153 70.6
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.3e-49 199.9 155 72.3
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.7e-49 199.5 155 71.0
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 1.7e-49 199.5 154 69.5
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.7e-49 199.5 155 70.3
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 2.2e-49 199.1 155 69.7
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 3.8e-49 198.4 153 69.3
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.8e-49 198.4 155 72.3
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.8e-49 198.4 155 72.3
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 4.9e-49 198.0 155 71.6
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 6.4e-49 197.6 154 72.1
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 8.4e-49 197.2 155 69.7
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.1e-48 196.8 155 71.6
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.9e-48 196.1 142 72.5
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.9e-48 196.1 155 70.3
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 3.2e-48 195.3 154 68.2
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 4.1e-48 194.9 155 70.3
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 4.1e-48 194.9 154 70.1
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 5.4e-48 194.5 155 69.0
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 9.2e-48 193.7 154 68.8
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 9.2e-48 193.7 155 69.0
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.7e-47 192.2 154 68.2
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 3.5e-47 191.8 153 66.0
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.5e-47 191.8 154 68.2
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 4.6e-47 191.4 154 68.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 7.8e-47 190.7 154 69.5
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.3e-46 189.9 155 69.0
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 2.3e-46 189.1 143 73.4
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.9e-46 188.3 153 65.4
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 1.1e-45 186.8 141 73.8
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 3.3e-45 185.3 156 68.6
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 5.6e-45 184.5 147 68.0
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.8e-44 182.2 156 66.7
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.6e-44 181.8 158 63.3
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.1e-43 180.3 155 68.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.1e-43 180.3 169 62.1
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 2.4e-43 179.1 161 66.5
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.1e-43 178.7 151 69.5
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.9e-43 177.2 141 71.6
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.4e-42 175.3 128 75.0
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 4.4e-42 174.9 155 64.5
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 7.6e-42 174.1 155 63.9
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.3e-41 173.3 157 65.0
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 2.9e-41 172.2 155 63.9
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.9e-41 171.4 149 67.1
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 4.9e-41 171.4 155 63.2
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 6.4e-41 171.0 198 53.0
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 6.4e-41 171.0 146 66.4
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.1e-40 170.2 146 66.4
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 3.2e-40 168.7 155 62.6
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.2e-40 168.7 93 90.3
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 4.2e-40 168.3 151 66.2
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.2e-40 168.3 153 66.0
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 7.1e-40 167.5 155 63.2
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 7.1e-40 167.5 151 65.6
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 1.2e-39 166.8 153 62.1
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-39 166.8 155 60.6
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-39 166.8 155 60.6
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 2.1e-39 166.0 154 61.0
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 2.7e-39 165.6 155 62.6
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 2.7e-39 165.6 155 62.6
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 3.5e-39 165.2 166 58.4
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 6.0e-39 164.5 139 68.3
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-38 163.7 155 60.0
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.3e-38 162.5 155 59.4
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 6.6e-38 161.0 220 47.7
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 8.7e-38 160.6 155 58.1
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.5e-37 159.8 153 61.4
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 1.5e-37 159.8 155 58.1
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 5.6e-37 157.9 152 61.2
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 5.6e-37 157.9 161 58.4
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 7.3e-37 157.5 155 57.4
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 9.6e-37 157.1 93 82.8
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.3e-36 156.8 150 62.7
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 2.1e-36 156.0 93 82.8
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 3.6e-36 155.2 155 60.0
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 1.1e-35 153.7 116 71.6
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.1e-35 152.1 153 55.6
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 3.1e-35 152.1 155 56.8
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 6.9e-35 151.0 155 58.1
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 6.9e-35 151.0 154 59.1
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.5e-34 149.8 144 61.8
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.5e-34 149.8 154 58.4
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.4e-34 148.7 154 55.8
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 4.5e-34 148.3 181 51.4
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.5e-34 148.3 95 83.2
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.8e-34 147.9 154 56.5
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 7.6e-34 147.5 154 56.5
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 9.9e-34 147.1 113 71.7
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.7e-33 146.4 155 54.2
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.9e-33 145.6 128 62.5
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.9e-33 144.8 153 58.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 4.9e-33 144.8 154 56.5
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 6.4e-33 144.4 157 57.3
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.4e-32 143.3 119 66.4
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.4e-32 142.5 154 55.8
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 3.2e-32 142.1 153 55.6
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 5.4e-32 141.4 151 55.6
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 5.4e-32 141.4 151 55.6
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 5.4e-32 141.4 151 55.6
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 7.1e-32 141.0 153 56.2
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 7.1e-32 141.0 139 64.7
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.1e-31 139.4 144 57.6
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.1e-31 139.4 144 57.6
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 2.7e-31 139.0 96 71.9
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 3.5e-31 138.7 267 39.0
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 6.0e-31 137.9 182 50.5
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 7.9e-31 137.5 153 52.9
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.3e-30 136.7 149 52.3
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.3e-30 136.7 150 55.3
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.8e-30 136.3 114 63.2
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.8e-30 136.3 114 64.9
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.8e-30 136.3 153 52.9
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 5.1e-30 134.8 146 56.2
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.5e-29 133.3 152 53.9
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.9e-29 132.9 153 51.0
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 4.3e-29 131.7 141 58.2
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 5.6e-29 131.3 103 66.0
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.6e-28 128.6 111 62.2
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 2.0e-26 122.9 93 67.7
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.0e-26 122.9 97 64.9
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.0e-26 122.9 94 66.0
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.4e-26 122.1 122 62.3
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 4.5e-26 121.7 120 60.0
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.2e-25 119.4 156 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.9e-25 119.0 148 50.7
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 4.9e-25 118.2 144 50.7
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.4e-25 117.9 92 64.1
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 7.9e-23 110.9 123 55.3
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 5.3e-19 98.2 77 61.0
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 6.9e-19 97.8 155 43.2
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 2.0e-18 96.3 75 77.3
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 1.3e-17 93.6 85 52.9
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 8.4e-17 90.9 91 60.4
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.1e-16 90.5 145 45.5
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.2e-15 87.0 61 70.5
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.7e-15 85.9 91 56.0
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.5e-13 80.1 167 38.9
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 1.6e-12 76.6 41 85.4
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.1e-11 73.9 46 73.9
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.1e-11 73.9 59 61.0
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.1e-11 72.0 59 61.0
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 2.0e-10 69.7 85 55.3
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.9e-09 65.9 66 48.5
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.8e-09 65.5 86 43.0
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 1.1e-08 63.9 41 75.6
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 1.2e-07 60.5 127 35.4
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.7e-06 54.7 70 41.4


User provided reference genes

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