Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.9e-65 252.3 122 100.0
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 9.5e-65 250.0 122 99.2
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.8e-60 235.7 120 92.5
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.6e-56 221.5 122 84.4
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 8.0e-56 220.3 122 84.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 4.0e-55 218.0 122 82.8
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 2.0e-54 215.7 122 81.1
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 2.0e-54 215.7 122 81.1
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 5.8e-54 214.2 120 82.5
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 1.7e-53 212.6 118 82.2
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 3.7e-53 211.5 120 79.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.7e-53 211.5 122 81.1
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 1.5e-49 199.5 120 77.5
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.1e-47 193.4 109 81.7
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.2e-45 185.7 122 68.9
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.2e-43 179.9 124 67.7
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 5.1e-42 174.5 122 64.8
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.6e-40 169.5 122 63.1
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 4.7e-40 167.9 122 63.9
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.0e-38 162.5 120 60.8
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 7.8e-35 150.6 115 61.7
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.3e-34 149.1 105 64.8
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 3.6e-32 141.7 120 56.7
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 4.7e-32 141.4 120 53.3
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 6.2e-32 141.0 120 56.7
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 6.2e-32 141.0 115 56.5
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 2.4e-31 139.0 120 54.2
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 5.2e-31 137.9 126 51.6
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 6.8e-31 137.5 122 53.3
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.5e-30 136.3 118 56.8
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 2.0e-30 136.0 122 53.3
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 2.0e-30 136.0 127 52.8
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 9.9e-30 133.7 120 52.5
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 1.7e-29 132.9 120 51.7
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.2e-29 132.5 120 53.3
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 2.9e-29 132.1 122 54.9
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 2.9e-29 132.1 126 48.4
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 2.9e-29 132.1 126 48.4
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 2.9e-29 132.1 120 53.3
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.8e-29 131.7 120 52.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.8e-29 131.7 118 55.9
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 3.8e-29 131.7 127 53.5
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 4.9e-29 131.3 122 55.7
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.9e-29 131.3 120 52.5
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.9e-29 131.3 120 53.3
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 4.9e-29 131.3 120 50.8
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 6.4e-29 131.0 120 55.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 8.4e-29 130.6 119 52.9
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.4e-29 130.6 119 52.9
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 49.2
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 1.4e-28 129.8 126 47.6
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.9e-28 129.4 120 51.7
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 1.9e-28 129.4 120 49.2
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.9e-28 129.4 119 52.9
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 54.2
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 2.4e-28 129.0 120 53.3
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 3.2e-28 128.6 120 53.3
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 3.2e-28 128.6 120 53.3
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 3.2e-28 128.6 120 53.3
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 3.2e-28 128.6 120 53.3
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 3.2e-28 128.6 120 53.3
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 7.1e-28 127.5 119 51.3
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 7.1e-28 127.5 127 51.2
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 7.1e-28 127.5 120 52.5
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 52.5
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 9.3e-28 127.1 129 47.3
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 9.3e-28 127.1 120 53.3
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 52.5
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 52.5
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 52.5
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 53.3
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 50.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 49.2
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 52.5
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.2e-27 126.7 119 52.1
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.7e-27 125.6 120 52.5
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 4.6e-27 124.8 120 48.3
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 6.0e-27 124.4 119 50.4
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 6.0e-27 124.4 120 50.0
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.0e-26 123.6 120 52.5
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 51.7
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 47.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 2.3e-26 122.5 120 47.5
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 3.0e-26 122.1 117 49.6
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 6.6e-26 120.9 127 44.9
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.1e-25 120.2 120 49.2
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 1.1e-25 120.2 120 49.2
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 1.1e-25 120.2 120 49.2
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.5e-25 119.8 117 50.4
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.9e-25 119.4 127 46.5
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.5e-25 119.0 121 50.4
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.3e-24 116.7 122 50.0
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 2.1e-24 115.9 120 47.5
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 4.8e-24 114.8 122 49.2
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 5.3e-23 111.3 115 49.6
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 3.4e-22 108.6 115 45.2
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.2e-21 105.9 124 43.5
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 3.8e-21 105.1 113 46.9
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 2.4e-20 102.4 112 42.0
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 3.2e-20 102.1 123 42.3
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.1e-19 99.4 124 40.3
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 7.9e-19 97.4 97 45.4
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.0e-18 97.1 122 43.4
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.1e-17 93.6 74 59.5
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 5.6e-17 91.3 79 51.9
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 1.2e-14 83.6 154 31.2
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 3.4e-14 82.0 124 33.9
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 5.8e-14 81.3 53 66.0
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 4.9e-13 78.2 90 42.2
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.9e-12 76.3 62 56.5
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 1.9e-12 76.3 54 53.7
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 1.9e-12 76.3 87 44.8
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 7.1e-12 74.3 62 54.8
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 7.1e-12 74.3 80 45.0
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.2e-11 73.6 114 34.2
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.2e-11 73.6 115 33.0
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.8e-10 69.7 82 43.9
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.8e-10 69.7 63 44.4
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.5e-09 65.9 82 41.5
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 7.4e-09 64.3 53 56.6
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 1.3e-08 63.5 91 41.8
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.1e-08 62.8 71 46.5
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 6.2e-08 61.2 40 62.5
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 8.1e-08 60.8 134 28.4
Lsat_1_v5_gn_2_14240 Lactuca sativa HOM05D005168 ORTHO05D006358 2.4e-07 59.3 31 74.2
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 5.3e-07 58.2 67 44.8
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 5.3e-07 58.2 84 38.1
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 1.5e-06 56.6 57 43.9
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 2.6e-06 55.8 84 36.9
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 7.6e-06 54.3 52 50.0
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 7.6e-06 54.3 66 40.9
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 1.0e-05 53.9 54 50.0


User provided reference genes

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