Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 3.8e-85 318.2 165 100.0
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 1.4e-34 150.2 132 61.4
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 4.0e-34 148.7 131 61.1
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 1.4e-31 140.2 132 59.1
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 9.3e-31 137.5 137 59.9
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.6e-27 126.7 132 56.1
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.6e-27 126.7 132 56.1
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 2.1e-27 126.3 131 52.7
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 8.1e-27 124.4 120 55.0
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 1.4e-26 123.6 133 50.4
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 2.4e-26 122.9 133 52.6
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 3.1e-26 122.5 132 52.3
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 6.9e-26 121.3 129 52.7
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 1.2e-25 120.6 131 51.1
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 1.5e-25 120.2 129 51.9
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.5e-25 120.2 129 51.9
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.6e-25 119.4 129 51.9
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 2.6e-25 119.4 130 50.0
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 2.6e-25 119.4 130 50.0
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 4.5e-25 118.6 130 51.5
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 4.5e-25 118.6 130 49.2
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 5.8e-25 118.2 129 51.2
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 5.8e-25 118.2 128 51.6
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 5.8e-25 118.2 123 54.5
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 7.6e-25 117.9 128 50.8
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 7.6e-25 117.9 125 52.0
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 2.2e-24 116.3 132 48.5
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 2.2e-24 116.3 126 49.2
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 2.2e-24 116.3 130 49.2
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 6.4e-24 114.8 130 49.2
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 8.4e-24 114.4 130 49.2
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 1.4e-23 113.6 130 49.2
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 1.9e-23 113.2 129 48.8
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 3.2e-23 112.5 129 48.8
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 3.2e-23 112.5 130 48.5
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 4.2e-23 112.1 131 48.9
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 4.2e-23 112.1 128 50.8
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 4.2e-23 112.1 129 48.1
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 5.4e-23 111.7 125 48.8
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 5.4e-23 111.7 132 47.7
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 7.1e-23 111.3 127 48.0
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 7.1e-23 111.3 125 48.8
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 7.1e-23 111.3 130 47.7
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 7.1e-23 111.3 131 49.6
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 1.6e-22 110.2 129 47.3
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 1.6e-22 110.2 128 51.6
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 2.1e-22 109.8 125 49.6
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 2.7e-22 109.4 125 50.4
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 2.7e-22 109.4 125 50.4
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 2.7e-22 109.4 123 48.0
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 3.5e-22 109.0 133 48.9
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 4.6e-22 108.6 125 47.2
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 6.0e-22 108.2 122 50.0
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 7.9e-22 107.8 125 49.6
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 7.9e-22 107.8 130 46.2
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 7.9e-22 107.8 130 46.2
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 7.9e-22 107.8 130 46.2
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 7.9e-22 107.8 130 45.4
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 1.3e-21 107.1 125 47.2
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.3e-21 107.1 122 51.6
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.8e-21 106.7 125 48.0
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 2.3e-21 106.3 135 49.6
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 3.0e-21 105.9 123 52.8
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 3.0e-21 105.9 122 50.0
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 3.9e-21 105.5 128 48.4
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 6.7e-21 104.8 125 46.4
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 1.1e-20 104.0 125 45.6
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 1.1e-20 104.0 130 48.5
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 1.1e-20 104.0 124 50.0
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 1.5e-20 103.6 124 47.6
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 1.5e-20 103.6 125 47.2
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 1.9e-20 103.2 123 52.0
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 1.9e-20 103.2 130 44.6
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 2.5e-20 102.8 125 46.4
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 2.5e-20 102.8 135 46.7
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 3.3e-20 102.4 125 46.4
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 3.3e-20 102.4 128 47.7
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 7.4e-20 101.3 126 50.0
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 7.4e-20 101.3 126 50.0
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 9.6e-20 100.9 126 45.2
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 9.6e-20 100.9 125 43.2
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 1.3e-19 100.5 125 45.6
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 1.3e-19 100.5 125 45.6
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.3e-19 100.5 125 44.0
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 1.6e-19 100.1 132 42.4
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.6e-19 100.1 126 45.2
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.6e-19 100.1 125 45.6
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 2.1e-19 99.8 125 45.6
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 2.1e-19 99.8 125 45.6
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 2.8e-19 99.4 125 46.4
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 2.8e-19 99.4 106 56.6
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 3.6e-19 99.0 132 45.5
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 4.8e-19 98.6 125 45.6
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 4.8e-19 98.6 125 46.4
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 2.4e-18 96.3 128 43.8
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 4.0e-18 95.5 127 42.5
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 1.5e-17 93.6 121 45.5
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 1.3e-16 90.5 104 50.0
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 2.2e-16 89.7 118 50.0
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 4.9e-16 88.6 120 49.2
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 3.5e-14 82.4 81 54.3
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 6.7e-13 78.2 125 39.2
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 8.7e-13 77.8 126 39.7
Oeu040654.1 Olea europaea HOM05D004826 ORTHO05D006367 1.5e-12 77.0 96 50.0
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.9e-12 76.6 96 52.1
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.1e-10 70.9 93 46.2
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 1.2e-09 67.4 133 39.1
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 1.3e-08 63.9 100 43.0
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 1.3e-08 63.9 60 56.7
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 6.0e-06 55.1 73 42.5
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 6.0e-06 55.1 116 32.8
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 7.9e-06 54.7 96 37.5


User provided reference genes

Program Settings