Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08440 Striga asiatica HOM05D008044 ORTHO05D010106 1.8e-92 342.4 159 100.0
SGA_v2.0_scaffold44G16829 Striga asiatica HOM05D008044 ORTHO05D010106 3.4e-54 215.3 161 65.8
MSTRG.8632 Avicennia marina HOM05D008044 ORTHO05D010106 5.7e-54 214.5 160 64.4
Migut.F00176 Erythranthe guttata HOM05D008044 ORTHO05D010106 1.1e-52 210.3 160 64.4
DCAR_020347 Daucus carota HOM05D008044 ORTHO05D010106 1.8e-47 193.0 162 58.0
Manes.01G037300 Manihot esculenta HOM05D008044 ORTHO05D010106 4.4e-46 188.3 164 58.5
Thecc.03G204500 Theobroma cacao HOM05D008044 ORTHO05D010106 7.5e-46 187.6 165 54.5
Sed0010771 Sechium edule HOM05D008044 ORTHO05D010106 1.7e-45 186.4 166 57.2
PGSC0003DMG400018537 Solanum tuberosum HOM05D008044 ORTHO05D010106 3.7e-45 185.3 159 56.6
CsaV3_3G019660 Cucumis sativus L. HOM05D008044 ORTHO05D010106 1.4e-44 183.3 163 57.7
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 3.2e-44 182.2 162 57.4
MELO3C019381.2 Cucumis melo HOM05D008044 ORTHO05D010106 5.4e-44 181.4 163 57.7
CiPaw.06G043900 Carya illinoinensis HOM05D008044 ORTHO05D010106 2.7e-43 179.1 164 53.7
CAN.G481.61 Capsicum annuum HOM05D008044 ORTHO05D010106 4.6e-43 178.3 159 56.6
Solyc03g082670.3 Solanum lycopersicum HOM05D008044 ORTHO05D010106 4.6e-43 178.3 159 54.7
arahy.Tifrunner.gnm1.ann1.QU8WMY Arachis hypogaea HOM05D008044 ORTHO05D010106 1.0e-42 177.2 165 53.3
AUR62035573 Chenopodium quinoa HOM05D008044 ORTHO05D010106 1.0e-42 177.2 164 54.9
Dinv35361 Davidia involucrata HOM05D008044 ORTHO05D010106 1.0e-42 177.2 166 53.6
Eucgr.A01433 Eucalyptus grandis HOM05D008044 ORTHO05D010106 1.7e-42 176.4 161 55.3
CSS0007407 Camellia sinensis var. sinensis HOM05D008044 ORTHO05D010106 3.0e-42 175.6 166 54.8
Glyma.04G232600 Glycine max HOM05D008044 ORTHO05D010106 3.0e-42 175.6 168 51.2
Nitab4.5_0008197g0010 Nicotiana tabacum HOM05D008044 ORTHO05D010106 3.0e-42 175.6 159 56.6
Duzib205G1586 Durio zibethinus HOM05D008044 ORTHO05D010106 3.9e-42 175.3 161 53.4
Sabra15G0006200 Salix brachista HOM05D002361 ORTHO05D002843 3.9e-42 175.3 163 54.6
AUR62006056 Chenopodium quinoa HOM05D008044 ORTHO05D010106 8.6e-42 174.1 164 53.7
arahy.Tifrunner.gnm1.ann1.4AVA7A Arachis hypogaea HOM05D008044 ORTHO05D010106 1.5e-41 173.3 165 52.1
Dinv29244 Davidia involucrata HOM05D008044 ORTHO05D010106 1.9e-41 172.9 165 54.5
HanXRQChr04g0100441 Helianthus annuus HOM05D008044 ORTHO05D010106 2.5e-41 172.6 159 56.0
TPR.G33642 Trifolium pratense HOM05D008044 ORTHO05D010106 3.3e-41 172.2 169 49.1
Atru.chr12.2313 Acer truncatum HOM05D008044 ORTHO05D010106 4.3e-41 171.8 168 53.6
Ciclev10022664m.g Citrus clementina HOM05D008044 ORTHO05D010106 4.3e-41 171.8 159 56.0
Gorai.003G122500 Gossypium raimondii HOM05D008044 ORTHO05D010106 4.3e-41 171.8 159 51.6
Gohir.D03G116200 Gossypium hirsutum HOM05D008044 ORTHO05D010106 5.6e-41 171.4 159 51.6
Medtr3g092020 Medicago truncatula HOM05D008044 ORTHO05D010106 7.3e-41 171.0 165 48.5
Gohir.A03G051500 Gossypium hirsutum HOM05D008044 ORTHO05D010106 9.5e-41 170.6 159 51.6
Lsat_1_v5_gn_2_135221 Lactuca sativa HOM05D008044 ORTHO05D010106 1.2e-40 170.2 166 51.8
Glyma.06G132400 Glycine max HOM05D008044 ORTHO05D010106 1.6e-40 169.9 168 50.6
Psat5g074880 Pisum sativum HOM05D008044 ORTHO05D010106 3.6e-40 168.7 165 48.5
PGR042G2636 Punica granatum HOM05D008044 ORTHO05D010106 3.6e-40 168.7 166 53.6
Lalb_Chr23g0271711 Lupinus albus HOM05D008044 ORTHO05D010106 1.1e-39 167.2 164 49.4
Cfa016194 Carpinus fangiana HOM05D008044 ORTHO05D010106 4.0e-39 165.2 161 54.7
QL09p007646 Quercus lobata HOM05D008044 ORTHO05D010106 4.0e-39 165.2 200 46.0
TAR636G0016 Trochodendron aralioides HOM05D008044 ORTHO05D010106 4.0e-39 165.2 164 53.7
GSVIVG01038604001 Vitis vinifera HOM05D008044 ORTHO05D010106 4.0e-39 165.2 166 51.8
PSO063G1947 Papaver somniferum HOM05D008044 ORTHO05D010106 1.2e-38 163.7 165 51.5
SalBow4G0010 Salvia bowleyana HOM05D008044 ORTHO05D010106 1.2e-38 163.7 165 50.9
Hund11636 Selenicereus undatus HOM05D008044 ORTHO05D010106 1.2e-38 163.7 169 51.5
Phvul.009G048200 Phaseolus vulgaris HOM05D008044 ORTHO05D010106 2.0e-38 162.9 165 48.5
Lj1g0025539 Lotus japonicus HOM05D008044 ORTHO05D010106 1.3e-37 160.2 169 48.5
Sc25g0000980 Simmondsia chinensis HOM05D008044 ORTHO05D010106 5.4e-36 154.8 168 47.6
Oeu037043.1 Olea europaea HOM05D001626 ORTHO05D010106 2.1e-35 152.9 157 49.7
Zm00001eb187590 Zea mays HOM05D008044 ORTHO05D010106 2.7e-35 152.5 154 51.3
SEGI_00721 Sequoiadendron giganteum HOM05D008044 ORTHO05D010106 3.5e-35 152.1 178 46.6
PSO782G0454 Papaver somniferum HOM05D008044 ORTHO05D010106 2.3e-34 149.4 111 63.1
ATR0620G028 Amborella trichopoda HOM05D008044 ORTHO05D010106 8.6e-34 147.5 164 50.0
ClCG05G009120 Citrullus lanatus HOM05D008044 ORTHO05D010106 8.6e-34 147.5 137 56.2
CANSAT21G1192 Cannabis sativa HOM05D008044 ORTHO05D010106 1.1e-33 147.1 159 49.7
Aqoxy5G02418 Aquilegia oxysepala HOM05D008044 ORTHO05D010106 1.5e-33 146.7 164 47.6
EL10Ac3g05235 Beta vulgaris HOM05D008044 ORTHO05D010106 6.2e-32 141.4 138 52.2
CiPaw.05G200900 Carya illinoinensis HOM05D008044 ORTHO05D010106 2.3e-31 139.4 164 46.3
Haze_00261 Corylus avellana HOM05D008044 ORTHO05D010106 6.8e-31 137.9 133 51.1
Nitab4.5_0010367g0020 Nicotiana tabacum HOM05D008044 ORTHO05D010106 1.5e-30 136.7 135 52.6
Actinidia08675 Actinidia chinensis HOM05D008044 ORTHO05D010106 4.4e-30 135.2 137 51.1
Sopen03g022430 Solanum pennellii HOM05D008044 ORTHO05D010106 4.9e-29 131.7 126 51.6
Hma1.2p1_0512F.1_g169310 Hydrangea macrophylla HOM05D008044 ORTHO05D010106 6.4e-29 131.3 132 50.0
MBI04_g11918_MAGBIO Magnolia biondii HOM05D008044 ORTHO05D010106 3.2e-28 129.0 189 40.7
CDE02G3408 Ceratophyllum demersum HOM05D008044 ORTHO05D010106 5.4e-28 128.3 109 56.0
Ca_16735_v3 Cicer arietinum L. HOM05D008044 ORTHO05D010106 1.2e-27 127.1 136 47.8
Zm00001eb421680 Zea mays HOM05D001260 ORTHO05D010106 5.1e-26 121.7 96 58.3
Ah.07g205140 Amaranthus hybridus HOM05D008044 ORTHO05D010106 3.3e-25 119.0 164 43.3
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 5.6e-25 118.2 137 44.5
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 2.1e-24 116.3 159 42.1
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 7.6e-22 107.8 131 45.0
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 2.2e-21 106.3 82 56.1
Os02g0686500 Oryza sativa ssp. japonica HOM05D008044 ORTHO05D010106 3.8e-21 105.5 82 57.3
AagrBONN_evm.TU.Sc2ySwM_117.1515 Anthoceros agrestis HOM05D008044 ORTHO05D010106 7.1e-20 101.3 188 31.4
Mapoly0007s0051 Marchantia polymorpha HOM05D008044 ORTHO05D010106 9.3e-20 100.9 174 33.9
Lsat_1_v5_gn_9_14140 Lactuca sativa HOM05D008044 ORTHO05D010106 1.2e-14 84.0 109 45.0
ECA238G1983 Erigeron canadensis HOM05D008044 ORTHO05D010106 3.0e-10 69.3 83 49.4
Nn1g00365 Nelumbo nucifera HOM05D008044 ORTHO05D010106 1.3e-08 63.9 84 47.6


User provided reference genes

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