Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 4753.3 2406 100.0
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 3405.5 2435 72.1
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 3352.4 2428 69.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2738.8 2462 57.8
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2629.0 2497 55.3
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2605.1 2459 55.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2538.5 2443 54.8
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2533.1 2436 54.1
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2514.2 2399 54.6
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2508.8 2391 55.4
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2503.0 2473 53.8
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2501.1 2471 54.1
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2499.9 2477 53.9
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2498.0 2458 53.7
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2496.5 2446 53.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2487.6 2467 53.3
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2485.7 2463 53.9
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2483.4 2473 53.4
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2482.6 2475 53.8
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2481.1 2434 53.9
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2480.3 2442 53.9
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2477.6 2435 53.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2477.6 2442 54.3
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2476.4 2466 53.4
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2471.4 2458 52.8
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2466.0 2460 52.6
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2457.2 2409 53.5
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2444.5 2458 52.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2432.5 2461 52.6
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2430.2 2458 52.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2410.6 2493 51.3
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2402.1 2465 52.0
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2397.9 2431 52.8
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2392.1 2493 50.9
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2389.0 2464 52.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2386.7 2454 51.4
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2385.1 2493 50.9
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2381.3 2464 52.0
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2377.8 2493 50.8
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2377.8 2447 51.6
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2367.4 2444 51.5
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2354.3 2447 51.1
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2352.8 2446 51.1
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2342.8 2458 50.8
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2341.2 2414 51.7
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2334.3 2444 51.1
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2328.5 2451 50.6
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2325.4 2453 50.8
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2322.4 2467 50.7
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2322.0 2454 50.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2314.7 2488 49.8
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2310.8 2432 50.0
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2282.7 2467 49.4
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2273.8 2462 50.0
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2273.8 2431 49.7
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2261.5 2436 49.2
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2260.7 2435 48.8
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2251.5 2483 48.9
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2245.3 2434 48.8
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2243.8 2485 48.8
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2239.2 2433 49.2
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2234.5 2460 49.4
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2232.6 2441 49.0
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2232.2 2483 49.6
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2227.6 2446 49.1
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2223.0 2471 49.0
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2223.0 2425 49.0
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2219.1 2451 49.3
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2211.8 2445 49.1
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2206.8 2440 49.0
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2206.8 2473 48.5
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2204.1 2421 48.5
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2202.6 2442 48.6
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2201.8 2453 49.0
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2197.2 2131 55.0
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2195.6 2465 48.5
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2195.2 2461 48.6
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2167.9 2437 47.4
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2154.4 2432 47.2
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2154.4 2403 48.5
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 2152.9 2429 48.9
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2150.9 2453 47.6
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2149.8 2449 47.8
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2132.5 2443 47.5
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2129.8 2072 54.7
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2125.1 2075 54.6
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 1998.0 2466 46.0
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1994.9 2267 47.6
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 1983.4 2454 45.6
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1900.2 2457 42.6
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1896.7 2421 43.3
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1851.3 1856 52.0
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1733.4 2520 40.7
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1557.3 1478 55.3
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1554.7 1478 55.2
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1550.4 1639 50.2
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1484.9 1028 72.6
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1480.7 1446 54.6
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1479.2 1524 52.2
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1372.5 1374 53.9
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1342.4 1391 51.8
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1304.3 1420 51.1
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1224.2 1098 57.8
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1194.5 1512 44.1
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1153.7 1175 52.3
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 3.2e-305 1053.1 1026 53.4
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.9e-286 990.7 1046 49.3
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 5.3e-276 956.1 2582 28.5
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 3.0e-263 913.7 1370 39.0
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 3.1e-252 877.1 2085 30.5
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 3.4e-251 873.6 2112 30.5
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 4.7e-240 836.6 919 47.6
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 6.1e-224 783.1 1481 35.1
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 3.1e-220 770.8 850 47.9
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.9e-201 708.4 787 47.6
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.4e-199 702.2 2161 27.2
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 5.2e-199 700.3 596 60.6
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 1.8e-175 622.1 795 42.3
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 4.0e-159 567.8 788 42.4
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.8e-111 409.5 513 45.4
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.8e-106 392.9 427 49.2
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 3.0e-106 392.1 318 60.1
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 6.3e-104 384.4 465 46.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 2.7e-102 379.0 262 68.7
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 3.4e-89 335.5 403 45.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 3.5e-86 325.5 335 46.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.6e-83 316.6 341 50.7
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.0e-77 297.4 345 46.4
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 3.2e-71 275.8 232 58.6
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 6.0e-70 271.6 475 35.2
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.1e-68 267.3 334 46.4
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.1e-55 224.2 440 33.4
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 3.9e-53 215.7 150 70.7
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.7e-51 209.1 338 38.8
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 4.0e-50 205.7 277 43.0
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 8.4e-48 198.0 256 47.3
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 4.6e-46 192.2 187 53.5
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 7.9e-46 191.4 122 76.2
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.8e-45 190.3 186 53.2
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 3.7e-43 182.6 237 42.6
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.6e-41 176.4 791 23.0
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 3.8e-40 172.6 123 67.5
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 6.7e-37 161.8 120 67.5
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 1.8e-34 153.7 98 75.5
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 9.0e-34 151.4 110 65.5
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 1.2e-33 151.0 131 58.0
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.0e-29 136.3 273 33.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 5.3e-26 125.6 337 28.5
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 2.6e-25 123.2 318 33.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.0e-21 109.8 99 54.5
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 6.7e-21 108.6 148 38.5
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-20 107.5 289 32.5
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.7e-20 105.5 190 37.9
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 1.3e-19 104.4 174 39.1
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.4e-18 100.9 124 42.7
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 2.0e-12 80.5 105 41.0
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 2.2e-11 77.0 76 48.7
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 4.8e-11 75.9 76 47.4
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-10 73.6 65 47.7
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 1.3e-08 67.8 91 42.9
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 3.2e-07 63.2 42 73.8
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 9.4e-07 61.6 122 34.4


User provided reference genes

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