Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 9.2e-173 610.1 311 100.0
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 1.5e-130 469.9 313 79.9
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.9e-130 469.5 313 78.9
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 5.8e-127 458.0 313 77.0
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 2.2e-126 456.1 313 76.4
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 8.4e-126 454.1 313 74.1
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 8.4e-126 454.1 313 76.4
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 9.3e-125 450.7 311 75.6
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.0e-123 447.2 313 74.8
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 8.7e-123 444.1 313 73.8
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 4.3e-122 441.8 313 74.1
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 8.2e-121 437.6 313 72.5
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.4e-120 436.8 311 72.0
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 2.4e-120 436.0 313 72.8
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 4.0e-120 435.3 313 71.6
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 5.3e-120 434.9 313 72.2
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.2e-119 433.7 313 70.9
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.5e-119 433.3 313 71.9
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.5e-119 433.3 313 71.9
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 2.0e-119 433.0 313 70.3
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.0e-119 433.0 313 71.6
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.0e-119 433.0 319 73.4
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 4.5e-119 431.8 313 70.6
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 4.5e-119 431.8 312 69.9
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 5.8e-119 431.4 313 69.6
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.0e-118 430.6 313 70.0
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 1.3e-118 430.3 313 69.6
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 1.3e-118 430.3 313 70.3
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 2.2e-118 429.5 313 71.9
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 2.9e-118 429.1 313 70.9
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.9e-118 429.1 313 69.6
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 2.9e-118 429.1 313 70.3
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 3.8e-118 428.7 313 70.6
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-117 426.8 313 69.6
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 4.2e-117 425.2 313 68.4
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 4.2e-117 425.2 313 69.6
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 7.1e-117 424.5 312 69.9
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 9.3e-117 424.1 313 68.1
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 2.1e-116 422.9 313 71.9
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.6e-116 421.8 313 70.3
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 1.3e-115 420.2 300 72.3
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.3e-115 419.5 315 71.1
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 3.9e-115 418.7 313 70.6
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 3.9e-115 418.7 313 67.4
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 6.7e-115 417.9 313 68.1
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 1.1e-114 417.2 313 68.1
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 3.3e-114 415.6 313 69.3
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 3.3e-114 415.6 311 70.4
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 4.3e-114 415.2 313 67.4
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 4.3e-114 415.2 313 67.4
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 5.7e-114 414.8 313 67.1
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 7.4e-114 414.5 313 70.3
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 7.4e-114 414.5 313 67.4
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 9.7e-114 414.1 324 65.4
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 1.3e-113 413.7 313 68.1
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.3e-113 413.7 313 68.7
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.6e-113 413.3 313 69.0
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 2.8e-113 412.5 313 67.4
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 3.7e-113 412.1 313 67.7
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 2.4e-112 409.5 313 67.4
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 5.3e-112 408.3 310 71.0
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 1.5e-111 406.8 313 67.1
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 3.4e-111 405.6 313 67.1
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.4e-111 405.6 297 71.4
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 4.5e-111 405.2 314 67.5
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.0e-110 404.1 313 66.8
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 1.3e-110 403.7 313 67.4
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.3e-110 403.7 347 63.1
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 1.7e-110 403.3 297 71.0
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 8.5e-110 401.0 313 65.2
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 2.5e-109 399.4 311 67.2
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 2.5e-109 399.4 313 65.5
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.2e-109 399.1 308 66.6
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 3.2e-109 399.1 313 67.4
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 4.2e-109 398.7 309 66.7
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 4.2e-109 398.7 297 70.7
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 1.6e-108 396.7 317 65.9
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 1.4e-107 393.7 372 58.1
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 2.0e-106 389.8 313 64.9
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 4.3e-106 388.7 314 65.3
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 5.7e-106 388.3 313 64.5
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 2.2e-105 386.3 313 64.2
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 2.2e-105 386.3 311 65.6
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.8e-105 386.0 317 63.7
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 1.4e-104 383.6 312 63.8
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 5.3e-104 381.7 314 63.1
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.2e-103 380.6 314 63.1
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.2e-103 380.6 298 67.8
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.0e-103 379.8 311 65.9
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 2.6e-103 379.4 314 62.4
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 4.5e-103 378.6 316 64.9
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 5.9e-103 378.3 314 63.7
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 1.0e-102 377.5 278 72.3
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.3e-102 377.1 314 61.5
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.9e-102 375.9 313 63.9
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 3.8e-102 375.6 317 63.4
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 1.4e-101 373.6 314 63.4
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 1.4e-101 373.6 297 64.3
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 4.2e-101 372.1 314 61.5
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 4.2e-101 372.1 231 81.8
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 5.5e-101 371.7 317 63.1
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 5.5e-101 371.7 317 62.5
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 7.2e-101 371.3 314 61.8
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 9.4e-101 370.9 317 62.5
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 3.6e-100 369.0 326 61.0
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 3.6e-100 369.0 310 63.2
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 4.7e-100 368.6 313 62.3
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 6.1e-100 368.2 317 61.5
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.0e-99 367.5 313 63.9
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.3e-99 366.3 317 60.9
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 5.1e-99 365.2 317 61.8
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 6.7e-99 364.8 312 61.5
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 6.7e-99 364.8 313 60.1
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 6.7e-99 364.8 313 60.1
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.1e-98 364.0 317 61.5
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 1.1e-98 364.0 317 61.8
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 1.1e-98 364.0 317 61.5
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 1.5e-98 363.6 317 60.6
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 2.0e-98 363.2 244 80.3
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 2.6e-98 362.8 356 55.6
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 3.3e-98 362.5 317 61.2
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.3e-97 360.5 317 61.2
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 1.1e-96 357.5 320 62.5
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.8e-96 356.7 312 60.9
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.8e-96 356.7 312 60.9
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 1.3e-94 350.5 307 60.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 2.2e-94 349.7 302 61.6
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 2.2e-94 349.7 271 65.3
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.2e-94 349.7 312 59.6
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.0e-91 339.3 335 55.8
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 1.7e-89 333.6 311 60.5
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 3.7e-89 332.4 302 59.6
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 8.2e-89 331.3 314 58.3
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.4e-88 329.7 281 61.9
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 9.1e-88 327.8 314 55.1
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 7.7e-87 324.7 311 58.2
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.2e-84 317.4 306 57.8
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 3.6e-84 315.8 244 66.4
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.6e-84 315.8 297 56.9
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.2e-83 312.0 289 60.9
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 1.7e-81 307.0 336 55.4
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 3.7e-81 305.8 254 62.6
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.5e-77 293.9 239 65.7
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 7.5e-74 281.6 298 50.7
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 8.0e-68 261.5 280 54.3
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 2.8e-65 253.1 315 47.6
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 1.1e-61 241.1 244 51.6
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 4.7e-60 235.7 309 46.6
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 3.7e-49 199.5 201 55.7
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 1.0e-46 191.4 120 77.5
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.6e-44 184.1 299 43.1
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 8.9e-43 178.3 209 55.0
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 2.6e-42 176.8 300 38.0
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 1.4e-40 171.0 204 47.1
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.2e-39 167.9 345 38.3
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 2.1e-39 167.2 204 47.1
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 6.4e-33 145.6 136 56.6
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 3.3e-29 133.3 209 42.6
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 8.7e-22 108.6 66 83.3
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.3e-20 104.8 164 41.5
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.6e-20 104.4 184 39.7
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 2.8e-20 103.6 107 50.5
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.0e-19 99.8 259 33.6
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 1.2e-18 98.2 251 27.5
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.2e-18 98.2 118 45.8
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.8e-14 84.3 51 86.3
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 1.1e-13 81.6 304 28.6
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.5e-13 81.3 104 50.0
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 3.7e-12 76.6 94 45.7


User provided reference genes

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