Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 1.9e-133 479.2 243 100.0
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 2.8e-108 395.6 213 92.5
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 4.7e-108 394.8 213 92.0
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 4.9e-105 384.8 213 87.8
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 1.1e-104 383.6 213 87.3
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 3.2e-104 382.1 213 88.3
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 7.1e-104 380.9 213 84.0
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 7.1e-104 380.9 213 86.9
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 2.7e-103 379.0 213 87.3
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.0e-102 377.1 213 86.4
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 8.7e-102 374.0 213 86.4
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.9e-101 372.9 213 85.9
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 2.8e-100 369.0 213 84.0
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 3.6e-100 368.6 213 82.6
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 3.6e-100 368.6 213 82.2
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 8.1e-100 367.5 216 83.8
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 8.1e-100 367.5 213 85.4
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.1e-99 367.1 213 82.2
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 1.1e-99 367.1 213 84.0
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.4e-99 366.7 213 83.6
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-99 366.7 213 81.7
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 5.3e-99 364.8 244 80.3
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 6.9e-99 364.4 213 82.2
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 6.9e-99 364.4 213 82.2
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 6.9e-99 364.4 213 82.2
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 9.0e-99 364.0 213 83.1
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 1.5e-98 363.2 213 81.2
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 3.4e-98 362.1 213 80.8
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.4e-98 362.1 213 80.8
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.4e-98 362.1 213 81.2
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.8e-98 361.3 213 80.8
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 5.8e-98 361.3 213 79.8
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 1.3e-97 360.1 213 79.3
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 2.2e-97 359.4 213 79.3
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 2.2e-97 359.4 213 79.3
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 2.9e-97 359.0 213 79.3
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 2.9e-97 359.0 213 79.3
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 3.8e-97 358.6 213 80.3
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 4.9e-97 358.2 213 80.3
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 4.9e-97 358.2 213 82.2
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 6.4e-97 357.8 213 79.3
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.1e-96 357.1 213 79.8
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.4e-96 356.7 213 80.3
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 1.9e-96 356.3 213 80.3
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 1.9e-96 356.3 213 81.2
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.4e-96 355.9 213 81.7
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 2.4e-96 355.9 213 80.8
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 3.2e-96 355.5 215 82.8
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.2e-96 355.5 213 80.8
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 3.5e-95 352.1 214 79.9
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 4.6e-95 351.7 213 77.5
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 1.0e-94 350.5 213 77.5
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.0e-94 350.5 213 80.8
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 1.0e-94 350.5 213 77.5
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 1.3e-94 350.1 213 77.0
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 1.3e-94 350.1 223 75.3
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 2.3e-94 349.4 213 79.8
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 2.3e-94 349.4 224 75.0
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 3.0e-94 349.0 213 77.0
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 1.1e-93 347.1 213 77.0
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 1.1e-93 347.1 213 77.5
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.1e-93 347.1 213 77.9
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 1.1e-93 347.1 223 78.9
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 5.6e-93 344.7 213 76.5
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 7.3e-93 344.4 213 76.1
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.6e-92 343.2 202 82.7
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.6e-92 343.2 214 78.0
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 2.8e-92 342.4 213 76.1
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 3.6e-92 342.0 214 78.5
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 3.6e-92 342.0 213 77.5
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 4.8e-92 341.7 213 76.1
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 4.8e-92 341.7 213 77.0
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 8.1e-92 340.9 213 75.1
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 4.0e-91 338.6 217 77.0
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 5.3e-91 338.2 213 76.5
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 6.9e-91 337.8 239 71.5
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 9.0e-91 337.4 249 69.9
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 1.2e-90 337.0 213 74.6
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 1.2e-90 337.0 197 81.7
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.4e-90 335.5 197 82.7
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 4.5e-90 335.1 213 76.1
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.8e-90 334.7 208 76.4
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.7e-89 333.2 218 74.8
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.7e-89 333.2 214 74.8
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 1.7e-89 333.2 197 83.2
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.7e-89 333.2 214 75.2
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 3.8e-89 332.0 214 76.2
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 6.4e-89 331.3 214 75.2
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.1e-88 330.5 214 73.4
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 2.4e-88 329.3 213 75.1
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 3.2e-88 328.9 213 74.2
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 1.2e-87 327.0 213 74.2
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.2e-87 327.0 215 74.9
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 1.6e-87 326.6 216 75.5
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.7e-87 325.9 217 75.1
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 3.5e-87 325.5 213 73.2
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 4.6e-87 325.1 272 61.8
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 1.8e-86 323.2 236 69.1
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 3.0e-86 322.4 217 74.7
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 3.0e-86 322.4 214 72.4
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 3.0e-86 322.4 198 76.8
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 3.9e-86 322.0 198 77.3
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 5.1e-86 321.6 214 72.9
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 5.1e-86 321.6 200 80.0
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 6.7e-86 321.2 217 73.7
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 6.7e-86 321.2 217 73.7
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 4.3e-85 318.5 217 72.4
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 9.6e-85 317.4 213 74.2
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.1e-84 316.2 213 70.4
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.7e-84 315.5 217 71.4
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 6.2e-84 314.7 217 72.8
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.4e-83 313.5 217 72.4
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 1.4e-83 313.5 217 72.8
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 1.4e-83 313.5 217 72.4
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 1.8e-83 313.2 197 76.1
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 3.1e-83 312.4 214 72.0
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 5.3e-83 311.6 217 71.9
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 5.3e-83 311.6 217 72.4
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 1.2e-82 310.5 216 72.7
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 2.0e-82 309.7 217 71.9
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 3.4e-82 308.9 214 72.0
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 5.8e-82 308.1 212 71.2
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.6e-82 307.8 235 65.5
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 4.9e-81 305.1 213 67.1
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 4.9e-81 305.1 213 67.1
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.1e-80 303.9 212 72.6
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 7.1e-80 301.2 213 71.4
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 3.5e-79 298.9 202 73.3
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 6.0e-79 298.1 198 69.2
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 6.7e-78 294.7 215 69.8
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 6.7e-78 294.7 215 69.8
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 3.7e-76 288.9 172 80.8
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 6.2e-76 288.1 213 68.5
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.8e-75 286.6 213 66.7
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.1e-75 285.8 213 68.1
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 3.1e-75 285.8 162 84.0
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 1.5e-74 283.5 213 62.4
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 7.6e-74 281.2 202 70.3
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.9e-72 276.6 179 74.9
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 4.2e-72 275.4 213 68.1
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.5e-72 275.0 214 70.1
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 9.3e-72 274.2 212 61.3
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 2.5e-69 266.2 206 67.5
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 2.9e-57 226.1 217 57.1
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 2.5e-56 223.0 120 86.7
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 1.8e-54 216.9 184 63.6
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 1.5e-53 213.8 172 65.1
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 5.7e-53 211.8 173 59.5
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 5.7e-53 211.8 234 54.3
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.7e-52 210.3 128 78.9
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 2.2e-52 209.9 172 62.2
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 2.2e-52 209.9 173 60.1
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 5.5e-48 195.3 208 54.8
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.5e-45 187.2 203 53.7
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 7.7e-42 174.9 122 68.9
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 7.2e-40 168.3 180 53.3
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 5.3e-35 152.1 223 40.8
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.0e-30 137.9 85 72.9
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.1e-27 127.9 142 52.1
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 5.5e-24 115.5 120 50.8
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 7.2e-24 115.2 147 46.9
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 8.3e-20 101.7 196 32.1
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.8e-19 100.5 140 50.7
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.4e-19 100.1 94 55.3
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.4e-14 84.3 74 64.9
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.1e-06 58.2 69 49.3
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 4.0e-06 56.2 49 57.1


User provided reference genes

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