Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.9e-242 842.0 410 100.0
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 6.2e-193 677.6 410 78.0
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 2.1e-180 636.0 403 74.4
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 6.0e-180 634.4 402 74.6
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 1.8e-160 569.7 414 66.4
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 4.0e-160 568.5 398 65.1
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 2.5e-157 559.3 405 64.4
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 3.5e-156 555.4 398 62.6
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.1e-154 550.4 406 64.0
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.6e-153 546.6 398 64.8
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 4.8e-153 545.0 398 63.6
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.8e-152 543.1 408 62.5
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 3.1e-152 542.3 390 64.1
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 9.0e-152 540.8 400 65.0
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 9.0e-152 540.8 398 64.3
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 2.0e-151 539.7 403 64.0
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 5.8e-151 538.1 400 62.5
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 1.0e-150 537.3 398 61.8
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 1.3e-150 537.0 408 63.0
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.3e-150 537.0 407 62.4
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 2.9e-150 535.8 400 62.8
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 3.8e-150 535.4 399 64.2
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 6.5e-150 534.6 398 63.3
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 6.5e-150 534.6 398 63.3
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 8.4e-150 534.3 409 63.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 1.1e-149 533.9 410 62.9
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 1.1e-149 533.9 402 62.9
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 1.4e-149 533.5 410 62.9
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.4e-149 533.5 385 65.7
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 1.9e-149 533.1 410 62.9
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 3.2e-149 532.3 410 62.7
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 3.2e-149 532.3 410 62.7
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 4.2e-149 531.9 410 62.9
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 4.2e-149 531.9 398 64.3
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 5.5e-149 531.6 402 62.9
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 7.1e-149 531.2 403 62.5
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 7.1e-149 531.2 408 62.3
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 7.1e-149 531.2 411 63.5
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 7.9e-148 527.7 411 62.5
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 2.3e-147 526.2 411 62.3
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 3.0e-147 525.8 421 61.0
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 5.1e-147 525.0 410 62.4
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 5.1e-147 525.0 388 63.1
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.7e-147 524.6 416 60.1
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 6.7e-147 524.6 402 62.9
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 6.7e-147 524.6 398 62.3
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 8.7e-147 524.2 407 59.2
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 8.7e-147 524.2 401 62.3
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 1.1e-146 523.9 412 62.1
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.9e-146 523.1 406 61.6
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 3.3e-146 522.3 402 63.2
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.7e-146 521.5 392 62.2
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.6e-145 520.0 407 61.9
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 1.6e-145 520.0 394 63.5
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 3.7e-145 518.8 411 61.6
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 3.7e-145 518.8 405 61.2
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 4.8e-145 518.5 413 62.0
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 4.8e-145 518.5 400 61.5
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 6.3e-145 518.1 394 62.9
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 6.3e-145 518.1 400 61.5
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 1.1e-144 517.3 396 60.1
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.4e-144 516.9 407 60.7
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.3e-144 515.0 400 61.5
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 9.0e-144 514.2 400 61.2
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 2.0e-143 513.1 424 59.0
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 2.0e-143 513.1 400 61.5
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 2.6e-143 512.7 388 60.8
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 2.6e-143 512.7 399 60.7
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 3.4e-143 512.3 415 60.0
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 4.5e-143 511.9 406 60.3
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 7.7e-143 511.1 402 60.9
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.7e-142 510.0 409 61.6
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 2.2e-142 509.6 401 59.9
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 2.9e-142 509.2 400 62.0
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.9e-142 509.2 402 61.9
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.9e-141 506.5 395 61.5
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 4.2e-141 505.4 407 58.2
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 5.5e-141 505.0 395 61.8
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 1.2e-140 503.8 395 61.3
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.2e-140 503.8 391 61.9
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 1.6e-140 503.4 395 61.3
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.1e-140 503.1 394 60.9
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.6e-140 502.3 395 60.8
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 6.1e-140 501.5 390 60.8
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.1e-140 501.5 395 60.8
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 1.0e-139 500.7 399 59.4
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 1.0e-139 500.7 384 61.2
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.4e-139 500.4 397 58.7
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.4e-139 500.4 390 59.0
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.3e-139 499.6 395 61.0
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.3e-139 499.6 383 59.8
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 3.0e-139 499.2 405 57.8
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 3.9e-139 498.8 395 61.0
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 8.8e-139 497.7 416 57.9
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.5e-138 496.9 400 57.5
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 2.0e-138 496.5 390 60.3
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-138 496.5 389 59.9
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-138 496.5 389 59.9
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 7.4e-138 494.6 409 59.9
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.4e-136 490.3 404 58.4
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.1e-136 488.8 392 59.2
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 5.3e-136 488.4 396 59.6
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.5e-135 486.9 392 59.2
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 4.5e-135 485.3 391 57.8
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 1.0e-134 484.2 396 59.1
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 1.7e-134 483.4 393 58.8
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 3.8e-134 482.3 384 58.1
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 6.5e-134 481.5 388 58.2
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 1.4e-133 480.3 384 58.9
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 9.4e-133 477.6 383 58.0
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.4e-131 473.8 374 59.4
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 1.4e-131 473.8 374 59.4
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 1.1e-130 470.7 394 58.9
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 4.4e-130 468.8 396 56.1
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.8e-129 466.1 385 57.9
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 7.0e-128 461.5 387 55.6
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.2e-127 460.7 416 55.3
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 7.4e-122 441.4 405 53.3
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 9.7e-122 441.0 397 57.2
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 1.2e-119 434.1 407 52.8
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 7.7e-119 431.4 406 53.4
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 5.5e-117 425.2 393 51.7
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 9.1e-112 407.9 399 52.4
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 6.5e-110 401.7 404 51.7
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.6e-108 397.1 378 53.2
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 8.0e-108 394.8 408 46.8
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.4e-104 384.0 406 46.8
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 5.0e-102 375.6 395 49.6
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 3.6e-100 369.4 398 46.2
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 3.4e-98 362.8 410 46.1
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 1.0e-94 351.3 404 43.6
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 8.6e-94 348.2 398 47.5
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 5.6e-93 345.5 413 47.5
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.7e-87 326.6 398 46.0
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 6.6e-86 322.0 410 45.1
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 6.8e-83 312.0 257 58.0
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 9.8e-82 308.1 395 42.5
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 1.6e-79 300.8 400 44.5
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 2.7e-79 300.1 406 42.6
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 4.6e-71 272.7 184 66.8
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 6.2e-68 262.3 285 48.1
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 2.0e-66 257.3 398 38.4
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 2.2e-57 227.3 427 32.3
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-53 214.9 158 60.8
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 4.2e-48 196.4 228 43.4
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.6e-42 175.6 387 30.5
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 6.7e-38 162.5 156 50.6
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 1.5e-34 151.4 139 57.6
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 4.2e-32 143.3 113 55.8
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 3.3e-29 133.7 320 27.8
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 6.9e-27 125.9 78 73.1
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 9.1e-19 99.0 411 25.3
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 1.9e-08 64.7 60 53.3
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 4.2e-08 63.5 411 24.1
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 7.2e-08 62.8 39 66.7
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 1.0e-06 58.9 45 53.3


User provided reference genes

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