Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 3.1e-75 285.0 141 100.0
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 1.5e-29 133.3 100 72.0
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 7.4e-29 131.0 100 70.0
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 1.6e-28 129.8 100 70.0
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 6.3e-28 127.9 100 68.0
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.1e-27 127.1 101 68.3
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 3.4e-26 122.1 100 65.0
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 6.5e-25 117.9 114 57.9
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.4e-24 116.7 101 61.4
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 1.4e-24 116.7 114 57.0
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.4e-24 116.7 98 63.3
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.4e-24 116.7 98 63.3
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.4e-24 116.7 98 63.3
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 1.9e-24 116.3 93 65.6
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 1.9e-24 116.3 100 63.0
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 2.5e-24 115.9 113 58.4
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 5.5e-24 114.8 95 63.2
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 5.5e-24 114.8 95 63.2
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 5.5e-24 114.8 97 61.9
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 7.2e-24 114.4 98 62.2
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 9.4e-24 114.0 93 64.5
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 9.4e-24 114.0 98 61.2
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 9.4e-24 114.0 93 64.5
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 1.2e-23 113.6 94 62.8
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 1.2e-23 113.6 115 55.7
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 1.2e-23 113.6 101 62.4
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 1.2e-23 113.6 115 55.7
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 1.2e-23 113.6 115 55.7
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 1.2e-23 113.6 115 55.7
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 1.2e-23 113.6 115 55.7
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.2e-23 113.6 94 63.8
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 1.2e-23 113.6 97 60.8
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 1.6e-23 113.2 110 57.3
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 1.6e-23 113.2 120 55.0
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 1.6e-23 113.2 120 55.0
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 1.6e-23 113.2 93 61.3
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-23 113.2 95 61.1
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-23 113.2 95 61.1
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.6e-23 113.2 95 61.1
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.6e-23 113.2 95 61.1
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 1.6e-23 113.2 94 62.8
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 1.6e-23 113.2 110 57.3
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 2.1e-23 112.8 110 57.3
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 2.1e-23 112.8 110 57.3
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 2.1e-23 112.8 98 60.2
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 2.1e-23 112.8 89 67.4
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 2.1e-23 112.8 93 62.4
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 2.1e-23 112.8 97 60.8
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 2.7e-23 112.5 95 62.1
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.7e-23 112.5 93 64.5
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 3.6e-23 112.1 101 61.4
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.6e-23 112.1 94 62.8
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 3.6e-23 112.1 115 54.8
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 3.6e-23 112.1 94 63.8
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 3.6e-23 112.1 97 59.8
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 4.6e-23 111.7 93 62.4
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 6.1e-23 111.3 96 60.4
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 6.1e-23 111.3 110 56.4
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 6.1e-23 111.3 94 62.8
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 6.1e-23 111.3 94 62.8
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 6.1e-23 111.3 97 59.8
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 6.1e-23 111.3 93 61.3
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 6.1e-23 111.3 93 61.3
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 6.1e-23 111.3 93 61.3
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 6.1e-23 111.3 96 61.5
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 6.1e-23 111.3 97 60.8
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 6.1e-23 111.3 94 64.9
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 6.1e-23 111.3 97 60.8
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 7.9e-23 110.9 97 60.8
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 7.9e-23 110.9 97 60.8
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 7.9e-23 110.9 93 63.4
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 7.9e-23 110.9 93 63.4
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 1.0e-22 110.5 110 56.4
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 1.0e-22 110.5 94 61.7
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 1.0e-22 110.5 94 61.7
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 1.0e-22 110.5 94 60.6
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.0e-22 110.5 112 55.4
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 1.0e-22 110.5 97 59.8
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 1.4e-22 110.2 93 63.4
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.4e-22 110.2 110 56.4
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 1.8e-22 109.8 110 55.5
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 1.8e-22 109.8 101 58.4
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 3.0e-22 109.0 110 55.5
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 3.0e-22 109.0 89 62.9
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 3.9e-22 108.6 101 56.4
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 3.9e-22 108.6 98 60.2
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 3.9e-22 108.6 101 57.4
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 3.9e-22 108.6 90 61.1
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 3.9e-22 108.6 94 62.8
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 5.1e-22 108.2 101 56.4
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 5.1e-22 108.2 96 59.4
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 5.1e-22 108.2 92 60.9
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 6.7e-22 107.8 93 60.2
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 8.8e-22 107.5 93 62.4
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 1.1e-21 107.1 93 60.2
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 1.1e-21 107.1 95 57.9
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 1.5e-21 106.7 94 59.6
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.5e-21 106.7 96 58.3
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 2.0e-21 106.3 95 57.9
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 2.6e-21 105.9 96 60.4
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 7.4e-21 104.4 99 56.6
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 9.7e-21 104.0 100 59.0
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.3e-20 103.6 94 60.6
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 1.3e-20 103.6 123 47.2
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 1.3e-20 103.6 100 53.0
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.3e-20 103.6 96 56.2
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 1.7e-20 103.2 91 60.4
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.7e-20 103.2 96 59.4
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 2.2e-20 102.8 147 42.9
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 2.2e-20 102.8 102 56.9
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 3.7e-20 102.1 83 66.3
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 3.7e-20 102.1 83 66.3
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 4.8e-20 101.7 99 57.6
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 2.4e-19 99.4 85 60.0
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 5.3e-19 98.2 84 61.9
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.5e-18 96.7 124 49.2
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 2.6e-18 95.9 88 58.0
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 1.0e-17 94.0 115 48.7
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.3e-17 93.6 50 82.0
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.5e-17 91.3 56 76.8
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 8.5e-17 90.9 92 51.1
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 8.5e-17 90.9 92 51.1
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 1.1e-16 90.5 50 80.0
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 1.1e-16 90.5 85 55.3
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 5.5e-16 88.2 91 52.7
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 5.5e-16 88.2 84 52.4
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.6e-15 85.5 55 67.3
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 4.7e-15 85.1 56 73.2
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 5.2e-14 81.6 45 80.0
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 2.6e-13 79.3 50 72.0
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 1.3e-12 77.0 92 48.9
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 4.8e-12 75.1 101 47.5
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 1.6e-10 70.1 66 59.1
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.9e-09 65.9 84 40.5
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.1e-08 63.9 98 40.8
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.2e-08 62.4 70 50.0
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 7.2e-08 61.2 44 68.2
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.4e-06 57.0 95 33.7


User provided reference genes

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