Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 1.9e-50 202.2 104 100.0
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.3e-41 172.9 109 86.2
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.3e-41 172.9 109 86.2
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.3e-19 99.8 85 74.1
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 5.3e-16 87.8 73 71.2
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 2.5e-13 79.0 71 66.2
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 7.2e-13 77.4 70 65.7
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 7.2e-13 77.4 74 59.5
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 9.4e-13 77.0 70 65.7
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 9.4e-13 77.0 74 59.5
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 9.4e-13 77.0 70 65.7
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.2e-12 76.6 70 65.7
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.2e-12 76.6 74 59.5
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 1.2e-12 76.6 70 65.7
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 1.6e-12 76.3 70 62.9
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.6e-12 76.3 70 64.3
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.6e-12 76.3 70 64.3
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.6e-12 76.3 70 64.3
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 1.6e-12 76.3 71 63.4
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.6e-12 76.3 70 64.3
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.6e-12 76.3 71 64.8
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.6e-12 76.3 70 64.3
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.6e-12 76.3 74 58.1
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.6e-12 76.3 70 64.3
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 2.1e-12 75.9 70 64.3
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 2.1e-12 75.9 70 64.3
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 2.1e-12 75.9 74 59.5
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.1e-12 75.9 74 59.5
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.7e-12 75.5 70 64.3
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.7e-12 75.5 70 64.3
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 2.7e-12 75.5 70 64.3
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 2.7e-12 75.5 70 62.9
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 3.6e-12 75.1 69 63.8
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 3.6e-12 75.1 71 63.4
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.6e-12 75.1 70 64.3
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.6e-12 75.1 70 64.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 3.6e-12 75.1 70 64.3
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 3.6e-12 75.1 70 62.9
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.6e-12 75.1 70 62.9
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.6e-12 75.1 70 62.9
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 3.6e-12 75.1 70 62.9
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.6e-12 74.7 71 62.0
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 4.6e-12 74.7 70 61.4
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 4.6e-12 74.7 79 57.0
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 6.1e-12 74.3 70 62.9
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 6.1e-12 74.3 71 60.6
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 6.1e-12 74.3 72 56.9
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 6.1e-12 74.3 70 64.3
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 7.9e-12 73.9 70 64.3
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 7.9e-12 73.9 70 64.3
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 7.9e-12 73.9 70 64.3
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 7.9e-12 73.9 70 64.3
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 7.9e-12 73.9 70 64.3
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.0e-11 73.6 70 60.0
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.0e-11 73.6 70 62.9
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.0e-11 73.6 71 62.0
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.0e-11 73.6 70 62.9
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 1.0e-11 73.6 70 62.9
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.0e-11 73.6 71 62.0
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.4e-11 73.2 70 62.9
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.4e-11 73.2 71 60.6
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-11 73.2 71 60.6
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 1.4e-11 73.2 71 60.6
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 1.4e-11 73.2 70 64.3
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.4e-11 73.2 70 61.4
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 1.4e-11 73.2 70 62.9
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 62.9
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 58.6
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 58.6
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 58.6
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 58.6
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 58.6
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.8e-11 72.8 70 62.9
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 62.9
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 62.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 65.7
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 62.9
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.8e-11 72.8 70 60.0
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.3e-11 72.4 70 60.0
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 2.3e-11 72.4 70 60.0
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.3e-11 72.4 70 60.0
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 2.3e-11 72.4 70 61.4
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.0e-11 72.0 70 62.9
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 3.0e-11 72.0 70 62.9
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 3.0e-11 72.0 70 58.6
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 3.0e-11 72.0 70 62.9
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 3.0e-11 72.0 70 62.9
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 3.0e-11 72.0 78 55.1
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 3.9e-11 71.6 70 60.0
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 3.9e-11 71.6 70 61.4
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 3.9e-11 71.6 69 62.3
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 3.9e-11 71.6 70 61.4
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 5.1e-11 71.2 70 60.0
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 5.1e-11 71.2 70 62.9
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 6.7e-11 70.9 70 60.0
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 6.7e-11 70.9 70 61.4
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 6.7e-11 70.9 70 61.4
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 6.7e-11 70.9 70 61.4
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 6.7e-11 70.9 70 62.9
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 6.7e-11 70.9 70 61.4
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 8.8e-11 70.5 70 60.0
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 1.1e-10 70.1 68 58.8
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 1.1e-10 70.1 70 61.4
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 1.1e-10 70.1 70 61.4
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.1e-10 70.1 70 61.4
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 1.5e-10 69.7 70 58.6
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.5e-10 69.7 78 56.4
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 4.3e-10 68.2 70 57.1
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 4.3e-10 68.2 70 57.1
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 4.3e-10 68.2 70 58.6
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 4.3e-10 68.2 70 58.6
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 4.3e-10 68.2 70 58.6
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 4.3e-10 68.2 71 56.3
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 5.7e-10 67.8 78 55.1
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 5.7e-10 67.8 78 55.1
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 9.7e-10 67.0 71 56.3
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 9.7e-10 67.0 70 58.6
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 1.7e-09 66.2 70 58.6
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 2.8e-09 65.5 71 54.9
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 2.8e-09 65.5 59 62.7
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.7e-09 65.1 71 54.9
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 8.2e-09 63.9 70 55.7
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.4e-08 62.4 64 56.2
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 2.0e-07 59.3 74 47.3
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 2.6e-07 58.9 70 50.0
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.7e-06 56.2 77 48.1
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.0e-06 54.7 37 73.0


User provided reference genes

Program Settings