Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.5e-189 666.0 330 100.0
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 5.3e-70 268.9 224 65.6
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.0e-57 226.5 213 54.9
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 2.8e-55 219.9 209 55.0
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 2.4e-54 216.9 195 57.9
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 5.9e-53 212.2 232 50.0
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 6.8e-49 198.7 219 49.8
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 2.0e-48 197.2 207 49.3
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 7.0e-46 188.7 219 47.5
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 2.0e-45 187.2 243 44.0
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 4.5e-45 186.0 210 46.2
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 1.7e-44 184.1 218 44.0
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 1.9e-43 180.6 202 48.5
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.1e-42 175.6 221 42.1
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.8e-41 174.1 221 42.1
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.8e-41 174.1 221 42.5
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.0e-41 172.9 221 43.0
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 1.5e-40 171.0 223 44.8
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 1.5e-40 171.0 221 43.0
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 1.5e-40 171.0 218 44.5
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 5.7e-40 169.1 211 43.6
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.7e-40 169.1 221 41.6
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.7e-40 169.1 221 41.2
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.9e-39 166.8 221 41.6
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 3.7e-39 166.4 221 41.6
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 4.9e-39 166.0 221 40.7
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 4.9e-39 166.0 222 42.3
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.1e-38 162.9 223 43.5
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 4.1e-38 162.9 223 43.5
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 5.4e-38 162.5 211 42.2
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 7.0e-38 162.2 202 43.6
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 1.2e-37 161.4 179 46.4
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 1.6e-37 161.0 205 42.9
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 2.7e-37 160.2 220 42.3
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 2.7e-37 160.2 222 41.4
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 4.6e-37 159.5 221 39.8
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 5.9e-37 159.1 207 44.0
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 1.0e-36 158.3 205 41.0
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.7e-36 157.5 220 40.9
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 2.3e-36 157.1 209 44.0
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 2.9e-36 156.8 223 40.4
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 6.6e-36 155.6 205 42.0
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 6.6e-36 155.6 211 40.8
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.1e-35 154.8 213 41.3
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 1.1e-35 154.8 211 40.8
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 1.5e-35 154.5 212 40.6
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 2.5e-35 153.7 207 41.5
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 2.5e-35 153.7 211 42.7
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 3.3e-35 153.3 218 40.8
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 3.3e-35 153.3 205 41.5
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 4.3e-35 152.9 199 41.2
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 5.6e-35 152.5 216 39.4
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 7.3e-35 152.1 219 40.6
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 7.3e-35 152.1 199 40.2
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 9.5e-35 151.8 218 40.8
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 1.6e-34 151.0 219 40.6
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 2.1e-34 150.6 191 40.8
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 2.8e-34 150.2 212 43.4
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 4.7e-34 149.4 208 38.9
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.4e-33 147.9 202 41.6
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 1.4e-33 147.9 204 40.2
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 2.3e-33 147.1 216 41.2
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 2.3e-33 147.1 203 41.4
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 2.3e-33 147.1 223 38.1
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.3e-33 147.1 212 40.6
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 3.1e-33 146.7 160 45.0
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 5.2e-33 146.0 221 38.5
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 5.2e-33 146.0 202 40.6
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 6.8e-33 145.6 203 40.9
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 8.9e-33 145.2 221 39.4
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.2e-32 144.8 217 38.7
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.5e-32 144.4 205 40.0
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 1.5e-32 144.4 208 41.8
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.5e-32 144.4 208 41.8
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.5e-32 144.4 208 41.8
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 1.5e-32 144.4 210 40.0
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.5e-32 144.4 163 46.0
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 1.5e-32 144.4 219 38.8
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 2.0e-32 144.1 192 40.6
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 2.6e-32 143.7 206 40.8
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 4.4e-32 142.9 205 42.9
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 5.8e-32 142.5 221 38.5
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 5.8e-32 142.5 208 41.8
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 9.8e-32 141.7 221 38.5
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 9.8e-32 141.7 198 39.9
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 9.8e-32 141.7 198 39.9
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 9.8e-32 141.7 223 36.3
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.2e-31 140.6 193 43.5
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 3.7e-31 139.8 205 40.5
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.7e-31 139.8 202 39.6
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 6.4e-31 139.0 227 38.3
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 1.4e-30 137.9 208 38.5
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 1.9e-30 137.5 203 38.4
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 1.9e-30 137.5 203 38.4
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 1.9e-30 137.5 169 43.2
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 3.2e-30 136.7 223 36.3
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 3.2e-30 136.7 220 38.2
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 4.1e-30 136.3 199 38.2
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 4.1e-30 136.3 197 38.1
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 4.1e-30 136.3 223 36.3
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 5.4e-30 136.0 199 38.2
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 7.0e-30 135.6 215 37.2
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.6e-29 134.4 214 37.9
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.7e-29 133.7 196 40.3
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 4.6e-29 132.9 199 37.7
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.0e-29 132.5 222 36.5
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.3e-28 131.3 232 37.1
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 1.3e-28 131.3 183 39.9
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.7e-28 131.0 272 31.2
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 1.7e-28 131.0 198 39.9
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.7e-28 131.0 187 41.7
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 2.3e-28 130.6 210 39.5
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 3.0e-28 130.2 199 37.2
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 3.9e-28 129.8 187 38.5
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 3.9e-28 129.8 227 37.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.0e-28 129.4 213 36.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 8.6e-28 128.6 213 36.6
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 4.3e-27 126.3 222 35.6
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 9.5e-27 125.2 188 39.4
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 9.5e-27 125.2 196 38.8
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 1.6e-26 124.4 157 42.0
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 1.6e-26 124.4 160 42.5
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.1e-26 124.0 158 41.1
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 2.1e-26 124.0 186 37.6
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 3.6e-26 123.2 256 32.4
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.4e-25 121.3 186 38.7
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.4e-25 121.3 175 37.7
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 3.1e-25 120.2 161 40.4
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 3.1e-25 120.2 183 38.8
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 1.5e-24 117.9 154 45.5
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.0e-24 117.5 159 38.4
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.4e-24 116.7 152 38.2
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 3.4e-24 116.7 158 39.2
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 4.4e-24 116.3 160 38.8
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.3e-23 114.8 161 39.8
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.6e-21 107.8 244 31.6
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 1.6e-21 107.8 244 31.1
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 2.7e-21 107.1 167 40.7
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 7.8e-21 105.5 248 29.4
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 2.3e-20 104.0 226 30.1
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 2.3e-20 104.0 98 55.1
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.1e-19 101.7 229 30.6
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 1.1e-19 101.7 221 33.5
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 7.3e-19 99.0 248 30.2
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 7.3e-19 99.0 90 53.3
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 9.5e-19 98.6 164 38.4
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 1.2e-18 98.2 164 37.2
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 2.8e-18 97.1 167 32.9
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 2.8e-18 97.1 92 53.3
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 4.7e-18 96.3 145 37.9
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.1e-17 93.6 197 32.5
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.5e-16 91.3 157 35.0
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.7e-15 87.8 99 43.4
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 2.2e-15 87.4 221 29.0
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 6.4e-15 85.9 142 38.0
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 8.4e-15 85.5 185 33.5
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 3.2e-14 83.6 116 36.2
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 7.1e-14 82.4 84 51.2
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 9.2e-14 82.0 221 29.0
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 9.2e-14 82.0 79 50.6
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 1.6e-13 81.3 199 31.7
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 1.0e-12 78.6 73 54.8
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 3.0e-12 77.0 107 40.2
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 8.6e-12 75.5 62 53.2
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 1.1e-11 75.1 154 32.5
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.1e-11 75.1 107 42.1
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 1.9e-11 74.3 103 37.9
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.8e-09 67.8 81 40.7
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 1.8e-09 67.8 117 33.3
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 5.2e-09 66.2 77 39.0
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 1.2e-08 65.1 43 65.1
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-07 60.1 135 29.6
CAN.G125.23 Capsicum annuum HOM05D000107 ORTHO05D000062 9.3e-06 55.5 64 45.3


User provided reference genes

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