Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 4.6e-129 464.5 229 100.0
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 7.9e-97 357.5 229 76.9
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 6.7e-96 354.4 229 76.4
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 3.1e-93 345.5 230 76.5
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 2.7e-89 332.4 229 72.9
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 9.1e-85 317.4 231 69.7
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 6.5e-83 311.2 240 68.3
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 1.3e-75 287.0 229 64.2
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 6.5e-75 284.6 230 63.0
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 1.9e-74 283.1 235 63.8
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 2.7e-73 279.3 237 62.9
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.3e-72 276.2 228 62.3
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.2e-72 275.0 228 63.2
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.5e-71 273.5 236 63.6
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 1.5e-71 273.5 236 63.6
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 2.8e-70 269.2 229 61.6
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 3.7e-70 268.9 231 61.5
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 8.2e-70 267.7 231 61.9
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 4.1e-69 265.4 230 60.4
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 2.6e-68 262.7 232 61.2
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 3.5e-68 262.3 249 58.2
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 2.2e-67 259.6 237 61.2
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 8.5e-67 257.7 234 62.4
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.5e-66 256.9 230 58.3
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 3.2e-66 255.8 242 57.4
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 3.2e-66 255.8 229 59.0
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 4.2e-66 255.4 246 58.5
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 5.5e-66 255.0 229 60.7
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 5.5e-66 255.0 229 59.4
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 9.4e-66 254.2 245 58.4
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 9.4e-66 254.2 202 64.4
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 1.2e-65 253.8 229 60.3
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.2e-65 253.8 228 59.2
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 2.7e-65 252.7 229 61.1
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 3.6e-65 252.3 231 61.0
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 4.7e-65 251.9 229 59.4
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 1.0e-64 250.8 239 59.0
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 2.3e-64 249.6 229 59.0
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 5.2e-64 248.4 232 58.6
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 8.8e-64 247.7 233 56.7
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.2e-63 247.3 193 65.3
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 2.0e-63 246.5 229 57.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 2.6e-63 246.1 240 55.4
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 2.6e-63 246.1 230 57.0
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 3.4e-63 245.7 229 57.2
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 3.4e-63 245.7 229 57.2
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.3e-62 243.8 206 62.6
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.2e-62 243.0 228 57.5
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.2e-62 243.0 231 55.4
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 6.3e-62 241.5 229 58.1
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 4.1e-61 238.8 229 55.0
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 4.1e-61 238.8 233 54.5
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 5.3e-61 238.4 232 56.0
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 7.0e-61 238.0 233 54.5
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.2e-60 237.3 235 54.0
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 1.2e-60 237.3 184 62.0
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 2.0e-60 236.5 233 56.2
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.0e-60 236.5 226 56.2
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 2.0e-60 236.5 231 54.5
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.7e-60 236.1 232 55.2
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 3.5e-60 235.7 233 54.1
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 3.5e-60 235.7 241 56.0
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 1.3e-59 233.8 232 54.7
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 2.2e-59 233.0 230 54.8
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 2.2e-59 233.0 230 54.8
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 6.5e-59 231.5 246 52.8
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 6.5e-59 231.5 236 53.4
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 8.5e-59 231.1 158 70.3
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.1e-58 230.7 234 55.1
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 1.9e-58 229.9 231 55.4
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 2.5e-58 229.6 259 50.2
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 2.5e-58 229.6 202 57.9
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 2.5e-58 229.6 152 72.4
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 4.2e-58 228.8 212 59.4
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 5.5e-58 228.4 236 52.5
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 5.5e-58 228.4 218 53.7
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 5.5e-58 228.4 237 53.6
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 1.2e-57 227.3 219 57.1
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.2e-57 227.3 227 54.2
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 2.1e-57 226.5 236 53.8
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 2.7e-57 226.1 229 55.9
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 2.7e-57 226.1 225 52.9
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 4.7e-57 225.3 242 52.1
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 6.1e-57 224.9 200 58.5
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 1.4e-56 223.8 234 53.4
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 2.3e-56 223.0 228 52.2
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.2e-55 220.7 229 52.8
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 2.6e-55 219.5 202 56.9
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 5.7e-55 218.4 229 51.5
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 9.8e-55 217.6 235 52.3
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 9.8e-55 217.6 234 51.7
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 1.3e-54 217.2 247 51.4
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.7e-54 216.9 245 51.0
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 2.8e-54 216.1 210 56.7
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.8e-54 216.1 249 50.2
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 3.7e-54 215.7 239 53.1
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 4.8e-54 215.3 238 52.1
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 4.8e-54 215.3 246 50.8
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 8.3e-54 214.5 242 50.0
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 8.3e-54 214.5 255 49.4
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.1e-53 214.2 240 49.6
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 1.1e-53 214.2 233 52.8
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.4e-53 213.8 186 58.6
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 1.8e-53 213.4 198 55.6
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.8e-53 213.4 184 58.2
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 3.1e-53 212.6 233 52.8
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.2e-52 210.7 236 51.3
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 1.2e-52 210.7 229 52.4
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 1.6e-52 210.3 186 58.1
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 2.0e-52 209.9 213 55.4
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 2.7e-52 209.5 238 51.3
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 4.5e-52 208.8 190 56.8
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 5.9e-52 208.4 238 51.3
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 1.7e-51 206.8 148 67.6
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 2.3e-51 206.5 151 65.6
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 2.9e-51 206.1 241 49.8
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 2.9e-51 206.1 244 51.2
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 5.0e-51 205.3 231 50.2
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 6.6e-51 204.9 230 49.6
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 1.1e-50 204.1 191 57.1
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 1.9e-50 203.4 242 49.2
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.9e-50 203.4 238 49.6
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 1.6e-49 200.3 130 71.5
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 1.4e-48 197.2 228 48.7
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 1.8e-48 196.8 185 57.3
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 5.7e-47 191.8 232 47.8
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 7.5e-47 191.4 144 64.6
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 2.2e-46 189.9 200 50.5
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 4.9e-46 188.7 163 55.8
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 8.3e-46 188.0 219 48.9
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 4.1e-45 185.7 257 44.4
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 7.8e-44 181.4 238 45.4
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.0e-43 181.0 160 58.1
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 8.0e-41 171.4 232 45.7
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 5.2e-40 168.7 134 64.9
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.9e-38 162.9 142 57.0
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 1.3e-35 154.1 128 59.4
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 1.4e-32 144.1 206 45.1
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 5.2e-32 142.1 236 41.1
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 4.9e-30 135.6 246 40.2
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 4.0e-24 115.9 227 34.8
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 2.2e-22 110.2 183 43.2
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 2.4e-21 106.7 73 68.5
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 4.1e-21 105.9 185 41.6
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 1.3e-19 100.9 71 66.2
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 7.3e-18 95.1 64 67.2
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.1e-16 91.3 56 71.4
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.8e-16 90.5 55 72.7
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 4.0e-16 89.4 85 56.5
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 2.1e-12 77.0 79 48.1
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 3.0e-11 73.2 119 42.9
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 1.5e-10 70.9 72 48.6
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 4.8e-09 65.9 49 61.2
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 8.1e-09 65.1 139 38.1
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 1.1e-08 64.7 209 30.1
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 4.0e-08 62.8 70 42.9
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.2e-07 61.2 36 69.4


User provided reference genes

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