Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 1.5e-114 416.4 242 100.0
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.6e-55 220.3 146 95.9
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 2.6e-50 203.0 145 86.9
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.1e-45 187.6 130 74.6
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.5e-45 186.4 116 81.9
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.5e-45 186.4 116 81.9
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.5e-45 186.4 116 81.9
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.3e-44 184.1 116 81.0
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 3.7e-44 182.6 116 79.3
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 4.8e-44 182.2 116 80.2
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 6.3e-44 181.8 129 72.9
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 6.3e-44 181.8 116 79.3
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 6.3e-44 181.8 116 79.3
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 1.1e-43 181.0 116 79.3
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 1.1e-43 181.0 116 75.0
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.1e-43 181.0 116 79.3
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.4e-43 180.6 116 80.2
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.4e-43 180.6 116 79.3
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.8e-43 180.3 116 80.2
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-43 180.3 116 79.3
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.8e-43 180.3 116 79.3
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.8e-43 180.3 116 78.4
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 2.4e-43 179.9 116 80.2
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 3.1e-43 179.5 116 76.7
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 3.1e-43 179.5 125 72.8
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 4.1e-43 179.1 116 79.3
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 5.3e-43 178.7 116 77.6
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 5.3e-43 178.7 116 77.6
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 5.3e-43 178.7 116 77.6
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 5.3e-43 178.7 116 77.6
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 9.1e-43 177.9 116 79.3
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 9.1e-43 177.9 116 78.4
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.5e-42 177.2 116 76.7
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 1.5e-42 177.2 116 78.4
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.5e-42 177.2 116 78.4
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.0e-42 176.8 116 76.7
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.0e-42 176.8 116 78.4
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.6e-42 176.4 116 77.6
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 3.4e-42 176.0 116 75.0
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 4.5e-42 175.6 145 77.9
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.5e-42 175.6 116 78.4
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.5e-42 175.6 116 78.4
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 4.5e-42 175.6 116 76.7
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 4.5e-42 175.6 116 76.7
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 5.9e-42 175.3 116 78.4
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 5.9e-42 175.3 116 77.6
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 7.7e-42 174.9 116 77.6
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 7.7e-42 174.9 115 78.3
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 7.7e-42 174.9 116 77.6
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 1.3e-41 174.1 116 76.7
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.3e-41 174.1 122 73.8
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 1.7e-41 173.7 114 77.2
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 2.9e-41 172.9 116 75.0
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.8e-41 172.6 116 75.0
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 3.8e-41 172.6 116 75.9
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 3.8e-41 172.6 116 75.9
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 5.0e-41 172.2 116 76.7
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 5.0e-41 172.2 116 75.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 6.5e-41 171.8 116 74.1
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 6.5e-41 171.8 116 75.9
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 6.5e-41 171.8 116 76.7
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 8.5e-41 171.4 116 74.1
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 2.5e-40 169.9 116 75.9
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.5e-40 169.9 116 75.0
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 3.2e-40 169.5 116 72.4
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 3.2e-40 169.5 116 73.3
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 4.2e-40 169.1 116 75.9
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 4.2e-40 169.1 116 75.9
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 7.2e-40 168.3 116 74.1
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 1.6e-39 167.2 116 75.0
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 1.6e-39 167.2 120 69.2
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 2.1e-39 166.8 116 71.6
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.7e-39 166.4 116 73.3
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 2.7e-39 166.4 119 68.9
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 3.6e-39 166.0 116 73.3
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 4.7e-39 165.6 123 69.1
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 4.7e-39 165.6 116 74.1
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 7.9e-39 164.9 119 71.4
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.4e-38 164.1 123 67.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.8e-38 163.7 123 68.3
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 3.0e-38 162.9 116 72.4
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.9e-38 162.5 116 70.7
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 3.9e-38 162.5 116 72.4
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 3.9e-38 162.5 116 74.1
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 3.9e-38 162.5 116 69.8
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 5.1e-38 162.2 128 68.0
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 6.7e-38 161.8 123 66.7
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 6.7e-38 161.8 120 67.5
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 6.7e-38 161.8 120 67.5
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 6.7e-38 161.8 120 67.5
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 6.7e-38 161.8 116 72.4
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 8.8e-38 161.4 116 70.7
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 8.8e-38 161.4 120 67.5
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.1e-37 161.0 116 71.6
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.5e-37 160.6 116 69.0
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 2.0e-37 160.2 116 71.6
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.6e-37 159.8 120 66.7
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 9.7e-37 157.9 116 69.8
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 9.7e-37 157.9 116 69.0
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 9.7e-37 157.9 121 66.9
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 9.7e-37 157.9 116 69.0
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 9.7e-37 157.9 116 69.0
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 9.7e-37 157.9 116 69.0
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.3e-36 157.5 116 69.8
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.7e-36 157.1 116 68.1
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 3.7e-36 156.0 116 72.4
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 6.3e-36 155.2 116 67.2
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 3.1e-35 152.9 116 65.5
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 4.1e-35 152.5 125 64.8
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.2e-34 151.0 96 79.2
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 2.6e-34 149.8 116 67.2
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.7e-33 147.1 116 62.1
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 6.5e-33 145.2 116 60.3
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.1e-32 144.4 116 69.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.1e-32 144.4 129 56.6
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 5.5e-32 142.1 187 47.6
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 9.4e-32 141.4 91 80.2
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.6e-31 140.6 94 77.7
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 2.1e-31 140.2 116 62.9
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.7e-31 139.0 90 77.8
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 4.7e-31 139.0 116 61.2
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 1.1e-29 134.4 92 75.0
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.1e-29 134.4 91 76.9
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.7e-28 129.4 116 54.3
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 1.8e-27 127.1 85 77.6
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 3.1e-27 126.3 116 54.3
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.6e-26 124.0 116 53.4
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 3.8e-25 119.4 115 53.9
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 9.4e-24 114.8 83 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 3.6e-23 112.8 133 44.4
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 3.0e-22 109.8 90 61.1
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 3.0e-22 109.8 90 61.1
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 4.0e-22 109.4 79 70.9
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.9e-17 93.2 105 54.3
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-15 87.8 73 71.2
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 3.6e-15 86.3 73 69.9
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 3.6e-15 86.3 73 69.9
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.0e-14 83.2 90 56.7
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 1.2e-13 81.3 55 72.7
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 2.0e-10 70.5 49 63.3


User provided reference genes

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