Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 9.1e-201 703.4 354 100.0
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 8.9e-164 580.5 338 87.6
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 2.0e-155 552.7 343 80.8
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 2.3e-148 529.3 343 78.4
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 4.0e-148 528.5 343 78.1
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 2.6e-147 525.8 335 80.6
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 7.5e-147 524.2 348 76.7
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 4.9e-146 521.5 341 77.4
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.2e-144 516.9 344 77.3
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.2e-144 516.9 337 77.4
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 2.7e-144 515.8 328 79.9
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 4.6e-144 515.0 329 79.3
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.0e-143 513.8 343 77.0
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 1.0e-143 513.8 330 79.1
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 1.7e-143 513.1 328 79.3
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 2.3e-143 512.7 354 74.9
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 2.5e-142 509.2 353 76.2
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 3.3e-142 508.8 352 72.7
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 4.3e-142 508.4 351 75.5
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 5.6e-142 508.1 330 79.1
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 5.6e-142 508.1 348 73.3
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 7.3e-142 507.7 327 78.9
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 9.5e-142 507.3 357 73.9
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 9.5e-142 507.3 344 75.3
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 9.5e-142 507.3 325 78.8
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 1.2e-141 506.9 353 75.1
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 1.6e-141 506.5 334 76.9
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.6e-141 506.5 354 75.4
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 4.7e-141 505.0 345 75.9
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 4.7e-141 505.0 396 68.7
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 1.1e-140 503.8 352 74.4
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.1e-140 503.8 328 79.3
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 1.4e-140 503.4 330 77.9
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.4e-140 503.4 359 73.8
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 4.0e-140 501.9 328 78.4
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 5.2e-140 501.5 336 76.2
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 6.8e-140 501.1 352 75.0
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 8.9e-140 500.7 328 79.0
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 1.2e-139 500.4 342 74.6
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 2.0e-139 499.6 353 73.7
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 3.4e-139 498.8 355 73.5
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 2.2e-138 496.1 327 78.6
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.9e-138 495.7 321 78.5
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.9e-138 495.0 331 76.4
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 6.4e-138 494.6 353 73.1
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 6.4e-138 494.6 345 74.2
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.9e-137 493.0 354 72.9
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.1e-137 491.9 331 76.4
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.1e-137 491.1 335 75.2
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 1.3e-135 486.9 329 77.5
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 3.0e-135 485.7 351 71.5
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 8.7e-135 484.2 346 72.8
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.5e-134 483.4 350 71.4
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 7.3e-134 481.1 327 75.2
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 6.2e-133 478.0 324 76.2
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 8.1e-133 477.6 356 69.9
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 1.8e-132 476.5 352 72.2
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 2.4e-132 476.1 354 71.5
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 2.4e-132 476.1 351 70.1
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 3.1e-132 475.7 353 72.0
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 4.0e-132 475.3 351 70.1
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 5.2e-132 474.9 327 74.9
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 1.5e-131 473.4 344 71.5
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.3e-130 470.3 328 73.5
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.7e-130 469.9 349 70.8
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 4.9e-130 468.4 327 74.0
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 6.4e-130 468.0 322 73.6
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 6.4e-130 468.0 327 73.4
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-128 463.8 336 72.3
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.2e-128 463.8 354 68.9
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.2e-128 463.8 354 68.9
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.2e-128 463.8 354 68.9
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.6e-128 463.4 326 71.8
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 4.6e-128 461.8 355 67.9
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 6.0e-128 461.5 356 68.3
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 7.8e-128 461.1 341 70.1
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.0e-127 460.7 333 71.2
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 1.3e-127 460.3 343 69.7
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 1.3e-127 460.3 343 69.7
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 1.3e-127 460.3 343 69.7
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 8.7e-127 457.6 353 68.0
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 8.7e-127 457.6 353 68.0
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 1.1e-126 457.2 336 70.2
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 2.5e-126 456.1 336 69.9
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 4.3e-126 455.3 336 69.9
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 1.3e-125 453.8 326 70.6
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 1.4e-124 450.3 351 67.0
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.8e-124 449.9 325 71.1
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 4.0e-124 448.7 322 71.1
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 5.3e-124 448.4 340 70.3
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 9.0e-124 447.6 351 67.2
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 3.4e-123 445.7 362 65.7
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 5.8e-123 444.9 356 67.1
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 5.8e-123 444.9 357 66.4
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 7.6e-123 444.5 356 66.9
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 9.9e-123 444.1 326 69.9
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 9.9e-123 444.1 356 65.7
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 4.9e-122 441.8 357 65.8
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 4.9e-122 441.8 357 65.8
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.4e-121 440.3 361 64.8
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.4e-121 440.3 295 75.6
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 9.3e-121 437.6 362 64.9
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.3e-119 433.7 362 64.4
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.8e-119 433.3 339 67.3
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 2.3e-119 433.0 294 76.2
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 9.6e-118 427.6 353 65.7
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.4e-116 423.7 326 67.5
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 3.0e-111 406.0 348 64.7
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 6.2e-109 398.3 342 64.0
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 6.5e-106 388.3 255 77.3
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 4.2e-105 385.6 256 76.6
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.3e-102 375.9 327 63.3
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.7e-102 375.2 303 68.6
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 5.7e-102 375.2 286 69.9
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.3e-101 374.0 328 57.6
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 2.8e-101 372.9 303 60.7
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 9.0e-100 367.9 343 56.0
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 2.6e-99 366.3 352 58.5
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 6.1e-96 355.1 346 55.8
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 7.9e-96 354.8 325 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 8.8e-95 351.3 325 54.8
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.5e-94 350.5 241 74.3
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.3e-94 349.4 236 75.4
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 1.4e-84 317.4 235 63.8
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.9e-83 312.0 267 64.4
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 7.2e-73 278.5 149 87.9
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 4.0e-71 272.7 324 42.9
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 1.6e-67 260.8 330 42.4
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.0e-66 258.1 344 46.5
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.7e-64 250.0 159 80.5
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 1.2e-51 208.0 242 44.6
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 3.6e-48 196.4 151 65.6
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 5.8e-46 189.1 112 81.2
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 8.9e-39 165.2 313 34.2
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 8.3e-37 158.7 219 44.7
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.4e-36 156.0 94 79.8
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.6e-35 154.5 94 78.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.6e-35 154.5 94 78.7
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 2.7e-35 153.7 413 30.8
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 2.3e-31 140.6 114 68.4
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 3.1e-31 140.2 136 58.1
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 6.8e-31 139.0 95 76.8
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.2e-28 130.2 156 51.9
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.4e-22 109.8 66 80.3
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.9e-17 94.4 57 80.7
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.5e-17 94.0 53 84.9
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.2e-16 91.7 73 65.8
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.4e-15 87.4 55 76.4
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 5.3e-15 86.3 49 79.6
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.4e-12 77.4 45 82.2
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.4e-12 77.4 45 82.2
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 2.8e-08 63.9 84 44.0


User provided reference genes

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